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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4362#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 839 fasta sequence
[GAATCGGCCCGAGGCTACACGGAAGACGTGTCGATGGCCGGAAATGGTGGAGGAAAATGTTGCTGAAACGGCTTCAAAAAACGAGGCACCCTCGGTGGAACGTCCTAAATCTCCACCAACAATCGCTTCATCCGCCACTCCTGTGGTAGCAGTGCCAGTAGCAACAGCGGCAGCGGCAGCAGCAGCAACACCGCCACCACCAGTGCCGGAGGCCAGTAAAAGTTCGACTACGCTAAAGGAGGAAGGCACGAATGGGGATGCGAAAGATACAGTTTCGAGCGAAAAGTTAACTGTCGATCAGGCAGTCGACTGTTGCACAGCCCGCGAATGAGCAAGTGAGTCAAGAGGCGAGCGACGGCTAAGGTGGAAATAATTCCCATCGAGGACAGTACCAGTAATTCTCCTGCTACGAATGATCCGTCCAGTGACGACAACAAAGACACCGGCGAAGAGTCGAGTGGACAAGAGCAGCCGGAAAGTGTGATTGTCGTGTCAGATTCAGGCAAGGAAGAGGAAGAGTTTGAGGAGCGGGACGGTAGGGTAAGCCCGAACGATGGACCCACAGCGATAGGAGGAGGATGAAGATTCCGACGACAAACCGNTAGCATCGCTGAGGTTACGGTCGGAAAGTTGCGCCCGGCGAGTCATGNATACAAGGCAGNTCCGCAAAGAGGACATCGGAANTCNGTGGCTAAGTAAACCCGGTTGCCAAGACTGCTCCCGGAAGCCACGAAAAAGGCGCAGCANCTCCCGGACCACCGAATGCTTTGCCGANACGGATTGTGCAAATCGGAAGCAGGTGACAANGTTNACCCNAGGTCCCCATGCACTCGATAGCG]
[+] EMBL BX468629 [GAATCGGCCCGAGGCTACACGGAAGACGTGTCGATGGCCGGAAATGGTGGAGGAAAATGTTGCTGAAACGGCTTCAAAAAACGAGGCACCCTCGGTGGAACGTCCTAAATCTCCACCAACAATCGCTTCATCCGCCACTCCTGTGGTAGCAGTGCCAGTAGCAACAGCGGCAGCGGCAGCAGCAGCAACACCGCCACCACCAGTGCCGGAGGCCAGTAAAAGTTCGACTACGCTAAAGGAGGAAGGCACGAATGGGGATGCGAAAGATACAGTTTCGAGCGAAAAGTTAACTGTCGATCAGGCAGTCGACTGTTGCACAGCCCGCGAATGAGCAAGTGAGTCAAGAGGCGAGCGACGGCTAAGGTGGAAATAATTCCCATCGAGGACAGTACCAGTAATTCTCCTGCTACGAATGATCCGTCCAGTGACGACAACAAAGACACCGGCGAAGAGTCGAGTGGACAAGAGCAGCCGGAAAGTGTGATTGTCGTGTCAGATTCAGGCAAGGAAGAGGAAGAGTTTGAGGAGCGGGACGGTAGGGTAAGCCCGAACGATGGACCCACAGCGATAGGAGGAGGATGAAGATTCCGACGACAAACCGNTAGCATCGCTGAGGTTACGGTCGGAAAGTTGCGCCCGGCGAGTCATGNATACAAGGCAGNTCCGCAAAGAGGACATCGGAANTCNGTGGCTAAGTAAACCCGGTTGCCAAGACTGCTCCCGGAAGCCACGAAAAAGGCGCAGCANCTCCCGGACCACCGAATGCTTTGCCGANACGGATTGTGCAAATCGGAAGCAGGTGACAANGTTNACCCNAGGTCCCCATGCACTCGATAGCG]
[+] EMBL BX606555 [ GTGGAGGAAAATGTTGCTGAAACGGCTTCAAAAAACGAGGCACCCTCGGTGGAACGTCCTAAATCTCCACCAACAATCGCTTCATCCGCCACTCCTGTGGTAGCAGTGCCAGTAGCAACAGCGGCAGCGGCAGCAGCAGCAACACCGCCACCACCAGTGCCGGAGGCCAGTAAAAGTTCGACTACGCTAAATGAGGAAGGCACGAATGGGGATGCGAAAGATACAGTTTCGAGCGAAAAGTTAACTGTCGATCA GCAGTCGACTGTTGCACAGCCCGCGAATGAGCAAGTGAGTCAAGAGGCGAGCGAC GCTAAGGTGGAAATAATTCCCATCGAGGACAGTACCAGTAATTCTCCTGCTACGAATGATCCGTCCAGTGACGACAACAAAGACACCGGCGAAGAGTCGAGTGGACAAGAGCAGCCGGAAAGTGTGATTGTCGTGTCAGATTCAGCCAAGGAAGAGGAAGAGTTTGAGGAGCGGGACGGTAGGGTAAGCCCGAACGATGGACCCACAGCGAT GGAGGAGGATGAAGATTC ]
consensusID : consensus_4362#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence
[CCGCGGACGGTAGCATCGCCAACCATCACAAATCTGCTTACAGGTGGTACGGGAAGCTCCGTCAAAGCGACTTCCTCAACGGCAGCCAGTGCTGCTGGATCACTTAGCGGGAATGAGCTGGATGCGCAGCTTGGTGTTACCATCAAGCAGGAAGCTATCGCCGCATCCACAAACATGTTCGATGGAAAAGAACCGCAGACCATAAAATTGGAAAATAAGGAAGATGGCAGCAATATGGAAGGTGCCACAGCATCTAAAACGGACGAGTCAAGCGGGCCAAAGTCCGAAGCGCTCTTCACAGAAATGGACAGCGAAGACAACGCAGATCCCGCGAAGGATCTGATGGACGTGTTGGAAGATCTGATTCCGGACGATTTGGATGAGATTTTAAATGAAGAGAGTGGTATGATACTGGAGGACGTCGATCTGAAGAATGTAGTCGATTCAATCATGGAGGAAGACAACTTGAAGGATAAGGACATTGGACTGATAGCGGACACGGAAGACGTGTCGATGGCAGAAATGGTGGAGGAAAATGTTGCTGAAACGGCTTCAAAAAACGAGGCA]
[+] EMBL BM589187 [CCGCGGACGGTAGCATCGCCAACCATCACAAATCTGCTTACAGGTGGTACGGGAAGCTCCGTCAAAGCGACTTCCTCAACGGCAGCCAGTGCTGCTGGATCACTTAGCGGGAATGAGCTGGATGCGCAGCTTGGTGTTACCATCAAGCAGGAAGCTATCGCCGCATCCACAAACATGTTCGATGGAAAAGAACCGCAGACCATAAAATTGGAAAATAAGGAAGATGGCAGCAATATGGAAGGTGCCACAGCATCTAAAACGGACGAGTCAAGCGGGCCAAAGTCCGAAGCGCTCTTCACAGAAATGGACAGCGAAGACAACGCAGATCCCGCGAAGGATCTGATGGACGTGTTGGAAGATCTGATTCCGGACGATTTGGATGAGATTTTAAATGAAGAGAGTGGTATGATACTGGAGGACGTCGATCTGAAGAATGTAGTCGATTCAATCATGGAGGAAGACAACTTGAAGGATAAGGACATTGGACTGATAGCGGACACGGAAGACGTGTCGATGGCAGAAATGGTGGAGGAAAATGTTGCTGAAACGGCTTCAAAAAACGAGGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4362#0 GAATCGGCCCGAGGCTACACGGAAGACGTGTCGATGGCCGGAAATGGTGGAGGAAAATGT 60
consensus_4362#1 ------------------------------------------------------------
consensus_4362#0 TGCTGAAACGGCTTCAAAAAACGAGGCACCCTCGGTGGAACGTCCTAAATCTCCACCAAC 120
consensus_4362#1 ------------------------------------------------------------
consensus_4362#0 AATCGCTTCATCCGCCACTCCTGTGGTAGCAGTGCCAGTAGCAACAGCGGCAGCGGCAGC 180
consensus_4362#1 -----------------------------------CCGCGG--ACGGTAGCATCGCCAAC 23
* * * ** * *** ** ** *
consensus_4362#0 AGCAGCAACACCGCC-ACCACCAGTGCCGGAGGC-CAGTAAAAGTTCGACTACGCTAAAG 238
consensus_4362#1 CATCACAAATCTGCTTACAGGTGGTACGGGAAGCTCCGTCAAAG--CGACTTCCTCAACG 81
*** * ** ** ** * *** ** * ** **** ***** * ** *
consensus_4362#0 GAGGAAGGCACGAATGGGGATGCGAAAGATACAGTTTCGAGCGAAAAGTTAACTGTCG-- 296
consensus_4362#1 GCAGCCAGTGCTGCTGGATCACTTAGCGGGAATGAGCTGGATGCGCAGCTTGGTGTTACC 141
* * * * *** * * * * * * ** * ***
consensus_4362#0 ATCAGGCAGTCGACTGTTGCACAGCCCGCGAATGAGCAAGTGAGTCAAGAGGCGAGCGAC 356
consensus_4362#1 ATCAAGCAGGAAGCTATCGCCGCATCCACAAACATGTTCGATGGAAAAGAACCGCA-GAC 200
**** **** ** * ** ** * ** * * * **** ** ***
consensus_4362#0 GGCTAAGGTGGAAATAATTCCCATCGAGGACAGTACCAGTAATTCTCCTGCTACGAATGA 416
consensus_4362#1 CATAAAATTGGAA---------AATAAGGAAGATGGCAGCAAT---------ATGGAAGG 242
** ***** * **** * *** *** * * * *
consensus_4362#0 TCCGTCCAGTGACGACAACAAAGACACCGGCGAAGAGTCGAGTGGACAAGAGCAGCCGGA 476
consensus_4362#1 T-------GCCACAGCATCTAAAACG-----GACGAGTCAAGCGGGCCAAAGT--CCGAA 288
* * ** ** * ** ** ** ***** ** ** * * ** *** *
consensus_4362#0 AAGTGTGATTGTCGTGTCAGATTCAGGCAAGGAAGAGGAAG-AGTTTGAGGAGCGGGACG 535
consensus_4362#1 GCGC-------TCTTCACAGAAATGGACAGCGAAGACAACGCAGATCCCGCGAAGGATCT 341
* ** * **** * ** ***** * * ** * * ** *
consensus_4362#0 GTAGGGTAAGCCCGAACGATGGACCCACAGCGATAGGAGGAGGATGAAGATTCCGACGAC 595
consensus_4362#1 GATGGACGTGTTGGAAGATCTGATTCCGGACGATTT-----GGATGAGATTTTAAATGAA 396
* ** * *** ** * **** ****** ** * **
consensus_4362#0 AAACCGNTAGCATCGCTGAGGTTACGGTCGGAAAGTTGCGCCCGGCGAGTCATGNATACA 655
consensus_4362#1 GAG--AGTGGTAT-------GATAC---TGGAGGACGTCGATC--TGAAGAATGTAGTCG 442
* * * ** * *** *** ** * ** *** * *
consensus_4362#0 AGGCAGNTCCGCAAAGAGGACATCGGAANTCNGTGGCTAAGTAAACCCGGTTGCCAAGAC 715
consensus_4362#1 ATTCAATCATG-GAGGAAGAC-----AACTTGAAGGATAAGGACATTGGACTG---ATAG 493
* ** * * ** *** ** * ** **** * * * ** * *
consensus_4362#0 TGCTCCCGGAAGCCACGAAAAAGGCGCAGCANCTCCCGGACCACCGAATGCTTTGCCGAN 775
consensus_4362#1 CGGACACGGAAGACGTGTCGATGGCAGAAATGGTGGAGGA-----AAATG--TTGCTGAA 546
* * ****** * * * *** * * *** **** **** **
consensus_4362#0 ACGGATTGTGCAAATCGGAAGCAGGTGACAANGTTNACCCNAGGTCCCCATGCACTCGAT 835
consensus_4362#1 ACGGCTTCAAAAAAC--GAGGCA------------------------------------- 567
**** ** *** ** ***
consensus_4362#0 AGCG 839
consensus_4362#1 ----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||