These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4290#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 841 fasta sequence [CCGGTTTTCTATCCGAGACGCTCCAGAATTGTTTGCCTCATTCCGATTTAATTACGCGTTAAAATGGATGCAAACTCATCCATTAGCACGGAACCACCGATGGAATGTTCCACCCCGACAAGTGCTGCCGATTTGGCAAACGATCAGAAGCGCCGGAGCTCTTCCCGTTCGATCAAAAGAAAGCGATTTGATGATGAAATAGTCGAGTTTAGCATGAGCAGCACACCGATCCAGCAGATGAAAGCGGTAGCCGGAAGATCCCGCACCCTCTCCCAATCGATGACGCCACTCGGC---GCTGCTGCTGCTGCTGCTCCGGGACAGACTGGTGTGGCATCACCCGGTCCCGTCACAACCACAATCGGTTCTCCCACGGCCACCGTAGAACCGATGCAAACTGTCCCATCCGTCGCGCCTGCTGCTCTGCCACCAGTAGCTCCACCCGCAACACCGCTTCCACCGCCGACTCCCACTACCGTAACGCTACCACCCCCACCGACACCCAATCCAGTAACCAGCATCCTGCAGCAGCTGAACTCGAACGCATCGGTCAACGATAAGAAGCGGGCGCTGAAAAACACGAAGCGCACGAAGAAAAAGAGCGCCTCGCAGCAGGTGGCCGCCAAAGATCTGGGCCGCTGGAAGCCGATGGAACGATCTGGCCCTCATTACGGGCATCCTGCAGACGAACGATCTGCGCACGGTGCACCGCGGGACCAAGTTTAGCTGCAAGTTCACCATACAGGAGATGCAGATCCGCTGGTGCTCGCTGCTGTACGANGAGCCGATCTCGCGCATCGCCGTGTCCGCCATGCGCAACATGCATCCCGAGCTGGTGGAAAGC] [+] EMBL BM588780 [CCGGTTTTCTATCCGAGACGCTCCAGAATTGTTTGCCTCATTCCGATTTAATTACGCGTTAAAATGGATGCAAACTCATCCATTAGCACGGAACCACCGATGGAATGTTCCACCCCGACAAGTGCTGCCGATTTGGCAAACGATCAGAAGCGCCGGAGCTCTTCCCGTTCGATCAAAAGAAAGCGATTTGATGATGAAATAGTCGAGTTTAGCATGAGCAGCACACCGATCCAGCAGATGAAAGCGGTAGCCGGAAGATCCCGCACCCTCTCCCAATCGATGACGCCACTCGGC GCTGCTGCTGCTGCTGCTCCGGGACAGACTGGTGTGGCATCACCCGGTCCCGTCACAACCACAATCGGTTCTCCCACGGCCACCGTAGAACCGATGCAAACTGTCCCATCCGTCGCGCCTGCTGCTCTGCCACCAGTAGCTCCACCCGCAACACCGCTTCCACCGCCGACTCCCACTACCGTAACGCTACCACCCCCACCGACACCCAATCCAGTAACCAGCATCCTGCAGCAGCTGAACTCGAACGCATCGGTCAACGATAAGAAGCGGGCGCTGAAAAACACGAAGCGCACGAAGAAAAAGAGCGCCTCGCAGCAGGTGGCCGCCAAAGATCTGGGCCGCTGGAAGCCGATGGAACGATCTGGCCCTCATTACGG ] [+] EMBL BX622976 [ CATTCCGCACTAATTACGCGTTAAAATGGATGCAAACACATCCATTAGCACGGAACCACCGATGGAATGTTCCACCCCGACAAGTGCTGCCGATTTGGCCAACGATCAGAAGCGCCGAAGCTCTTCCCGTTCGATCAAAAGAAAGCGATTTGATGATGAAATAGTCGAGTTTAGCATGAGCAGCACACCGATCCAGCAGATGAAAGCGGTAGCCGGAAGATCCCGCACCCTCTCCCAATCGATGACGCCACTCGGCGCTGCTGCTGCTGCTGCTGCTCCGGGACAGACTGGTGTGGCATCACCCGGTCCCGTCACAACCACAATCGGTTCTCCCACGGCCACCGCAGAACCGATGCAAACTGTCCCATCCGTCGCGCCTGCTGCTCTGCCACCAGTAGCTCCACCCGCAACACCGCTTCCACCGCCGACCCCCACTACCGTAACGCTACCACCCCCACCGACACCCAATCCAGTAACCAGCATCCTGCAGCAGCTGAACTCGAACGCATCGGTCAACGATAAGAAGCGGGCGCTGAAAAACACGAAGCGCACGAAGAAAAAGAGCGCCTCGCAGCAGGTGGCCGCCAAAGATCTGGGCCGCTGGAAGCCGATGG ACGATCTGGCCCTCATTACGGGCATCCTGCAGACGAACGATCTGCGCACGGTGCACCGCGGGACCAAGTTTAGCTGCAAGTTCACCATACAGGAGATGCAGATCCGCTGGTGCTCGCTGCTGTACGANGAGCCGATCTCGCGCATCGCCGTGTCCGCCATGCGCAACATGCATCCCGAGCTGGTGGAAAGC] consensusID : consensus_4290#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [CACGAGGTTNATGAAAGCGGTAGCCGGAAGATCCGCACCTCTCCCAATCGATGACGCCACTCGGCGCTGCTGCTGCTGCTGCTGCTCCGGGACAGACTGGTGTGGCATCACCCGGTCCCGTCACAACCACAATCGGTTCTCCCACGGCCACCGCAGAACCGATGCAAACTGTCCCATCCTGTCTGCGCCTGCTGCTCTGCCACCAGTAGCTCCACCCGCAACACCTGCTTCCACCGCCTGACCCCCACTACCGTAACGCTACCACCCCCACCGACACCCAATCCAGTAACCAGCATCCTGCAGCAGCTGAACTCGAACGCATCGGTCAACGATAAGAAGCGGGCGCTGAAAAACACGAAGCGCACGAAGAAAAAGAGCGCCTCGCAGCAGGTGGCCGCCAAAGATCTGGGCCGCTGGAAGCCGATGGACGATCTGGCCCTCATTACGGGCATCCTGCAGACGAACGATCTGCGCACGGTGCACCGCGGGACCAAGTTTAGCTGCAAGTTCANCATACAGGAGATGCAGATCCGNTGGTGCTCGCTGCTGTACGAGGAGCCGATCTCGCGCATCGCCGTGTCCGCAT] [+] EMBL AL930057 [CACGAGGTTNATGAAAGCGGTAGCCGGAAGATCCGCACCTCTCCCAATCGATGACGCCACTCGGCGCTGCTGCTGCTGCTGCTGCTCCGGGACAGACTGGTGTGGCATCACCCGGTCCCGTCACAACCACAATCGGTTCTCCCACGGCCACCGCAGAACCGATGCAAACTGTCCCATCCTGTCTGCGCCTGCTGCTCTGCCACCAGTAGCTCCACCCGCAACACCTGCTTCCACCGCCTGACCCCCACTACCGTAACGCTACCACCCCCACCGACACCCAATCCAGTAACCAGCATCCTGCAGCAGCTGAACTCGAACGCATCGGTCAACGATAAGAAGCGGGCGCTGAAAAACACGAAGCGCACGAAGAAAAAGAGCGCCTCGCAGCAGGTGGCCGCCAAAGATCTGGGCCGCTGGAAGCCGATGGACGATCTGGCCCTCATTACGGGCATCCTGCAGACGAACGATCTGCGCACGGTGCACCGCGGGACCAAGTTTAGCTGCAAGTTCANCATACAGGAGATGCAGATCCGNTGGTGCTCGCTGCTGTACGAGGAGCCGATCTCGCGCATCGCCGTGTCCGCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4290#0 CCGGTTTTCTATCCGAGACGCTCCAGAATTGTTTGCCTCATTCCGATTTAATTACGCGTT 60 consensus_4290#1 ------------------------------------------------------------ consensus_4290#0 AAAATGGATGCAAACTCATCCATTAGCACGGAACCACCGATGGAATGTTCCACCCCGACA 120 consensus_4290#1 ------------------------------------------------------------ consensus_4290#0 AGTGCTGCCGATTTGGCAAACGATCAGAAGCGCCGGAGCTCTTCCCGTTCGATCAAAAGA 180 consensus_4290#1 ------------------------------------------------------------ consensus_4290#0 AAGCGATTTGATGATGAAATAGTCGAGTTTAGCATGAGCAGCACACCGATCCAGCAGATG 240 consensus_4290#1 -----------------------------------------------CACGAGGTTNATG 13 * * *** consensus_4290#0 AAAGCGGTAGCCGGAAGATCCCGCACCCTCTCCCAATCGATGACGCCACTCGGCGCTGCT 300 consensus_4290#1 AAAGCGGTAGCCGGAAGATCC-GCACC-TCTCCCAATCGATGACGCCACTCGGCGCTGCT 71 ********************* ***** ******************************** consensus_4290#0 GCTGCTGCTGCT---CCGGGACAGACTGGTGTGGCATCACCCGGTCCCGTCACAACCACA 357 consensus_4290#1 GCTGCTGCTGCTGCTCCGGGACAGACTGGTGTGGCATCACCCGGTCCCGTCACAACCACA 131 ************ ********************************************* consensus_4290#0 ATCGGTTCTCCCACGGCCACCGTAGAACCGATGCAAACTGTCCCATCC-GTC-GCGCCTG 415 consensus_4290#1 ATCGGTTCTCCCACGGCCACCGCAGAACCGATGCAAACTGTCCCATCCTGTCTGCGCCTG 191 ********************** ************************* *** ******* consensus_4290#0 CTGCTCTGCCACCAGTAGCTCCACCCGCAACACC-GCTTCCACCGCC-GACTCCCACTAC 473 consensus_4290#1 CTGCTCTGCCACCAGTAGCTCCACCCGCAACACCTGCTTCCACCGCCTGACCCCCACTAC 251 ********************************** ************ *** ******** consensus_4290#0 CGTAACGCTACCACCCCCACCGACACCCAATCCAGTAACCAGCATCCTGCAGCAGCTGAA 533 consensus_4290#1 CGTAACGCTACCACCCCCACCGACACCCAATCCAGTAACCAGCATCCTGCAGCAGCTGAA 311 ************************************************************ consensus_4290#0 CTCGAACGCATCGGTCAACGATAAGAAGCGGGCGCTGAAAAACACGAAGCGCACGAAGAA 593 consensus_4290#1 CTCGAACGCATCGGTCAACGATAAGAAGCGGGCGCTGAAAAACACGAAGCGCACGAAGAA 371 ************************************************************ consensus_4290#0 AAAGAGCGCCTCGCAGCAGGTGGCCGCCAAAGATCTGGGCCGCTGGAAGCCGATGGAACG 653 consensus_4290#1 AAAGAGCGCCTCGCAGCAGGTGGCCGCCAAAGATCTGGGCCGCTGGAAGCCGATGGA-CG 430 ********************************************************* ** consensus_4290#0 ATCTGGCCCTCATTACGGGCATCCTGCAGACGAACGATCTGCGCACGGTGCACCGCGGGA 713 consensus_4290#1 ATCTGGCCCTCATTACGGGCATCCTGCAGACGAACGATCTGCGCACGGTGCACCGCGGGA 490 ************************************************************ consensus_4290#0 CCAAGTTTAGCTGCAAGTTCACCATACAGGAGATGCAGATCCGCTGGTGCTCGCTGCTGT 773 consensus_4290#1 CCAAGTTTAGCTGCAAGTTCANCATACAGGAGATGCAGATCCGNTGGTGCTCGCTGCTGT 550 ********************* ********************* **************** consensus_4290#0 ACGANGAGCCGATCTCGCGCATCGCCGTGTCCGCCATGCGCAACATGCATCCCGAGCTGG 833 consensus_4290#1 ACGAGGAGCCGATCTCGCGCATCGCCGTGTCCGC-AT----------------------- 586 **** ***************************** ** consensus_4290#0 TGGAAAGC 841 consensus_4290#1 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||