cluster # 4323

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Anopheles gambiae
cluster # 4323 cluster # 4323 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4323#0 length = 694 sequences # 2

consensus_4323#1 length = 371 sequences # 1

consensusID : consensus_4323#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 694
fasta sequence

                              [CCGCAAAAACAATTCCGCACGCATTTGTTTTTGCTCGTCGCGTATAGTTTGGGTGCATTAGCTACGCAAAAAAGGTCATTATTTTTCGTCTAAAACATATCCCTCCTCCACCCATACAGCCGTTGCACTACCACCGCCCGCAGCAACCCCTCACCATGCAGAAGTACGAAAAGCTCGAGAAAATCGGCGAAGGTACGTACGGTACCGTGTTCAAGGGTAAGAACCGAGACACGCTCGAAATCGTCGCCCTGAAGCGGGTCCGGCTGGACGAGGACGACGAGGGTGTGCCGAGCTCGGCGCTGCGCGAAATCTGTCTGCTGAAGGAGCTGAAGCACAAAAACATCGTCCGGCTGTACGACGTGCTGCACTCGGACAAGAAGCTAACGCTCGTGTTCGAGCACTGCGACCAGGATCTGAAGAAGTACTTCGACAGCCTGAACGGCGAGATCGACCCGGACGTGGTGAAAAGCTTCATGTACCAGCTGCTGCGCGGGCTCGCCTTCTGCCACAGCCACAACGTGCTGCACCGGGATCTGAAGCCGCAGAACCTGCTGATCAATAAGAACGGCGAGCTGAAGCTGGCCGACTTTGGGCTGGCCCGCGCGTTCGGCATACCGGTCAAGTGCTACTCGGCGGAAGTGGTGACGCTCTGGTACCGGCCGCCGGACGTACTCTTCGGTGCCAAGCTGTACAC]

[+] EMBL BM611780             [CCGCAAAAACAATTCCGCACGCATTTGTTTTTGCTCGTCGCGTATAGTTTGGGTGCATTAGCTACGCAAAAAAGGTCATTATTTTTCGTCTAAAACATATCCCTCCTCCACCCATACAGCCGTTGCACTACCACCGCCCGCAGCAACCCCTCACCATGCAGAAGTACGAAAAGCTCGAGAAAATCGGCGAAGGTACGTACGGTACCGTGTTCAAGGGTAAGAACCGAGACACGCTCGAAATCGTCGCCCTGAAGCGGGTCCGGCTGGACGAGGACGACGAGGGTGTGCCGAGCTCGGCGCTGCGCGAAATCTGTCTGCTGAAGGAGCTGAAGCACAAAAACATCGTCCGGCTGTACGACGTGCTGCACTCGGACAAGAAGCTAACGCTCGTGTTCGAGCACTGCGACCAGGATCTGAAGAAGTACTTCGACAGCCTGAACGGCGAGATCGACCCGGACGTGGTGAAAAGCTTCATGTACCAGCTGCTGCGCGGGCTCGCCTTCTGCCACAGCCACAACGTGCTGCACCGGGATCTGAAGCCGCAGAACCTGCTGATCAATAAGAACGGCGAGCTGAAGCTGGCCGACTTTGGGCTGGCCCGCGCGTTCGGCATACCGGTCAAGTGCTACTCGGCGGAAGTGGTGACGCTCTGGTACCGGCCGCCGGACGTACTCTTCGGTGCCAAGCTGTACAC]
[+] EMBL BM583846             [                ccgCGCATTTGTTTTTGCTCGTCGCGTATAGTTTGGGTGCATTAGCTACGCAAAAAAGGTCATTATTTTTCGTCTAAAACATATCCCTCCTCCACCCATACAGCCGTTGCACTACCACCGCCCGCAGCAACCCCTCACCATGCAGAAGTACGAAAAGCTCGAGAAAATCGGCGAAGGTACGTACGGTACCGTGTTCAAGGGTAAGAACCGAGACACGCTCGAAATCGTCGCCCTGAAGCGGGTCCGGCTGGACGAGGACGACGAGGGTGTGCCGAGCTCGGCGCTGCGCGAAATCTGTCTGCTGAAGGAGCTGAAGCACAAAAACATCGTCCGGCTGTACGACGTGCTGCACTCGGACAAGAAGCTAACGCTCGTGTTCGAGCACTGCGACCAGGATCTGAAGAAGTACTTCGACAGCCTGAACGGCGAGATCGACCCGGACGTGGTGAAAAGCTTCATGTACCAGCTGCTGCGCGGGCTCGCCTTCTGCCACAGCCACAACGTGCTGCACCGGGATCTGAAGCCGCAGAACCTGCTGATCAATAAGAACGGCGAGCTGAAGCTGGCCGACTTTGGGCTGGCCCGCGCGTTCGGCATACCGGTCAAGTGCTACTCGGCGGAAGTGGTGACGCTCTGGTACCGGCCGCCGGA                           ]




>consensus_4323#0
CCGCAAAAACAATTCCGCACGCATTTGTTTTTGCTCGTCGCGTATAGTTTGGGTGCATTA
GCTACGCAAAAAAGGTCATTATTTTTCGTCTAAAACATATCCCTCCTCCACCCATACAGC
CGTTGCACTACCACCGCCCGCAGCAACCCCTCACCATGCAGAAGTACGAAAAGCTCGAGA
AAATCGGCGAAGGTACGTACGGTACCGTGTTCAAGGGTAAGAACCGAGACACGCTCGAAA
TCGTCGCCCTGAAGCGGGTCCGGCTGGACGAGGACGACGAGGGTGTGCCGAGCTCGGCGC
TGCGCGAAATCTGTCTGCTGAAGGAGCTGAAGCACAAAAACATCGTCCGGCTGTACGACG
TGCTGCACTCGGACAAGAAGCTAACGCTCGTGTTCGAGCACTGCGACCAGGATCTGAAGA
AGTACTTCGACAGCCTGAACGGCGAGATCGACCCGGACGTGGTGAAAAGCTTCATGTACC
AGCTGCTGCGCGGGCTCGCCTTCTGCCACAGCCACAACGTGCTGCACCGGGATCTGAAGC
CGCAGAACCTGCTGATCAATAAGAACGGCGAGCTGAAGCTGGCCGACTTTGGGCTGGCCC
GCGCGTTCGGCATACCGGTCAAGTGCTACTCGGCGGAAGTGGTGACGCTCTGGTACCGGC
CGCCGGACGTACTCTTCGGTGCCAAGCTGTACAC

consensusID : consensus_4323#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 371
fasta sequence

                              [CCGTTTGTTTTTGCTAGTCGCGTATAGTTTGGGTGCATTAGCTACGCAAAAAAAAAAAAATACAGGTCATTATTTTCAGGCTAAAACGTATCTCTCCTCCACCCATACAGCCGTTGCACTACCACCGCCCGCAGCAACCCCTCACCATGCAGAAGTACGAAAAGCTCGAAAAAATCGGCGAAGGTACGTACGGTACCGTGTTCAAGGGTAAGAACCGGGACACGCTCGAAATCGTCGCCCTGAAGCGGGTCCGGCTGGACGAGGACGACGAGGGTGTGCCGAGCTCGGCGCTGCGCGAAATCTGTCTGCTGAAGGAGCTGAAGCACAAAAACATCGTCCGGCTGTACGACGTGCTGCACTCGGACAAGAAG]

[+] EMBL BM629914             [CCGTTTGTTTTTGCTAGTCGCGTATAGTTTGGGTGCATTAGCTACGCAAAAAAAAAAAAATACAGGTCATTATTTTCAGGCTAAAACGTATCTCTCCTCCACCCATACAGCCGTTGCACTACCACCGCCCGCAGCAACCCCTCACCATGCAGAAGTACGAAAAGCTCGAAAAAATCGGCGAAGGTACGTACGGTACCGTGTTCAAGGGTAAGAACCGGGACACGCTCGAAATCGTCGCCCTGAAGCGGGTCCGGCTGGACGAGGACGACGAGGGTGTGCCGAGCTCGGCGCTGCGCGAAATCTGTCTGCTGAAGGAGCTGAAGCACAAAAACATCGTCCGGCTGTACGACGTGCTGCACTCGGACAAGAAG]




>consensus_4323#1
CCGTTTGTTTTTGCTAGTCGCGTATAGTTTGGGTGCATTAGCTACGCAAAAAAAAAAAAA
TACAGGTCATTATTTTCAGGCTAAAACGTATCTCTCCTCCACCCATACAGCCGTTGCACT
ACCACCGCCCGCAGCAACCCCTCACCATGCAGAAGTACGAAAAGCTCGAAAAAATCGGCG
AAGGTACGTACGGTACCGTGTTCAAGGGTAAGAACCGGGACACGCTCGAAATCGTCGCCC
TGAAGCGGGTCCGGCTGGACGAGGACGACGAGGGTGTGCCGAGCTCGGCGCTGCGCGAAA
TCTGTCTGCTGAAGGAGCTGAAGCACAAAAACATCGTCCGGCTGTACGACGTGCTGCACT
CGGACAAGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4323#0      CCGCAAAAACAATTCCGCACGCATTTGTTTTTGCTCGTCGCGTATAGTTTGGGTGCATTA 60
consensus_4323#1      --------------------CCGTTTGTTTTTGCTAGTCGCGTATAGTTTGGGTGCATTA 40
                                           * ************ ************************

consensus_4323#0      GCTACGCAAAAAA-----------GGTCATTATTTTTCGTCTAAAACATATCCCTCCTCC 109
consensus_4323#1      GCTACGCAAAAAAAAAAAAATACAGGTCATTATTTTCAGGCTAAAACGTATCTCTCCTCC 100
                      *************           ************  * ******* **** *******

consensus_4323#0      ACCCATACAGCCGTTGCACTACCACCGCCCGCAGCAACCCCTCACCATGCAGAAGTACGA 169
consensus_4323#1      ACCCATACAGCCGTTGCACTACCACCGCCCGCAGCAACCCCTCACCATGCAGAAGTACGA 160
                      ************************************************************

consensus_4323#0      AAAGCTCGAGAAAATCGGCGAAGGTACGTACGGTACCGTGTTCAAGGGTAAGAACCGAGA 229
consensus_4323#1      AAAGCTCGAAAAAATCGGCGAAGGTACGTACGGTACCGTGTTCAAGGGTAAGAACCGGGA 220
                      ********* *********************************************** **

consensus_4323#0      CACGCTCGAAATCGTCGCCCTGAAGCGGGTCCGGCTGGACGAGGACGACGAGGGTGTGCC 289
consensus_4323#1      CACGCTCGAAATCGTCGCCCTGAAGCGGGTCCGGCTGGACGAGGACGACGAGGGTGTGCC 280
                      ************************************************************

consensus_4323#0      GAGCTCGGCGCTGCGCGAAATCTGTCTGCTGAAGGAGCTGAAGCACAAAAACATCGTCCG 349
consensus_4323#1      GAGCTCGGCGCTGCGCGAAATCTGTCTGCTGAAGGAGCTGAAGCACAAAAACATCGTCCG 340
                      ************************************************************

consensus_4323#0      GCTGTACGACGTGCTGCACTCGGACAAGAAGCTAACGCTCGTGTTCGAGCACTGCGACCA 409
consensus_4323#1      GCTGTACGACGTGCTGCACTCGGACAAGAAG----------------------------- 371
                      *******************************                             

consensus_4323#0      GGATCTGAAGAAGTACTTCGACAGCCTGAACGGCGAGATCGACCCGGACGTGGTGAAAAG 469
consensus_4323#1      ------------------------------------------------------------
                                                                                  

consensus_4323#0      CTTCATGTACCAGCTGCTGCGCGGGCTCGCCTTCTGCCACAGCCACAACGTGCTGCACCG 529
consensus_4323#1      ------------------------------------------------------------
                                                                                  

consensus_4323#0      GGATCTGAAGCCGCAGAACCTGCTGATCAATAAGAACGGCGAGCTGAAGCTGGCCGACTT 589
consensus_4323#1      ------------------------------------------------------------
                                                                                  

consensus_4323#0      TGGGCTGGCCCGCGCGTTCGGCATACCGGTCAAGTGCTACTCGGCGGAAGTGGTGACGCT 649
consensus_4323#1      ------------------------------------------------------------
                                                                                  

consensus_4323#0      CTGGTACCGGCCGCCGGACGTACTCTTCGGTGCCAAGCTGTACAC 694
consensus_4323#1      ---------------------------------------------