These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4359#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 989 fasta sequence [TTCGAACAACAGCTCGGAACCGATCAAAGATCACGACCACGTGCTGGAGCACAGTTTGCACCAGCTGTTGCGCGAGTTTCACCACAAAAACACGCACCACCCGTTCCCGCACCCGGCCAGCGGGCCGCTGGGCCCGAGCAAGAAGCGTATGCTGGCCGGTCCCTCGGCGTACGATCGGCACGAGCTGCTCGAGATGACGAAATCGCAAACGCTGCTCGAGCAGATCATTGCCCAGGCGCAGCACATTTTCACGCGCCGCCGCACGCAGTACGTGCTCGATACGGTGGCGCGGGACGTGAAGGATCCGATGATTACCTCGCACTGGAACGCGATGAACAGTCCGACGATGTCGTGCGTCAAGATTAACATCACCTCGCACGGGTACGATGCGAACCTGCGCACCTCGCTCGTAATCCACGTGAAGGAGCGCTCGCTGAAGTGTATCTGTCGCGACGGGCGCATCATGCACATGTCGTACGAGCCGCAGGAGCTGCGCGATCTGATCCTCTGCCAGATTAGCCAGCACCAGATCGTGTGTTTGCAGAATCTGGCCAAATGCATGGCGTGGCAGATACTGTCCAGCAGCAGCCATCTGGGCATTGGGTCGGTGGAACCGCTCGGCAATGCGAGCTCGTGCGTGCTGGCGTCGCCGAACAGTGATCGGCTGATTGCGGTACAGGTGCGGTGCGATTCGCAGATCGACGTGAAGGTGTTTATTGCCCAGAGCCCGGCGAANGACTTTTTCCCCGGTTCGTTGGTGCAGGGCCGCCACTGGGAAGCATTTGGGTGGACATTTTAAGGAGGTCCGGGTTGATAAGATGGANGGCAAGAATTTCCACAACAAAATGGAGTTCCTGATGGCAAGTCTCACCAGCCAGTCGTAGGGATCCGCATCGGAAGGTGGCAACAACGGCATCATCGATCACTTCATTCATTAACACATTCTTCCATCACTATCGTATTCGAGCTCTACTGAACGCGTAAATTTG] [+] EMBL BX623697 [TTCGAACAACAGCTCGGAACCGATCAAAGATCACGACCACGTGCTGGAGCACAGTTTGCACCAGCTGTTGCGCGAGTTTCACCACAAAAACACGCACCACCCGTTCCCGCACCCGGCCAGCGGGCCGCTGGGCCCGAGCAAGAAGCGTATGCTGGCCGGTCCCTCGGCGTACGATCGGCACGAGCTGCTCGAGATGACGAAATCGCAAACGCTGCTCGAGCAGATCATTGCCCAGGCGCAGCACATTTTCACGCGCCGCCGCACGCAGTACGTGCTCGATACGGTGGCGCGGGACGTGAAGGATCCGATGATTACCTCGCACTGGAACGCGATGAACAGTCCGACGATGTCGTGCGTCAAGATTAACATCACCTCGCACGGGTACGATGCGAACCTGCGCACCTCGCTCGTAATCCACGTGAAGGAGCGCTCGCTGAAGTGTATCTGTCGCGACGGGCGCATCATGCACATGTCGTACGAGCCGCAGGAGCTGCGCGATCTGATCCTCTGCCAGATTAGCCAGCACCAGATCGTGTGTTTGCAGAATCTGGCCAAATGCATGGCGTGGCAGATACTGTCCAGCAGCAGCCATCTGGGCATTGGGTCGGTGGAACCGCTCGGCAATGCGAGCTCGTGCGTGCTGGCGTCGCCGAACAGTGATCGGCTGATTGCGGTACAGGTGCGGTGCGATTCGCAGATCGACGTGAAGGTGTTTATTGCCCAGAGCCCGGCGAANGACTTTTTCCCCGGTTCGTTGGTGCAGGGCCGCCACTGGGAAGCATTTGGGTGGACATTTTAAGGAGGTCCGGGTTGATAAGATGGANGGCAAG ] [+] EMBL BX608460 [ GGTGGCCCGGGACGTGAAGGACCCGATGATTACCTCGCACTGGAACGCGATGAACAGTCCGACGATGTCGTGCGTCAAGATTAACATCACCTCGCACGGGTACGATGCGAACCTGCGCACCTCGCTCGTAATCCACGTGAAGGAGCGCTCGCTGAAGTGTATCTGTCGCGACGGGCGCATCATGCACATGTCGTACGAGCCGCAGGAGCTGCGCGATCTGATCCTCTGCCAGATTAGCCAGCACCAGATCGTGTGTTTGCAGAATCTGGCCAAATGCATGGCGTGGCAGATACTGTCCAGCAGCAGCCATCTGGGCATTGGGTCGGTGGAACCGCTCGGCAATGCGAGCTCGTGCGTGCTGGCGTCGCCGAACAGTGATCGGCTGATTGCGGTACAGGTGCGGTGCGATTCGCAGATCGATGTCAAGGTGTTTATTGCCCAGAGCCCGGCGAAGGACTTTTTCCCCGGTTCGTTGGTGCAGGGCCGCCACTGGG AGCATTTGGGTGGACATTTTAAGGAGGTCAGGTTTGATAAGATGGAGGGCAAGAATTTCCACAACAAAATGGAGTTCCTGATGGCAAGTCTCACCAGCCAGTCGTAGGGATCCGCATCGGAAGGTGGCAACAACGGCATCATCGATCACTTCATTCATTAACACATTCTTCCATCACTATCGTATTCGAGCTCTACTGAACGCGTAAATTTG] consensusID : consensus_4359#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence [AGCAGANTCGGCACGAGGCGGAGGTATGAAGAGTCCGGTTCGCCGCCCGCCAGCCCGTCCGGGTCGGGGGCNTGCCGGGACGGTCGCCTGCCCGAAGATCAACTCGGCGTTGCGCGTGAACGTGCCGACCGAGCTGCAGGGTGTGGCGTTCATCAAGGTCATCACGCAGAAGGACCAGGAAGATCTCTGCACCGCCACGGTCAACATGATGGGCTCGACGCAGCTGGTTCCGCAGGCCGGCGCCTGGCAGCAGACGCTCGAGTACGCCCAGAACGTGCTGTTCTGCAAGGAGCTGTTCAACCAGCTGGCCCGGGAAGCGGTCCAGCTGCAGGCACCGATCCCGCACGTCGTCGTGGGCAACCAGATCCGGGCGACGCTGCTCCCGGGCATCCAGCTCATCATNCAGCCTGTGCCACTCGACGTCCTCCGATTCCGAACAACAGCTCGGAACCGATCAAAGATCACGACCACGTGCTGGAGCACAGTTTGCACCAGCTGTTGCGCGAGTTTCCANCCACAAAAACACGCACCACCCGGTNNNCCGCACCCGGGCCAGCGGGGCCGCTNGGGGCCCCGAGCAAAGAAAGCGTATGCTGGGCCGGGTCCCTTCGGCNGTA] [+] EMBL BX619660 [AGCAGANTCGGCACGAGGCGGAGGTATGAAGAGTCCGGTTCGCCGCCCGCCAGCCCGTCCGGGTCGGGGGCNTGCCGGGACGGTCGCCTGCCCGAAGATCAACTCGGCGTTGCGCGTGAACGTGCCGACCGAGCTGCAGGGTGTGGCGTTCATCAAGGTCATCACGCAGAAGGACCAGGAAGATCTCTGCACCGCCACGGTCAACATGATGGGCTCGACGCAGCTGGTTCCGCAGGCCGGCGCCTGGCAGCAGACGCTCGAGTACGCCCAGAACGTGCTGTTCTGCAAGGAGCTGTTCAACCAGCTGGCCCGGGAAGCGGTCCAGCTGCAGGCACCGATCCCGCACGTCGTCGTGGGCAACCAGATCCGGGCGACGCTGCTCCCGGGCATCCAGCTCATCATNCAGCCTGTGCCACTCGACGTCCTCCGATTCCGAACAACAGCTCGGAACCGATCAAAGATCACGACCACGTGCTGGAGCACAGTTTGCACCAGCTGTTGCGCGAGTTTCCANCCACAAAAACACGCACCACCCGGTNNNCCGCACCCGGGCCAGCGGGGCCGCTNGGGGCCCCGAGCAAAGAAAGCGTATGCTGGGCCGGGTCCCTTCGGCNGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4359#0 TTCGAACAACAGCTCGGAACCGATCAAAGATCACGACCACGTGCTGGAGCACAGTTTGCA 60 consensus_4359#1 ------------------------------------------------------------ consensus_4359#0 CCAGCTGTTGCGCGAGTTTCACCACAAAAACACGCACCACCCGTTCCCGCACCCGGCCAG 120 consensus_4359#1 ------------------------------------------------------------ consensus_4359#0 CGGGCCGCTGGGCCCGAGCAAGAAGCGTATGCTGGCCGGTCCCTCGGCGTACGATCGGCA 180 consensus_4359#1 -----------------------------------------------AGCAGANTCGGCA 13 * * ****** consensus_4359#0 CGAGCTGCTCGAGATGACGAAATCGCAAACGCTGCTCGAGCAGATCATTGCCCAGGCGCA 240 consensus_4359#1 CGAGGCGGA-GGTATGAAGAGTCCG-GTTCGCCGCCCGC-CAGCCCGT---CCGGGTCGG 67 **** * * **** ** ** *** ** ** *** * * ** ** consensus_4359#0 GCACATTTTCACGCGCCGCCGCACGCAGTACGTGCTCGATACGGTGGCGCGGGACGTGAA 300 consensus_4359#1 GGGCNTGCCGGGACG--GTCGCCTGC--CCGAAGATCAACTCGGCGTTGCG---CGTGAA 120 * * * ** * *** ** * ** * *** * *** ****** consensus_4359#0 GGATCCGATGATTACCTCGCACTGGAACGCGATGAACAGTCCGACGATGTCGTGCGTCAA 360 consensus_4359#1 CGTGCCGA------CCGAGCTGCAGGGTGTGGCGTTCA--TCAAGGTCATCACGCAGAAG 172 * **** ** ** * * * * ** * * * ** ** * consensus_4359#0 GATTAACATCACCTC-GCACGGGTACGATGCGAACC-TGCGCACCTCGCTCGTAATCCAC 418 consensus_4359#1 GACCAGGAAGATCTCTGCACCGCCACGGTCAACATGATGGGCTCGACGCAGCTGGTTC-C 231 ** * * * *** **** * *** * * ** ** * *** * * * * consensus_4359#0 GTGAAGGAGCGCTCGCTGAAGTGTATCTGTCGCGACGGGCGCATCATGCACATGTCGTAC 478 consensus_4359#1 GCAGGCCGGCGCCTG-------GCAGCAGACGCT-CGAGTACGCCCAGAACGTGCTGTTC 283 * **** * * * * * *** ** * * * * ** ** ** * consensus_4359#0 GAGCCGCAGGAGCTGCGCGATCTGATCCTCTGCCAGATTAGCCAGCACCAGATCGTGTGT 538 consensus_4359#1 TGCA---AGGAGCTGTTCAACCAGCTGGCCCGGGAAGCGGTCCAGCTGCAGGCACCGATC 340 ******** * * * * * * * * ***** *** * consensus_4359#0 TTGCAGAATCTGGCCAAATGCATGGCGTGGCAGATACTGTCCAGCAGCAGCCATCTGGGC 598 consensus_4359#1 CCGCACGTCGTCGTGGGCAACCAGATCCGGGCGACGCTGCTCCCGGGCATCCAGCTCATC 400 *** * * * * ** ** *** * *** *** ** * consensus_4359#0 ATTGGGTCGGTGGAACCGCTCGGCAA--TGCGAGCTCGTGCGTGCTGGCGTCGCCGAACA 656 consensus_4359#1 ATNCAGCCTGTG---CCACTCGACGTCCTCCGATTCCGAACAACAGCTCGGAACCGATCA 457 ** * * *** ** **** * * *** ** * ** **** ** consensus_4359#0 GTGATCGGCTGATTGCGGTACAGGTGCGGTGCGATTCGCAGATCGACGTGAAGGTGTTTA 716 consensus_4359#1 AAGATCA--CGACCACG-TGCTGGAGCACAGTT-TGCACCAGCTGTTGCGCGAGTTTCCA 513 **** ** ** * * ** ** * * * * * * * ** * * consensus_4359#0 TTGCCCAGAGCCCGGCGAANGACTTTTTCCCCGGTTCGTTGGTGCAGGGCCGCCACTGGG 776 consensus_4359#1 NCCACAAAAAC---ACGCACCACCCGGTNNNCCGCAC-CCGGGCCAGCGGGGCCGCTNGG 569 * * * * ** * ** * * * * ** *** * *** ** ** consensus_4359#0 AAGCATTTGGGTGGACATTTTAAGGAGGTCCGGGTTGATAAGATGGANGGCAAGAATTTC 836 consensus_4359#1 GGCCCCGAGCAAAGAAAGCGTATGCTGGGCCGGGTCCCTTCGGCNGTA------------ 617 * * ** * ** * ** ****** * * * consensus_4359#0 CACAACAAAATGGAGTTCCTGATGGCAAGTCTCACCAGCCAGTCGTAGGGATCCGCATCG 896 consensus_4359#1 ------------------------------------------------------------ consensus_4359#0 GAAGGTGGCAACAACGGCATCATCGATCACTTCATTCATTAACACATTCTTCCATCACTA 956 consensus_4359#1 ------------------------------------------------------------ consensus_4359#0 TCGTATTCGAGCTCTACTGAACGCGTAAATTTG 989 consensus_4359#1 --------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||