These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4361#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 805 fasta sequence [CCGTGACCATTTAATTTATTGCGGAACCGGACAGGAAAAGCGTAAAATAGTTTTACCTAATTTTTGAAATCCATAGCTGTGTATATGTTTGTGATGTGGTGTAAAGCATGCAATGCAAGGAAGGGGTTTGTTGCATCCTGTTGTCTTGTTTAAGTGTCATTACTCTTCGTGTTCGTTAAACGGTCATGCTCGATTAGGTGCACTTCGTTTTTTTTTAATAATTTCTCTCTCTCCTAATGTCAAACTTATTATTCTTTAATTTTTAGTGTGAATAATGGATCATTCAACATATTTATTACCGTATTGTTAGTGCAAAATTTTTAAACAATGCAATTAGTGCAATGTTATTGTTCGTTTTCTTCTACCAAAAACATATTACTCGTAACGGATGGTGTATGTACAATGGCTAACATACGTAAAACACTATTACCTTTTTTAGGCATTAGGTCATTTTTGTATTTGTCAGACGAACAGCAGCAAAAAAAAAAACAAAAAACAAAACACAACAATTAAAATACTCATTTATTACTAC-TACTATTACTACTACCCAACACAGCCTTTAAGGTGTTGTTGATAAGCACTGCTGTGTGATTGTGTCTATTATTATAGTTCCCGGTTTTTCCCGCCCGTCTGCCTGAAGCATAAAAAATATGCCCCCCTTTTAAAAAGTGAAACGTTGCGGGGTTTACACACGGTGTTTAAAAGCAATGCAAACAACTGACGAAAAAAAAACACACACAACAACCCATGTACTTTTCATACCTATACAGCCGACATTGAATACTTTTTAAGAAAGTGTCATTTT] [+] EMBL BM575881 [CCGTGACCATTTAATTTATTGCGGAACCGGACAGGAAAAGCGTAAAATAGTTTTACCTAATTTTTGAAATCCATAGCTGTGTATATGTTTGTGATGTGGTGTAAAGCATGCAATGCAAGGAAGGGGTTTGTTGCATCCTGTTGTCTTGTTTAAGTGTCATTACTCTTCGTGTTCGTTAAACGGTCATGCTCGATTAGGTGCACTTCGTTTTTTTTTAATAATTTCTCTCTCTCCTAATGTCAAACTTATTATTCTTTAATTTTTAGTGTGAATAATGGATCATTCAACATATTTATTACCGTATTGTTAGTGCAAAATTTTTAAACAATGCAATTAGTGCAATGTTATTGTTCGTTTTCTTCTACCAAAAACATATTACTCGTAACGGATGGTGTATGTACAATGGCTAACATACGTAAAACACTATTACCTTTTTTAGGCATTAGGTCATTTTTGTATTTGTCAGACGAACAGCAGCAAAAAAAAAAACAAAAAACAAAACACAACAATTAAAATACTCATTTATTACTAC TACTATTACTACTACCCAACACAGCCTTTAAGGTGTTGTTGATAAGCACTGCTGTGTGATTGTGTCTATTATTATAGTTCCCGGTTTTTCCCGCCCGTCTGCCTGAAGCATAAAAAATATGCCCCCCTTTTAA ] [+] EMBL BM632081 [ ccGTGCACTTCATTTTTTTTAAATAATTTCTCTCTCTCCTAATGTCAAACTTATTATTCTTTAATTTTTAGTGTGAATAATGAATCATTCAACATATTTATTACCGTATTCTTAGTGCAAAATTTTTAAACAATGCAATTAGTGCAATGTTATTGTTCGTTTTCTTCTACCAAAAACATATTACTCGTAACGGATGGTGTATGTACAATGGCTAACATACGTAAAACACTATTACCTTTTTTAGGCATTAGGTCATTTTTGTATTTGTCAGACGAACAGCAG GAAAAAAAAACAAAAAACAA AACAATTCAAATACTCATTTATTACTACTTACTATTACTACTACCCAACACAGCCTTTAAGGTGTTGTTGATAAGCACTGCTGTGTGATTGTGTCTATTATTATAGTT CCGGTTTTTCCCGTTCGTCTGCCTGAAGCAT ACATATG CCCCATTTTAAAAAGTGAAACGTTGCGGGGTTTACACACGGTGTTTAAAAGCAATGCAAACAACTGACGAAAAAAAAACACACACAACAACCCATGTACTTTTCATACCTATACAGCCGACATTGAATACTTTTTAAGAAAGTGTCATTTT] consensusID : consensus_4361#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 401 fasta sequence [AGGCAGAANCGGCACGTGNNGCTGTTTTTTTTTTTTCCCTTATCAGTACATTCATATCATCGAGTTATTGTAGTTTTGTTGTTTTTGCTGTCAATAATATAGATATTCTCACTCATCAGATGCAGCTGTCCCTACGCGAACGAAGCTTTTGTCGCTATTTTATTTTTTACTTATTACTTTCATTTTTCTTCACTCTCGCCCTCTCTCTCTCTCTCTTTATGTATTGTAGTTTATAACACGATAATTGACAATAAAGAGTATGCTTTTNCAAAATGACACTATCTTAAGAAGTATTCAATGTCGGCTGTATAGGTATGAAAAGTCACATGGGTTGTTCGTGTGTGTTNTCGCGCANTAGCGTCAGGTGTGTTTGCCATTGCTTTNTAAAGCACCGGTGGTGT] [+] EMBL BX468897 [AGGCAGAANCGGCACGTGNNGCTGTTTTTTTTTTTTCCCTTATCAGTACATTCATATCATCGAGTTATTGTAGTTTTGTTGTTTTTGCTGTCAATAATATAGATATTCTCACTCATCAGATGCAGCTGTCCCTACGCGAACGAAGCTTTTGTCGCTATTTTATTTTTTACTTATTACTTTCATTTTTCTTCACTCTCGCCCTCTCTCTCTCTCTCTTTATGTATTGTAGTTTATAACACGATAATTGACAATAAAGAGTATGCTTTTNCAAAATGACACTATCTTAAGAAGTATTCAATGTCGGCTGTATAGGTATGAAAAGTCACATGGGTTGTTCGTGTGTGTTNTCGCGCANTAGCGTCAGGTGTGTTTGCCATTGCTTTNTAAAGCACCGGTGGTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4361#0 CCGTGACCATTTAATTTATTGCGGAACCGGACAGGAAAAGCGTAAAATAGTTTTACCTAA 60 consensus_4361#1 -------------------------------AGGCAGAANCGGCACGTGNNGCTGTTTTT 29 * * ** ** * * * * consensus_4361#0 TTTTTGAAATCCATAGCTGTGTATATGTTTGTGATGTGGTGTAAAGCATGCAATGCAAGG 120 consensus_4361#1 TTTTTTTCCCTTATCAGTACATTCATATCATCGAGTTATTGTA----------------- 72 ***** ** * * ** * ** * **** consensus_4361#0 AAGGGGTTTGTTGCATCCTGTTGTC--TTGTTTAAGTGTCATTACTCTTCGTGTTC-GTT 177 consensus_4361#1 ----GTTTTGTTGT-TTTTGCTGTCAATAATATAGATATTCTCACTCATCAGATGCAGCT 127 * ******* * ** **** * * ** * * * **** ** * * * * consensus_4361#0 AAACGGTCATGCTCGA----TTAGGTGC-ACTTCGTTTTTTTTTAATAATTTCTCTCTCT 232 consensus_4361#1 GTCCCTACGCGAACGAAGCTTTTGTCGCTATTTTATTTTTTACTTATTACTTTCATTTTT 187 * * * *** ** * ** * ** ****** * ** * ** * * * consensus_4361#0 CCTAATGTCAAACTTATTATTCTTTAATTTTTAGTGTGAATAATGGATCATTCAACATAT 292 consensus_4361#1 CTTCACTCTCGCCCTCTCTCTCTCTCTCTTT----ATGTATTGTAGTTTAT--AACACGA 241 * * * * * * *** * *** ** ** * * * ** **** consensus_4361#0 TTATTACCGTATTGTTAGTGCAAAATTTTTAAACAATGCAATTAGTGCAATGTTATTGTT 352 consensus_4361#1 TAATTGACA-ATAAAGAGTAT---GCTTTTNCAAAATGACACTATCTTAAGA--AGTATT 295 * *** * ** *** **** * **** * ** ** * * ** consensus_4361#0 CGTTTTCTTCTACCAAAAACATATTACTCGTAACGGATGGT-GTATGTACAATGGCTAAC 411 consensus_4361#1 CAATGTCGGCTGTATAGGTATGAAAAGTCACATGGGTTGTTCGTGTGTGTTNTCGCGCAN 355 * * ** ** * * * ** * ** ** * ** *** * ** * consensus_4361#0 ATACGTAAAACACTATTACCTTTTTTAGGCATTAGGTCATTTTTGTATTTGTCAGACGAA 471 consensus_4361#1 TAGCGTCAGGTGTGTTTGCCATTGCTTTNTAAAGCACCGGTGGTGT-------------- 401 *** * ** ** ** * * * * *** consensus_4361#0 CAGCAGCAAAAAAAAAAACAAAAAACAAAACACAACAATTAAAATACTCATTTATTACTA 531 consensus_4361#1 ------------------------------------------------------------ consensus_4361#0 CTACTATTACTACTACCCAACACAGCCTTTAAGGTGTTGTTGATAAGCACTGCTGTGTGA 591 consensus_4361#1 ------------------------------------------------------------ consensus_4361#0 TTGTGTCTATTATTATAGTTCCCGGTTTTTCCCGCCCGTCTGCCTGAAGCATAAAAAATA 651 consensus_4361#1 ------------------------------------------------------------ consensus_4361#0 TGCCCCCCTTTTAAAAAGTGAAACGTTGCGGGGTTTACACACGGTGTTTAAAAGCAATGC 711 consensus_4361#1 ------------------------------------------------------------ consensus_4361#0 AAACAACTGACGAAAAAAAAACACACACAACAACCCATGTACTTTTCATACCTATACAGC 771 consensus_4361#1 ------------------------------------------------------------ consensus_4361#0 CGACATTGAATACTTTTTAAGAAAGTGTCATTTT 805 consensus_4361#1 ---------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||