These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4336#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGCGGAAAAGGCCGGAAAAATAGCGGGCAGCAGCCCGCGCACAGGGAGAGCGAGCGTGAGAGTGGCTGTTGCGGTGAAGAAGCGTTCGAAAAACCGTTGCGCGTTTGCACGTGGTTCGTGCGAGTCGTTGCAATCAGTAGACTTGACGTCTCCATCGCAGGCGAACGCGCCTTCGGTGCCGAGCCGTTGCGGAACAGTGTAATTTTGTAAGGCACAGGGGCACAGATGACAGTATTAAGAGATTGGTGATCTACAAATTTGGGTGTAAAGTGTTGTGCAAAAGCTTTTTCTAAAGTGTACAAACAGTGCTGTTTATGCAGTTGGTTAGAAAAGGGAACAGAATGAAACAAATCCCTTTAGCGCCTCGCTGAGGTGTCTTCTGGTGGAGTGATTGTGTCGCAAGTGAACCAAGTTCCGGTGCATACGAAATCTGCTTACTGGATCAAGAGTGTCCTCTTTCCTTTTCCTCTCTTCCTCCGAAACACTTACTTGCCTTGCTCTACTCCCCAATCCCTGTCTCTCTCCCTCTTGCCCATCATCCAATGTACACCTTTCGACGGACGGAGCACTGCAACGGAGTTTCCATTTTCGCGTACCCAGGACCGACGTAATCGGAGGATCGTGCGAAATGTGTCCACGTGCTGAACACTCAAGCAGCA] [+] EMBL BM655715 [CCGCCCACGCGTCCGCCCACGCGTCCGGCGGAAAAGGCCGGAAAAATAGCGGGCAGCAGCCCGCGCACAGGGAGAGCGAGCGTGAGAGTGGCTGTTGCGGTGAAGAAGCGTTCGAAAAACCGTTGCGCGTTTGCACGTGGTTCGTGCGAGTCGTTGCAATCAGTAGACTTGACGTCTCCATCGCAGGCGAACGCGCCTTCGGTGCCGAGCCGTTGCGGAACAGTGTAATTTTGTAAGGCACAGGGGCACAGATGACAGTATTAAGAGATTGGTGATCTACAAATTTGGGTGTAAAGTGTTGTGCAAAAGCTTTTTCTAAAGTGTACAAACAGTGCTGTTTATGCAGTTGGTTAGAAAAGGGAACAGAATGAAACAAATCCCTTTAGCGCCTCGCTGAGGTGTCTTCTGGTGGAGTGATTGTGTCGCAAGTGAACCAAGTTCCGGTGCATACGAAATCTGCTTACTGGATCAAGAGTGTCCTCTTTCCTTTTCCTCTCTTCCTCCGAAACACTTACTTGCCTTGCTCTACTCCCCAATCCCTGTCTCTCTCCCTCTTGCCCATCATCCAATGTACACCTTTCGACGGACGGAGCACTGCAACGGAGTTTCCATTTTCGCGTACCCAGGACCGACGTAATCGGAGGATCGTGCGAAATGTGTCCACGTGCTGAACACTCAAGCAGCA] consensusID : consensus_4336#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 630 fasta sequence [CCGCAGCATCGCAAACGCGGAAAAGGCCGGAAAAATAGCGGGCAGCAGCCCGCGCACAGGGAGAGCGAGCGTGAGAGTGGCTGTTGCGGTGAAGAAGCGTTCGAAAAACCGTTGCGCGTTTGCACGTGGTTCGTGCGAGTCGTTGCAATCAGTAGACTTGACGTCTCCATCGCAGGCGAACGCGCCTTCGGTGCCGAGCCGTTGCGGAACAGTGTAATTTTGTAAGGCACAGGGGCACAGATGACAGTATTAAGAGATTGGTGATCTACAAATTTGGGTGTAAAGTGTTGTGCAAAAGCTTTTTCTAAAGTGTACAAACAGTGCTGTTTATGCAGTTGGTCAGAAAAGGGAACAGAATGAAACAAATCCCTTTAGCGCCTCGCTGAGGTGTCTTCTGGTGGAGTGATTGTGTCGCAAGTGAACCAAGTTCCGGTGCATACGAAATCTGCTTACTGGATCAAGAGTGTCCTCTTTCCTTTTCCTCTCTTCCTCCGAAACACTTACTTGCCTTCCTCTACTCCCCAATCCCGCTATCTCTCTCTTCCTCTCGCCCATCATCAAATGTACACCTTTCGACGGACGGAGCACTGCAACGGAGTTTCCATTTTCGCGTACCCAGGACCGACGTAA] [+] EMBL BM589272 [CCGCAGCATCGCAAACGCGGAAAAGGCCGGAAAAATAGCGGGCAGCAGCCCGCGCACAGGGAGAGCGAGCGTGAGAGTGGCTGTTGCGGTGAAGAAGCGTTCGAAAAACCGTTGCGCGTTTGCACGTGGTTCGTGCGAGTCGTTGCAATCAGTAGACTTGACGTCTCCATCGCAGGCGAACGCGCCTTCGGTGCCGAGCCGTTGCGGAACAGTGTAATTTTGTAAGGCACAGGGGCACAGATGACAGTATTAAGAGATTGGTGATCTACAAATTTGGGTGTAAAGTGTTGTGCAAAAGCTTTTTCTAAAGTGTACAAACAGTGCTGTTTATGCAGTTGGTCAGAAAAGGGAACAGAATGAAACAAATCCCTTTAGCGCCTCGCTGAGGTGTCTTCTGGTGGAGTGATTGTGTCGCAAGTGAACCAAGTTCCGGTGCATACGAAATCTGCTTACTGGATCAAGAGTGTCCTCTTTCCTTTTCCTCTCTTCCTCCGAAACACTTACTTGCCTTCCTCTACTCCCCAATCCCGCTATCTCTCTCTTCCTCTCGCCCATCATCAAATGTACACCTTTCGACGGACGGAGCACTGCAACGGAGTTTCCATTTTCGCGTACCCAGGACCGACGTAA] [+] EMBL BM652601 [ ccgGCATCGCAAACGCGGAAAAGGCCGGAAAAATAGCGGGCAGCAGCCCGCGCACAGGGAGAGCGAGCGTGAGAGTGGCTGTTGCGGTGAAGAAGCGTTCGAAAAACCGTTGCGCGTTTGCACGTGGTTCGTGCGAGTCGTTGCAATCAGTAGACTTGACGTCTCCATCGCAGGCGAACGCGCCTTCGGTGCCGAGCCGTTGCGGAACAGTGTAATTTTGTAAGGCACAGGGGCACAGATGACAGTATTAAGAGATTGGTGATCTACAAATTTGGGTGTAAAGTGTTGTGCAAAAGCTTTTTCTAAAGTGTACAAACAGTGCTGTTTATGCAGTTGGTCAGAAAAGGGAACAGAATGAAACAAATCCCTTTAGCGCCTCGCTGATGTGTCTTCTGGTGGAGTGATTGTGTCGCAAGTGAACCAAGTTCCGGTGCATACGAAATCTGCTTACTGGATCAAGAGTGTCCTCTTTCCTTTTCCTCTCTTCCTCCGAAACACTTACTTGCCTTCCTCTACTCCCCAATCCCGCTATCTCTCTCTTCCTCTCGCCCATCATCAAATGTACACCTTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4336#0 CCGCCCACGCGTCCGCCCACGCGTCCGGCGGAAAAGGCCGGAAAAATAGCGGGCAGCAGC 60 consensus_4336#1 ------CCGCAGCATCGCAAACG-----CGGAAAAGGCCGGAAAAATAGCGGGCAGCAGC 49 *** * * ** ** ******************************** consensus_4336#0 CCGCGCACAGGGAGAGCGAGCGTGAGAGTGGCTGTTGCGGTGAAGAAGCGTTCGAAAAAC 120 consensus_4336#1 CCGCGCACAGGGAGAGCGAGCGTGAGAGTGGCTGTTGCGGTGAAGAAGCGTTCGAAAAAC 109 ************************************************************ consensus_4336#0 CGTTGCGCGTTTGCACGTGGTTCGTGCGAGTCGTTGCAATCAGTAGACTTGACGTCTCCA 180 consensus_4336#1 CGTTGCGCGTTTGCACGTGGTTCGTGCGAGTCGTTGCAATCAGTAGACTTGACGTCTCCA 169 ************************************************************ consensus_4336#0 TCGCAGGCGAACGCGCCTTCGGTGCCGAGCCGTTGCGGAACAGTGTAATTTTGTAAGGCA 240 consensus_4336#1 TCGCAGGCGAACGCGCCTTCGGTGCCGAGCCGTTGCGGAACAGTGTAATTTTGTAAGGCA 229 ************************************************************ consensus_4336#0 CAGGGGCACAGATGACAGTATTAAGAGATTGGTGATCTACAAATTTGGGTGTAAAGTGTT 300 consensus_4336#1 CAGGGGCACAGATGACAGTATTAAGAGATTGGTGATCTACAAATTTGGGTGTAAAGTGTT 289 ************************************************************ consensus_4336#0 GTGCAAAAGCTTTTTCTAAAGTGTACAAACAGTGCTGTTTATGCAGTTGGTTAGAAAAGG 360 consensus_4336#1 GTGCAAAAGCTTTTTCTAAAGTGTACAAACAGTGCTGTTTATGCAGTTGGTCAGAAAAGG 349 *************************************************** ******** consensus_4336#0 GAACAGAATGAAACAAATCCCTTTAGCGCCTCGCTGAGGTGTCTTCTGGTGGAGTGATTG 420 consensus_4336#1 GAACAGAATGAAACAAATCCCTTTAGCGCCTCGCTGAGGTGTCTTCTGGTGGAGTGATTG 409 ************************************************************ consensus_4336#0 TGTCGCAAGTGAACCAAGTTCCGGTGCATACGAAATCTGCTTACTGGATCAAGAGTGTCC 480 consensus_4336#1 TGTCGCAAGTGAACCAAGTTCCGGTGCATACGAAATCTGCTTACTGGATCAAGAGTGTCC 469 ************************************************************ consensus_4336#0 TCTTTCCTTTTCCTCTCTTCCTCCGAAACACTTACTTGCCTTGCTCTACTCCCCAATCCC 540 consensus_4336#1 TCTTTCCTTTTCCTCTCTTCCTCCGAAACACTTACTTGCCTTCCTCTACTCCCCAATCCC 529 ****************************************** ***************** consensus_4336#0 ----TGTCTCTCTCCCTCTTGCCCATCATCCAATGTACACCTTTCGACGGACGGAGCACT 596 consensus_4336#1 GCTATCTCTCTCTTCCTCTCGCCCATCATCAAATGTACACCTTTCGACGGACGGAGCACT 589 * ******* ***** ********** ***************************** consensus_4336#0 GCAACGGAGTTTCCATTTTCGCGTACCCAGGACCGACGTAATCGGAGGATCGTGCGAAAT 656 consensus_4336#1 GCAACGGAGTTTCCATTTTCGCGTACCCAGGACCGACGTAA------------------- 630 ***************************************** consensus_4336#0 GTGTCCACGTGCTGAACACTCAAGCAGCA 685 consensus_4336#1 ----------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||