These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4351#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 883 fasta sequence [GCAAGATCGGCACGATGGGCGTTGCATACTCTCTCTTTCGTCGCCTTGTTAAGGACGGGGGAAGAGAATGTCGGCCGCAGACGTTTGTGCAGCGAAAACATTGTTGAATTTTTTTCTTCTTTTAATTATCTTTTGCATAATATAACCTTTATACTTTTAGTGCGTTTTATTCTAGTTGTACTACCTGTGTGCGTGTACTTTGTACGCCAAATTGAGTTGGTGCCAAGCATTGTGATTTTCGGTCGGCTTAATAAGCAGCCGACTGTTAAAATTTTGATTAACATTTATAACTTTTTCCTTTTTGTCTGTTTTGTAAACTACTACACGACCCCTTGGGGGCGAACAACGAAGGCAATAATGTTTTGGCGATCCCTTCAAACCTAATGCCTGGACACATCCGTGCGCATCATTCCGAACGGAAGGTTCTCCGTGATGGTGGTGGAGTGTGTGTGCATCGTGTATTGTTCACAACAGTTATGCTCAAGCGAAGCGAAGCGGTACATGTTTTGGGATCCACACAACTGTTCCCTTTGTTTGTTTTCCTGGCTAATAGCCGGACAATGCAAACTTACTTCCAACGTGTTTCAGAGCCTTTCTCTGCCGCAAACGTACCTTCCTTCCACATTCGTACTATTATCGCCCAGTAGCGAATAACTGTTCACTTCAACTTGGTACTTCTGTAAGCCCACCGGCCAGCAGGCGATCGTGGTAAGAAGTATTGGGGACGCCATTAAACTTTGGGCAAACGTTGGCGAAAAACGACTTGAAGCCAACCCAAGGGCGNGTGTTACACGCCTNGATCGCATCNATGGGGAACCACCGGGAAAGCGGGATAATTCCGGGTACCAGCNTTCGCATTTGGGGACCCTNTCGCCACATCTCG] [+] EMBL BX468453 [GCAAGATCGGCACGATGGGCGTTGCATACTCTCTCTTTCGTCGCCTTGTTAAGGACGGGGGAAGAGAATGTCGGCCGCAGACGTTTGTGCAGCGAAAACATTGTTGAATTTTTTTCTTCTTTTAATTATCTTTTGCATAATATAACCTTTATACTTTTAGTGCGTTTTATTCTAGTTGTACTACCTGTGTGCGTGTACTTTGTACGCCAAATTGAGTTGGTGCCAAGCATTGTGATTTTCGGTCGGCTTAATAAGCAGCCGACTGTTAAAATTTTGATTAACATTTATAACTTTTTCCTTTTTGTCTGTTTTGTAAACTACTACACGACCCCTTGGGGGCGAACAACGAAGGCAATAATGTTTTGGCGATCCCTTCAAACCTAATGCCTGGACACATCCGTGCGCATCATTCCGAACGGAAGGTTCTCCGTGATGGTGGTGGAGTGTGTGTGCATCGTGTATTGTTCACAACAGTTATGCTCAAGCGAAGCGAAGCGGTACATGTTTTGGGATCCACACAACTGTTCCCTTTGTTTGTTTTCCTGGCTAATAGCCGGACAATGCAAACTTACTTCCAACGTGTTTCAGAGCCTTTCTCTGCCGCAAACGTACCTTCCTTCCACATTCGTACTATTATCGCCCAGTAGCGAATAACTGTTCACTTCAACTTGGTACTTCTGTAAGCCCACCGGCCAGCAGGCGATCGTGGTAAGAAGTATTGGGGACGCCATTAAACTTTGGGCAAACGTTGGCGAAAAACGACTTGAAGCCAACCCAAGGGCGNGTGTTACACGCCTNGATCGCATCNATGGGGAACCACCGGGAAAGCGGGATAATTCCGGGTACCAGCNTTCGCATTTGGGGACCCTNTCGCCACATCTCG] consensusID : consensus_4351#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 856 fasta sequence [AGAATCCCCCGAGGTTATGGTGCAGGTGCATGGTTGGAGTGATAAAACACGGTAAATTTATCAGTAGGGCCAGCTATTAGTGCCAGTAGTAGGTGAGACACGAGGCACACGAGAGACCAAAAGTGCGTACGGTTTTTTTTTAGAAGAGGCAAGTCCTGATAATGTACTCTAGAGCACAGCGATAGGCACACTCAAGCCTCTGAAAGGAAGCAATCATCATCGTGTGTGGGTGTGGGTGGG--TTTTTTTCTTTCGCAAACACATGGTGTTTGGTGTATTGGCTGCTGTGCCCATGTAGCTATAACTTCGACGTTTTCCGTCGTTGCATAGCGTTGCCATAATCTCTCTTTCGTCGCCTTGTTAAGGACGGGGGAAGAGAATGTCGG-CGCAGACGTTTGTGCAGCGAAAACCATTGTTGAATTTTTTTCTTCTTTTAATTATCTTTTGCATAAGATATAACCTTTATACTTTTAGTGCG-TTTATTCTAGTTGTACTAACTGGTGGTTGCGTGTACTTTGGTACGCCAAATTGGAGTTGGTGCCAAGCATTGTGATTNTTCGGTCGGCTTAATAAGGCAGCCGACTGTT-AAATTTTGATTAACATTGATAACTTTTTCCTTTTTGTCTGTTTTGTAAACTACTACACGACCCCTTGGGGGCGAACAACGAAGGCAATAATGTTTTGGCGATCCCTTCAAACCTAATGCCTGGACACATCCGTGCGCATCATTCCGAACGGAAGGTTCTCCGTGATGGTGGTGGAGTGTGTGTGCATCGTGTATTGTTCACAACAGTTATGCTCAAGCGAAGCGAAGCGGTACATGTTTTGGGATCCACACAACTGTTCCCTTTGATTTGT] [+] EMBL AL931008 [AGAATCCCCCGAGGTTATGGTGCAGGTGCATGGTTGGAGTGATAAAACACGGTAAATTTATCAGTAGGGCCAGCTATTAGTGCCAGTAGTAGGTGAGACACGAGGCACACGAGAGACCAAAAGTGCGTACGGTTTTTTTTTAGAAGAGGCAAGTCCTGATAATGTACTCTAGAGCACAGCGATAGGCACACTCAAGCCTCTGAAAGGAAGCAATCATCATCGTGTGTGGGTGTGGGTGGG TTTTTTTCTTTCGCAAACACATGGTGTTTGGTGTATTGGCTGCTGTGCCCATGTAGCTATAACTTCGACGTTTTCCGTCGTTGCATAGCGTTGCCATAATCTCTCTTTCGTCGCCTTGTTAAGGACGGGGGAAGAGAATGTCGG CGCAGACGTTTGTGCAGCGAAAACCATTGTTGAATTTTTTTCTTCTTTTAATTATCTTTTGCATAAGATATAACCTTTATACTTTTAGTGCG TTTATTCTAGTTGTACTAACTGGTGGTTGCGTGTACTTTGGTACGCCAAATTGGAGTTGGTGCCAAGCATTGTGATTNTTCGGTCGGCTTAATAAGGCAGCCGACTGTT AAATTTTGATT ] [+] EMBL BM600664 [ ccgATCATCGTGTGTGGGTGTGGGTGGGTTTTTTTTTCTTTCGCAAACACATGGTGTTTGGTGTATTGGCTGCTGTGCCCATGTAGCTATAACTACGACGTTTTCCGTCGTTGCATAGCGTTGCCATACTCTCTCTTTCGTCGCCTTGTTAAGGACGGGGGAAGAGAATGTCGGCCGCAGACGTTTGTGCAGCGAAAA CATTGTTGAATTTTTTTCTTCTTTTAATTATCTTTTGCATAAGATATAACCTTTATACTTTTAGTGCGTTTTATTCTAGTTGTACTACCT GTG TGCGTGTACTTT GTACGCCAAATT GAGTTGGTGCCAAGCATTGTGATT TTCGGTCGGCTTAA GCAGCTGATTGTTAAAATTTTGATTAACATTGATAACTTTTTCCTTTTTGTCTGTTTTGTAAACTACTACACGACCCCTTGGGGGCGAACAACGAAGGCAATAATGTTTTGGCGATCCCTTCAAACCTAATGCCTGGACACATCCGTGCGCATCATTCCGAACGGAAGGTTCTCCGTGATGGTGGTGGAGTGTGTGTGCATCGTGTATTGTTCACAACAGTTATGCTCAAGCGAAGCGAAGCGGTACATGTTTTGGGATCCACACAACTGTTCCCTTTGATTTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4351#0 ------------------------------------------------------------ consensus_4351#1 AGAATCCCCCGAGGTTATGGTGCAGGTGCATGGTTGGAGTGATAAAACACGGTAAATTTA 60 consensus_4351#0 ------------------------------------------------------------ consensus_4351#1 TCAGTAGGGCCAGCTATTAGTGCCAGTAGTAGGTGAGACACGAGGCACACGAGAGACCAA 120 consensus_4351#0 ------------------------------------------------------------ consensus_4351#1 AAGTGCGTACGGTTTTTTTTTAGAAGAGGCAAGTCCTGATAATGTACTCTAGAGCACAGC 180 consensus_4351#0 ------------------------------------------------------------ consensus_4351#1 GATAGGCACACTCAAGCCTCTGAAAGGAAGCAATCATCATCGTGTGTGGGTGTGGGTGGG 240 consensus_4351#0 ----------------------------------------------------------GC 2 consensus_4351#1 TTTTTTTCTTTCGCAAACACATGGTGTTTGGTGTATTGGCTGCTGTGCCCATGTAGCTAT 300 consensus_4351#0 AAGATCGGCA--------CGATG---GGCGTTGC-ATACTCTCTCTTTCGTCGCCTTGTT 50 consensus_4351#1 AACTTCGACGTTTTCCGTCGTTGCATAGCGTTGCCATAATCTCTCTTTCGTCGCCTTGTT 360 ** *** * ** ** ******* *** ********************* consensus_4351#0 AAGGACGGGGGAAGAGAATGTCGGCCGCAGACGTTTGTGCAGCGAAAAC-ATTGTTGAAT 109 consensus_4351#1 AAGGACGGGGGAAGAGAATGTCGGC-GCAGACGTTTGTGCAGCGAAAACCATTGTTGAAT 419 ************************* *********************** ********** consensus_4351#0 TTTTTTCTTCTTTTAATTATCTTTTGCATAA--TATAACCTTTATACTTTTAGTGCGTTT 167 consensus_4351#1 TTTTTTCTTCTTTTAATTATCTTTTGCATAAGATATAACCTTTATACTTTTAGTGCGTTT 479 ******************************* *************************** consensus_4351#0 TATTCTAGTTGTACTACCTG-TG--TGCGTGTACTTTG-TACGCCAAATTG-AGTTGGTG 222 consensus_4351#1 -ATTCTAGTTGTACTAACTGGTGGTTGCGTGTACTTTGGTACGCCAAATTGGAGTTGGTG 538 *************** *** ** ************* ************ ******** consensus_4351#0 CCAAGCATTGTGATTTT-CGGTCGGCTTAATAAG-CAGCCGACTGTTAAAATTTTGATTA 280 consensus_4351#1 CCAAGCATTGTGATTNTTCGGTCGGCTTAATAAGGCAGCCGACTGTTAAA-TTTTGATTA 597 *************** * **************** *************** ********* consensus_4351#0 ACATTTATAACTTTTTCCTTTTTGTCTGTTTTGTAAACTACTACACGACCCCTTGGGGGC 340 consensus_4351#1 ACATTGATAACTTTTTCCTTTTTGTCTGTTTTGTAAACTACTACACGACCCCTTGGGGGC 657 ***** ****************************************************** consensus_4351#0 GAACAACGAAGGCAATAATGTTTTGGCGATCCCTTCAAACCTAATGCCTGGACACATCCG 400 consensus_4351#1 GAACAACGAAGGCAATAATGTTTTGGCGATCCCTTCAAACCTAATGCCTGGACACATCCG 717 ************************************************************ consensus_4351#0 TGCGCATCATTCCGAACGGAAGGTTCTCCGTGATGGTGGTGGAGTGTGTGTGCATCGTGT 460 consensus_4351#1 TGCGCATCATTCCGAACGGAAGGTTCTCCGTGATGGTGGTGGAGTGTGTGTGCATCGTGT 777 ************************************************************ consensus_4351#0 ATTGTTCACAACAGTTATGCTCAAGCGAAGCGAAGCGGTACATGTTTTGGGATCCACACA 520 consensus_4351#1 ATTGTTCACAACAGTTATGCTCAAGCGAAGCGAAGCGGTACATGTTTTGGGATCCACACA 837 ************************************************************ consensus_4351#0 ACTGTTCCCTTTG-TTTGTTTTCCTGGCTAATAGCCGGACAATGCAAACTTACTTCCAAC 579 consensus_4351#1 ACTGTTCCCTTTGATTTGT----------------------------------------- 856 ************* ***** consensus_4351#0 GTGTTTCAGAGCCTTTCTCTGCCGCAAACGTACCTTCCTTCCACATTCGTACTATTATCG 639 consensus_4351#1 ------------------------------------------------------------ consensus_4351#0 CCCAGTAGCGAATAACTGTTCACTTCAACTTGGTACTTCTGTAAGCCCACCGGCCAGCAG 699 consensus_4351#1 ------------------------------------------------------------ consensus_4351#0 GCGATCGTGGTAAGAAGTATTGGGGACGCCATTAAACTTTGGGCAAACGTTGGCGAAAAA 759 consensus_4351#1 ------------------------------------------------------------ consensus_4351#0 CGACTTGAAGCCAACCCAAGGGCGNGTGTTACACGCCTNGATCGCATCNATGGGGAACCA 819 consensus_4351#1 ------------------------------------------------------------ consensus_4351#0 CCGGGAAAGCGGGATAATTCCGGGTACCAGCNTTCGCATTTGGGGACCCTNTCGCCACAT 879 consensus_4351#1 ------------------------------------------------------------ consensus_4351#0 CTCG 883 consensus_4351#1 ---- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||