These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4321#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 725 fasta sequence [CCGCGAAAGGATAAAACATGTTTCGAACCACCCGGAGTGGAGGCGACAGCGAATCCAGAAAGAGGAGAGGCAGTAGCGGAATAATGGCAATTGGTGGCCTGAACAGCGCAGCACAGTGCAATGCAACTATCTATGTGGAAGGAGGGAGGCAAGCATTATTAATAACACAATATACTTACGGTTATCAAAAAGAAAAATGGGGCACGGTGGGAGGAACAATATTGAACGTCAAATTGAAACATTAGCAAGAGCGTGGAGCCTATAGGAGCAGCAGGGTGGGAGAATGGTGTAGGATTTCGG------GCAGAAGCAAACAGGCACGCTAAGTCAAGACGGAAGCAGGTCTACAACCTCACCGAACAAC--AATGGTCCGCCAGTGCGCGCGAGAGAGCCGCACGAAACACCAGCAAAACCGAAACAGCCGCCGACAA--TGCGCGCGCGCCACCCCATCCGTGTGTGCTCTTCCCTGTCGATTCTTCTCCGACTGCTCCCCGGGCCGTTACAATGTGGATCTCTGACTCTTTGGCATGTATGATAGCGCTTTGGCATTGCCGATGCTACGATGTAGTTGTGCATGGGAGAAAGGTGTTCATTTAACACCTTTTGTGAGCTTTGGCTCTTGAGTTTTGGAGTTGTATGATTACTTGCTGGCCATGCCTGCCTTATTGGTTGCATCATCTATGATTATCACGGTCCAAAGGAACTTGCACCTTAAAATTGCTGAAAGG] [+] EMBL BM619226 [CCGCGAAAGGATAAAACATGTTTCGAACCACCCGGAGTGGAGGCGACAGCGAATCCAGAAAGAGGAGAGGCAGTAGCGGAATAATGGCAATTGGTGGCCTGAACAGCGCAGCACAGTGCAATGCAACTATCTATGTGGAAGGAGGGAGGCAAGCATTATTAATAACACAATATACTTACGGTTATCAAAAAGAAAAATGGGGCACGGTGGGAGGAACAATATTGAACGTCAAATTGAAACATTAGCAAGAGCGTGGAGCCTATAGGAGCAGCAGGGTGGGAGAATGGTGTAGGATTTCGG GCAGAAGCAAACAGGCACGCTAAGTCAAGACGGAAGCAGGTCTACAACCTCACCGAACAAC AATGGTCCGCCAGTGCGCGCGAGAGAGCCGCACGAAACACCAGCAAAACCGAAACAGCCGCCGACAA TGCGCGCGCGCCACCCCATCCG ] [+] EMBL BM612929 [ ccGGCAGTAGCGGAATAATGGCAATTGGTGGCCTGAACAGCGCAGCACAGTGCAATGCAACTATCTATGTGGAAGGAGGGAGGCAAGCATTATTAATAACACAATATACTTACGGTTATCAAAAAGAAAAATGGGGCACGGTGGGAGGAACAATATTGAACGTCAAATTGAAACATTAGCAAGAGCGTGGAGCCTATAGGAGCAGCAGGGTGGGAGAATGGTGTAGGATTTCGGGCAGAAGCAGAAGCAAACCGGCACGCTAAGTCAAGACGGAAGCAGGTCTACAACCTCACCGAACAACCGAATGGTCCGCCAGTGCGCGCGAGAGAGCCGCACGAAACACCAGCAAAACCGAAACAGCCGCCGACAACGCGCGCGCGCGCCACCCCATCCGTGTGTGCTCTTCCCTGTCGATTCTTCTCCGACTGCTCCCCGGGCCGTTACAATGTGGATCTCTGACTCTTTGGCATGTATGATAGCGCTTTGGCATTGCCGATGCTACGATGTAGTTGTGCATGGGAGAAAGGTGTTCATTTAACACCTTTTGTGAGCTTTGGCTCTTGAGTTTTGGAGTTGTATGATTACTTGCTGGCCATGCCTGCCTTATTGGTTGCATCATCTATGATTATCACGGTCCAAAGGAACTTGCACCTTAAAATTGCTGAAAGG] consensusID : consensus_4321#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 523 fasta sequence [ATCGCCCGAGGTTTGGTGTAGGATTTCGGGCAGAAGCAAACAGGCACGCTAAGTCAAGACGGAAGCAGGTCTACAACCTCACCGAACAACAATGGTCCGCCAGTGCGCGCGAGAGAGCCGCACGAAACACCAGCAAAACCGAAACAGCCGCCGACAATGCGCGCGCGCCACCCCATCCGTGTGTGCTCTTCCCTGTCGATTCTTCTCCGACTGCTCCCCGGGCCGTTACAATGTGGATCTCTGACTCTTTGGCATGTATGATAGCGCTTTGGCATTGCCGATGCTACGATGTAGTTGTGCATGGGAGAAAGGTGTTCATTTAACACCTTATTCGTGAGCTTTGGCTCTTGAGTTTTCGGAGCTGTATGATTACTTGCTGGCCATGCCTGCCTTATTGGTTGCATCACTCTATGCGTTATCACGGTCCAAAGGAACTTGCACCTTAAAATTGTTCGAAAGCAACACATTTNGATNGGTTTCGTTGCATTCCCCTACTTGTTGGGAGGTGATTTTCAACAACTGC] [+] EMBL AL933121 [ATCGCCCGAGGTTTGGTGTAGGATTTCGGGCAGAAGCAAACAGGCACGCTAAGTCAAGACGGAAGCAGGTCTACAACCTCACCGAACAACAATGGTCCGCCAGTGCGCGCGAGAGAGCCGCACGAAACACCAGCAAAACCGAAACAGCCGCCGACAATGCGCGCGCGCCACCCCATCCGTGTGTGCTCTTCCCTGTCGATTCTTCTCCGACTGCTCCCCGGGCCGTTACAATGTGGATCTCTGACTCTTTGGCATGTATGATAGCGCTTTGGCATTGCCGATGCTACGATGTAGTTGTGCATGGGAGAAAGGTGTTCATTTAACACCTTATTCGTGAGCTTTGGCTCTTGAGTTTTCGGAGCTGTATGATTACTTGCTGGCCATGCCTGCCTTATTGGTTGCATCACTCTATGCGTTATCACGGTCCAAAGGAACTTGCACCTTAAAATTGTTCGAAAGCAACACATTTNGATNGGTTTCGTTGCATTCCCCTACTTGTTGGGAGGTGATTTTCAACAACTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4321#0 CCGCGAAAGGATAAAACATGTTTCGAACCACCCGGAGTGGAGGCGACAGCGAATCCAGAA 60 consensus_4321#1 ------------------------------------------------------------ consensus_4321#0 AGAGGAGAGGCAGTAGCGGAATAATGGCAATTGGTGGCCTGAACAGCGCAGCACAGTGCA 120 consensus_4321#1 ------------------------------------------------------------ consensus_4321#0 ATGCAACTATCTATGTGGAAGGAGGGAGGCAAGCATTATTAATAACACAATATACTTACG 180 consensus_4321#1 ------------------------------------------------------------ consensus_4321#0 GTTATCAAAAAGAAAAATGGGGCACGGTGGGAGGAACAATATTGAACGTCAAATTGAAAC 240 consensus_4321#1 ------------------------------------------------------------ consensus_4321#0 ATTAGCAAGAGCGTGGAGCCTATAGGAGCAGCAGGGTGGGAGAATGGTGTAGGATTTCGG 300 consensus_4321#1 -------------------------------ATCGCCCGAGGTTTGGTGTAGGATTTCGG 29 * * * **************** consensus_4321#0 GCAGAAGCAAACAGGCACGCTAAGTCAAGACGGAAGCAGGTCTACAACCTCACCGAACAA 360 consensus_4321#1 GCAGAAGCAAACAGGCACGCTAAGTCAAGACGGAAGCAGGTCTACAACCTCACCGAACAA 89 ************************************************************ consensus_4321#0 CAATGGTCCGCCAGTGCGCGCGAGAGAGCCGCACGAAACACCAGCAAAACCGAAACAGCC 420 consensus_4321#1 CAATGGTCCGCCAGTGCGCGCGAGAGAGCCGCACGAAACACCAGCAAAACCGAAACAGCC 149 ************************************************************ consensus_4321#0 GCCGACAATGCGCGCGCGCCACCCCATCCGTGTGTGCTCTTCCCTGTCGATTCTTCTCCG 480 consensus_4321#1 GCCGACAATGCGCGCGCGCCACCCCATCCGTGTGTGCTCTTCCCTGTCGATTCTTCTCCG 209 ************************************************************ consensus_4321#0 ACTGCTCCCCGGGCCGTTACAATGTGGATCTCTGACTCTTTGGCATGTATGATAGCGCTT 540 consensus_4321#1 ACTGCTCCCCGGGCCGTTACAATGTGGATCTCTGACTCTTTGGCATGTATGATAGCGCTT 269 ************************************************************ consensus_4321#0 TGGCATTGCCGATGCTACGATGTAGTTGTGCATGGGAGAAAGGTGTTCATTTAACACCTT 600 consensus_4321#1 TGGCATTGCCGATGCTACGATGTAGTTGTGCATGGGAGAAAGGTGTTCATTTAACACCTT 329 ************************************************************ consensus_4321#0 --TTGTGAGCTTTGGCTCTTGAGTTTT-GGAGTTGTATGATTACTTGCTGGCCATGCCTG 657 consensus_4321#1 ATTCGTGAGCTTTGGCTCTTGAGTTTTCGGAGCTGTATGATTACTTGCTGGCCATGCCTG 389 * *********************** **** *************************** consensus_4321#0 CCTTATTGGTTGCATCA-TCTATG-ATTATCACGGTCCAAAGGAACTTGCACCTTAAAAT 715 consensus_4321#1 CCTTATTGGTTGCATCACTCTATGCGTTATCACGGTCCAAAGGAACTTGCACCTTAAAAT 449 ***************** ****** ********************************** consensus_4321#0 TGCTGAAAGG-------------------------------------------------- 725 consensus_4321#1 TGTTCGAAAGCAACACATTTNGATNGGTTTCGTTGCATTCCCCTACTTGTTGGGAGGTGA 509 ** * ** * consensus_4321#0 -------------- consensus_4321#1 TTTTCAACAACTGC 523 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||