These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4297#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 596 fasta sequence [AATCCCCGAGGTTAAGGTAAATGAAAGATGGGCNTAAAAAATATAAAACCCCGTAAAACAAAACGTCTCCCGTCCGATGAGTAATGGTTGTGTAACGAGAGAGCGGGAGAGAAAGAGAGATAGTGCGTAATTAAATTAAATTATATTTGAAACACCACTCCGCAACCGCACGGGCAGGAAAGGAAAATTGAATTCAAAACAGAACCGAAACAGAACGGACCCCCAAAAACCAGTGCCACCATGCAGCAGTCGTCCTGCTTGATGCTGATGATGAAGGGTACACTGGGAATAATAACAAAATAAAAAAGCTACACGCATTGCAGAGCGCAAAAAGTAGAAGAGAATGGAAATAAATGTCCAAGAAGGCAATAAAATAATGGTTGGTTGGCTGGCCCCGCGCGCGATATTACAATGCAGGGCGGGCCGGAAGGTCGGATGTCTTTGTGGTCTTTGAAGAACGTGGAACCGAGGTGTAACAAAAAGAAGTGGTAATAAAGTGAAAATTGAATGATAATGTACCTCCTACCCACAGGTCCCTTCTTAAAAACTCCCAACGACGACCCCAGTGGTCTAACGCCCCGCGCCCAACCCCCCCN] [+] EMBL AL933568 [AATCCCCGAGGTTAAGGTAAATGAAAGATGGGCNTAAAAAATATAAAACCCCGTAAAACAAAACGTCTCCCGTCCGATGAGTAATGGTTGTGTAACGAGAGAGCGGGAGAGAAAGAGAGATAGTGCGTAATTAAATTAAATTATATTTGAAACACCACTCCGCAACCGCACGGGCAGGAAAGGAAAATTGAATTCAAAACAGAACCGAAACAGAACGGACCCCCAAAAACCAGTGCCACCATGCAGCAGTCGTCCTGCTTGATGCTGATGATGAAGGGTACACTGGGAATAATAACAAAATAAAAAAGCTACACGCATTGCAGAGCGCAAAAAGTAGAAGAGAATGGAAATAAATGTCCAAGAAGGCAATAAAATAATGGTTGGTTGGCTGGCCCCGCGCGCGATATTACAATGCAGGGCGGGCCGGAAGGTCGGATGTCTTTGTGGTCTTTGAAGAACGTGGAACCGAGGTGTAACAAAAAGAAGTGGTAATAAAGTGAAAATTGAATGATAATGTACCTCCTACCCACAGGTCCCTTCTTAAAAACTCCCAACGACGACCCCAGTGGTCTAACGCCCCGCGCCCAACCCCCCCN] consensusID : consensus_4297#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence [AGGCAAGAATCNGGCACGTNGGAGGTTGTGTAACGAGAGAGCGCNAGAGAATAGAGATAGTGCGTAATTAAATTAAATTATATTTGAAACACCACTCCGCAACCGCACGGGCAGGAAAGGAAAATTGAATTCAAAACAGAACCGAAACAGAACGGACCCCCAAAAACCAGTGCCACCATGCAGCAGTCGTCCTGCTTGATGCTGATGATGAAGGGTACACTGGGAATAATAACAAAATAAAAAAGCTACACGCATTGCAGAGCGCAAAAAGTAGAAGAGAATGGAAATAAATGTCCAAGAAGGCAATAAAATAATGGTTGGTTGGCTGGCCCCGCGCGCGATATTACAATGCAGGGCGGGCCGGAAGGTCGGATGTCTTTGTGGTCTTTGAACGAACGTGGAACCGAGGTGTAACAAAACAGAAGTGGTAATACAAGTGAAACATTCGAATGATAATGTACCTCCTACCCACAGGTCCCTTCTTCAAAAAACTC] [+] EMBL BX467220 [AGGCAAGAATCNGGCACGTNGGAGGTTGTGTAACGAGAGAGCGCNAGAGAATAGAGATAGTGCGTAATTAAATTAAATTATATTTGAAACACCACTCCGCAACCGCACGGGCAGGAAAGGAAAATTGAATTCAAAACAGAACCGAAACAGAACGGACCCCCAAAAACCAGTGCCACCATGCAGCAGTCGTCCTGCTTGATGCTGATGATGAAGGGTACACTGGGAATAATAACAAAATAAAAAAGCTACACGCATTGCAGAGCGCAAAAAGTAGAAGAGAATGGAAATAAATGTCCAAGAAGGCAATAAAATAATGGTTGGTTGGCTGGCCCCGCGCGCGATATTACAATGCAGGGCGGGCCGGAAGGTCGGATGTCTTTGTGGTCTTTGAACGAACGTGGAACCGAGGTGTAACAAAACAGAAGTGGTAATACAAGTGAAACATTCGAATGATAATGTACCTCCTACCCACAGGTCCCTTCTTCAAAAAACTC] consensusID : consensus_4297#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 421 fasta sequence [TGGCTGGCCCCGCGCGCGATATTACAATGCAGGGCGGGCCGGAAGGTCGGATGTCTTTGTGGTCTTTGAAGAACGTGGAACCGAGGTGTAACAAAAAGAAGTGGTAATAAAGTGAAAATTGAATGATAATGTACCTACGGACAGGTCCCACTTCTCCCGCGCTCTTAAAAACTCCCAACGACGACCCCAGTGGTCTAACGCCTTGTTCTCCCCCTCTTTTCCCCCCCCCCCCACCCCTCAGTAAGTTTAACACGTAAGCAGCGGAAGCATCATCTTCAACTTTAAAAGCAATATTTCTTCTACAGAAAACACACAAACACAACAAGTATATAAGCATATTGAAGCATGGAAGGTAGGGCAAGAGAACAAATAAAGCGTACAATTTCACTTCATACTCTCCTCTAAAAGGTGATAAACTAAC] [+] EMBL BX616256 [TGGCTGGCCCCGCGCGCGATATTACAATGCAGGGCGGGCCGGAAGGTCGGATGTCTTTGTGGTCTTTGAAGAACGTGGAACCGAGGTGTAACAAAAAGAAGTGGTAATAAAGTGAAAATTGAATGATAATGTACCTACGGACAGGTCCCACTTCTCCCGCGCTCTTAAAAACTCCCAACGACGACCCCAGTGGTCTAACGCCTTGTTCTCCCCCTCTTTTCCCCCCCCCCCCACCCCTCAGTAAGTTTAACACGTAAGCAGCGGAAGCATCATCTTCAACTTTAAAAGCAATATTTCTTCTACAGAAAACACACAAACACAACAAGTATATAAGCATATTGAAGCATGGAAGGTAGGGCAAGAGAACAAATAAAGCGTACAATTTCACTTCATACTCTCCTCTAAAAGGTGATAAACTAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4297#0 AATCCCCGAGGTTAAGGTAAATGAAAGATGGGCNTAAAAAATATAAAACCCCGTAAAACA 60 consensus_4297#1 -------------------------------------------------------AGGCA 5 consensus_4297#2 ------------------------------------------------------------ consensus_4297#0 AAACGTCTCCCGTCCGATGAGTAATGGTTGTGTAACGAGAGAGCGGGAGAGAAAGAGAGA 120 consensus_4297#1 AGAA---TCNGGCACGTNGGA----GGTTGTGTAACGAGAGAGCGCNAGAGAAT-AGAGA 57 consensus_4297#2 --------------TGGCTGGCCCCGCGCGCGATATTACAATGCAGGGCGGGCCGGAAGG 46 * * * * * * * ** * ** consensus_4297#0 TAGTGCGTAATTAAATTAAATTATATTTGAAACACCACTCCGCAACCGCACGGGCAGGAA 180 consensus_4297#1 TAGTGCGTAATTAAATTAAATTATATTTGAAACACCACTCCGCAACCGCACGGGCAGGAA 117 consensus_4297#2 TCGGATGTCTTTG-------TGGTCTTTGAAGAAC----GTGGAACCG-AGGTGTAACAA 94 * * ** ** * * ****** ** * ***** * * * * ** consensus_4297#0 AGGAAAATTGAATTCAAAACAGAACCGAAACAGAACGGACCCCCAAAAACCAGTGCCACC 240 consensus_4297#1 AGGAAAATTGAATTCAAAACAGAACCGAAACAGAACGGACCCCCAAAAACCAGTGCCACC 177 consensus_4297#2 AAAGAAGTGGTAATAAAGTGAAAATTGAATGATAATGTACCTACGGACA--GGTCCCACT 152 * ** * * * * ** * ** *** * ** * *** * * * ** **** consensus_4297#0 ATGCAGCAGTCGTCCTGCTTGATGCTGATGATGAAGGGTACACTGGGAATAATAACAAAA 300 consensus_4297#1 ATGCAGCAGTCGTCCTGCTTGATGCTGATGATGAAGGGTACACTGGGAATAATAACAAAA 237 consensus_4297#2 TCTC-----CCGCGCTCTTAAAAACTCCCAACGACGACCCCAGTGGTC-TAACGCCTTGT 206 * ** ** * * ** * ** * ** *** *** * consensus_4297#0 TAAAAAAGCTACACGCATTGCAGAGCGCAAAAAGTAGAAGAGAATGGAAATAAATGTCCA 360 consensus_4297#1 TAAAAAAGCTACACGCATTGCAGAGCGCAAAAAGTAGAAGAGAATGGAAATAAATGTCCA 297 consensus_4297#2 TCT-----CCCCCTCTTTTCCCCCCCCCCCCACCCCTCAGTAAGTTTAA---------CA 252 * * * ** * * * * ** * * ** ** consensus_4297#0 AGAAGGCAATAAAATAATGGTTGGTTGGCTGGCCCCGCGCGCGATATTACAA-TGCAGGG 419 consensus_4297#1 AGAAGGCAATAAAATAATGGTTGGTTGGCTGGCCCCGCGCGCGATATTACAA-TGCAGGG 356 consensus_4297#2 CGTAAGCAGCGGAAGCATCATCT-----TCAACTTTAAAAGCAATATTTCTTCTACAGAA 307 * * *** ** ** * * ** ***** * * *** consensus_4297#0 CGGGCCGGAAGGTCGGATGTCTTTGTGGTCTTTGAA-GAACGTGGAACCGAGGTGTAACA 478 consensus_4297#1 CGGGCCGGAAGGTCGGATGTCTTTGTGGTCTTTGAACGAACGTGGAACCGAGGTGTAACA 416 consensus_4297#2 AACACACAAACACAACAAGTATATAAGCATATTGAA---GCATGGAA----GGTAGGGCA 360 * ** * ** * * * ***** * ***** *** ** consensus_4297#0 AAA-AGAAGTGGTAATA-AAGTGAAAA--TTGAATGATAATGTACCTCCTACCCACAGGT 534 consensus_4297#1 AAACAGAAGTGGTAATACAAGTGAAACATTCGAATGATAATGTACCTCCTACCCACAGGT 476 consensus_4297#2 AGAGAACA-----AATA-AAGCGTACAATTTCACTT----CATACTCTCCTCTAAAAGGT 410 * * * * **** *** * * * * * *** * * * **** consensus_4297#0 CCCTTCTTAAAAACTCCCAACGACGACCCCAGTGGTCTAACGCCCCGCGCCCAACCCCCC 594 consensus_4297#1 CCCTTCTTCAAAAAACTC------------------------------------------ 494 consensus_4297#2 GATAAACTAAC------------------------------------------------- 421 * * consensus_4297#0 CN 596 consensus_4297#1 -- consensus_4297#2 -- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||