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Anopheles gambiae
cluster # 4370 cluster # 4370       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4370#0 length = 854 sequences # 2  
consensus_4370#1 length = 652 sequences # 1  

consensusID : consensus_4370#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 854
fasta sequence
                              [CTNGCACGAGGAAACCGTTCACGGGAATGACGCGCTCCGATTTGGAGCAACTGGTGCTGCAGAAGATCAGCGAAGCGCTGGTGTACAAATCGGATAATGCCGCATTGCGAGCGATTATCAAGAAGCAGGCTGTAAAGCTGCAAGGNTTGNGAGCGCAGCTTGGCGGACATGACGAGCCACTATGAGGCGCTAAAGCTGGTCGCCGATCGAGCGGTAGAGGACATGAAAAAGCGGGCCAACACTTACATCGCACCGGTGAAAATTACTCGCGCTGTTGGGCTGCAAGTGTCGAGGGGTGGATATGCAAGCGGAGACGGGTCACAAGCCGTCCAGCAGTAGTTCCGGAAAACGGAAGGGTGAATCAGCTGCCGTTGCCATGGCAACAGCAGCGGTGAACGGTGTTAGTGAGCATGGTGGCGGTATGCGCGAGGTTTCCAGTGAGATGGCGAAAAGACCCGGCCAGCAGGCAGTGATCGGTGGTGTGCAGCGTGTCACAGTGCAGCGGCATCATGTACCGAATAATGCACCGCAGATGATAACAACTCGCACGAGCCCAAACAATTCCACTACGGCGAACGGGGTGGCACGATCATTCAAACCTTATGTTGCGAAGCTTAGCAATACCGTGACAACGGTTGCCACGTTCACGCCACCGGTCACACCGAACAGACTGTCGATCAATGCCGGCGATGGTTCAAACGCAGTACCGGCGCTCAACAATACTCCACCACCCCTTGCCATTACCGCGACAAGCAGTGACTCCGGAACTAATAGCGTTTCGCCTGGAGTTGATAGTCCTGTGCGCAAAAAGCAACTGCAGAAAATTACTCCCATGCGGCCTCCACTGTCAGCGT]

[+] EMBL BX619827             [CTNGCACGAGGAAACCGTTCACGGGAATGACGCGCTCCGATTTGGAGCAACTGGTGCTGCAGAAGATCAGCGAAGCGCTGGTGTACAAATCGGATAATGCCGCATTGCGAGCGATTATCAAGAAGCAGGCTGTAAAGCTGCAAGGNTTGNGAGCGCAGCTTGGCGGACATGACGAGCCACTATGAGGCGCTAAAGCTGGTCGCCGATCGAGCGGTAGAGGACATGAAAAAGCGGGCCAACACTTACATCGCACCGGTGAAAATTACTCGCGCTGTTGGGCTGCAAGTGTCGAGGGGTGGATATGCAAGCGGAGACGGGTCACAAGCCGTCCAGCAGTAGTTCCGGAAAACGGAAGGGTGAATCAGCTGCCGTTGCCATGGCAACAGCAGCGGTGAACGGTGTTAGTGAGCATGGTGGCGGTATGCGCGAGGTTTCCAGTGAGAT                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BX612847             [                                                                                                                                                       AGCGCAGCTTGGCGGACATGACGAGCCACTATGAGGCGCTAAAGCTGGTCGCCGATCGAGCGGTAGAGGACATGAAAAAGCGGGCCAACACTTACATCGCACCGGTGAAAATTACTCGCGCTGTTGGGCTGCAAGTGTCGAGGGGTGGATATGC AGCGGAGACGGGTCACAAGCCGTCCAGCAGTAGTTCCGGAAAACGGAAGGGTGAATCAGCTGCCGTTGCCATGGCAACAGCAGCGGTGAACGGTGTTAGTGAGCATGGTGGCGGTATGCGCGAGGTTTCCAGTGAGATGGCGAAAAGACCCGGCCAGCAGGCAGTGATCGGTGGTGTGCAGCGTGTCACAGTGCAGCGGCATCATGTACCGAATAATGCACCGCAGATGATAACAACTCGCACGAGCCCAAACAATTCCACTACGGCGAACGGGGTGGCACGATCATTCAAACCTTATGTTGCGAAGCTTAGCAATACCGTGACAACGGTTGCCACGTTCACGCCACCGGTCACACCGAACAGACTGTCGATCAATGCCGGCGATGGTTCAAACGCAGTACCGGCGCTCAACAATACTCCACCACCCCTTGCCATTACCGCGACAAGCAGTGACTCCGGAACTAATAGCGTTTCGCCTGGAGTTGATAGTCCTGTGCGCAAAAAGCAACTGCAGAAAATTACTCCCATGCGGCCTCCACTGTCAGCGT]


>consensus_4370#0 CTNGCACGAGGAAACCGTTCACGGGAATGACGCGCTCCGATTTGGAGCAACTGGTGCTGC AGAAGATCAGCGAAGCGCTGGTGTACAAATCGGATAATGCCGCATTGCGAGCGATTATCA AGAAGCAGGCTGTAAAGCTGCAAGGNTTGNGAGCGCAGCTTGGCGGACATGACGAGCCAC TATGAGGCGCTAAAGCTGGTCGCCGATCGAGCGGTAGAGGACATGAAAAAGCGGGCCAAC ACTTACATCGCACCGGTGAAAATTACTCGCGCTGTTGGGCTGCAAGTGTCGAGGGGTGGA TATGCAAGCGGAGACGGGTCACAAGCCGTCCAGCAGTAGTTCCGGAAAACGGAAGGGTGA ATCAGCTGCCGTTGCCATGGCAACAGCAGCGGTGAACGGTGTTAGTGAGCATGGTGGCGG TATGCGCGAGGTTTCCAGTGAGATGGCGAAAAGACCCGGCCAGCAGGCAGTGATCGGTGG TGTGCAGCGTGTCACAGTGCAGCGGCATCATGTACCGAATAATGCACCGCAGATGATAAC AACTCGCACGAGCCCAAACAATTCCACTACGGCGAACGGGGTGGCACGATCATTCAAACC TTATGTTGCGAAGCTTAGCAATACCGTGACAACGGTTGCCACGTTCACGCCACCGGTCAC ACCGAACAGACTGTCGATCAATGCCGGCGATGGTTCAAACGCAGTACCGGCGCTCAACAA TACTCCACCACCCCTTGCCATTACCGCGACAAGCAGTGACTCCGGAACTAATAGCGTTTC GCCTGGAGTTGATAGTCCTGTGCGCAAAAAGCAACTGCAGAAAATTACTCCCATGCGGCC TCCACTGTCAGCGT



consensusID : consensus_4370#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 652
fasta sequence
                              [CCGCCCACGCGTCCGCGAGGGGTGGATATGCAGCGGAGACGGGTCACAAGCCGTCCAGCAGTAGTTCCGGAAAACGGAAGGGTGAATCAGCTGCCGTTGCCATGGCAACAGCAGCGGTGAACGGTGTTAGTGAGCATGGTGGCGGTATGCGCGAGGTTTCCAGTGAGATGGCGAAAAGACCCGGCCAGCAGGCAGTGATCGGTGGTGTGCAGCGTGTCACAGTGCAGCGGCATCATGTACCGAATAATGCACCGCAGATGATAACAACTCGCACGAGCCCAAACAATTCCACTACGGCGAACGGGGTGGCACGATCATTCAAACCTTATGTTGCGAAGCTTAGCAATACCGTGACAACGGTTGCCACGTTCACGCCACCGGTCACACCGAACAGACTGTCGATCAATGCCGGCGATGGTTCAAACGCAGTACCGGCGCTCAACAATACTCCACCACCCCTTGCCATTACCGCGACAAGCAGTGACTCCGGAACTAATAGCGTTTCGCCTGGAGTTGATAGTCCTGTGCGCAAAAAGCAACTGCAGAAAATTACTCCCATGCGGCCTCCACTGTCAGCGTACCAGCAGGCGCAGCAAGAGAAACAAGCACGGCAGCAACAGGAGCTTCTGCTGCAACAAATACACGAGCAGAG]

[+] EMBL BM594710             [CCGCCCACGCGTCCGCGAGGGGTGGATATGCAGCGGAGACGGGTCACAAGCCGTCCAGCAGTAGTTCCGGAAAACGGAAGGGTGAATCAGCTGCCGTTGCCATGGCAACAGCAGCGGTGAACGGTGTTAGTGAGCATGGTGGCGGTATGCGCGAGGTTTCCAGTGAGATGGCGAAAAGACCCGGCCAGCAGGCAGTGATCGGTGGTGTGCAGCGTGTCACAGTGCAGCGGCATCATGTACCGAATAATGCACCGCAGATGATAACAACTCGCACGAGCCCAAACAATTCCACTACGGCGAACGGGGTGGCACGATCATTCAAACCTTATGTTGCGAAGCTTAGCAATACCGTGACAACGGTTGCCACGTTCACGCCACCGGTCACACCGAACAGACTGTCGATCAATGCCGGCGATGGTTCAAACGCAGTACCGGCGCTCAACAATACTCCACCACCCCTTGCCATTACCGCGACAAGCAGTGACTCCGGAACTAATAGCGTTTCGCCTGGAGTTGATAGTCCTGTGCGCAAAAAGCAACTGCAGAAAATTACTCCCATGCGGCCTCCACTGTCAGCGTACCAGCAGGCGCAGCAAGAGAAACAAGCACGGCAGCAACAGGAGCTTCTGCTGCAACAAATACACGAGCAGAG]


>consensus_4370#1 CCGCCCACGCGTCCGCGAGGGGTGGATATGCAGCGGAGACGGGTCACAAGCCGTCCAGCA GTAGTTCCGGAAAACGGAAGGGTGAATCAGCTGCCGTTGCCATGGCAACAGCAGCGGTGA ACGGTGTTAGTGAGCATGGTGGCGGTATGCGCGAGGTTTCCAGTGAGATGGCGAAAAGAC CCGGCCAGCAGGCAGTGATCGGTGGTGTGCAGCGTGTCACAGTGCAGCGGCATCATGTAC CGAATAATGCACCGCAGATGATAACAACTCGCACGAGCCCAAACAATTCCACTACGGCGA ACGGGGTGGCACGATCATTCAAACCTTATGTTGCGAAGCTTAGCAATACCGTGACAACGG TTGCCACGTTCACGCCACCGGTCACACCGAACAGACTGTCGATCAATGCCGGCGATGGTT CAAACGCAGTACCGGCGCTCAACAATACTCCACCACCCCTTGCCATTACCGCGACAAGCA GTGACTCCGGAACTAATAGCGTTTCGCCTGGAGTTGATAGTCCTGTGCGCAAAAAGCAAC TGCAGAAAATTACTCCCATGCGGCCTCCACTGTCAGCGTACCAGCAGGCGCAGCAAGAGA AACAAGCACGGCAGCAACAGGAGCTTCTGCTGCAACAAATACACGAGCAGAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4370#0      CTNGCACGAGGAAACCGTTCACGGGAATGACGCGCTCCGATTTGGAGCAACTGGTGCTGC 60
consensus_4370#1      ------------------------------------------------------------
                                                                                  

consensus_4370#0      AGAAGATCAGCGAAGCGCTGGTGTACAAATCGGATAATGCCGCATTGCGAGCGATTATCA 120
consensus_4370#1      ------------------------------------------------------------
                                                                                  

consensus_4370#0      AGAAGCAGGCTGTAAAGCTGCAAGGNTTGNGAGCGCAGCTTGGCGGACATGACGAGCCAC 180
consensus_4370#1      ------------------------------------------------------------
                                                                                  

consensus_4370#0      TATGAGGCGCTAAAGCTGGTCGCCGATCGAGCGGTAGAGGACATGAAAAAGCGGGCCAAC 240
consensus_4370#1      ------------------------------------------------------------
                                                                                  

consensus_4370#0      ACTTACATCGCACCGGTGAAAATTACTCGCGCTGTTGGGCTGCAAGTGT-CGAGGGGTGG 299
consensus_4370#1      -----------------------------------CCGCCCACGCGTCCGCGAGGGGTGG 25
                                                           * *  *  **   **********

consensus_4370#0      ATATGCAAGCGGAGACGGGTCACAAGCCGTCCAGCAGTAGTTCCGGAAAACGGAAGGGTG 359
consensus_4370#1      ATATGCA-GCGGAGACGGGTCACAAGCCGTCCAGCAGTAGTTCCGGAAAACGGAAGGGTG 84
                      ******* ****************************************************

consensus_4370#0      AATCAGCTGCCGTTGCCATGGCAACAGCAGCGGTGAACGGTGTTAGTGAGCATGGTGGCG 419
consensus_4370#1      AATCAGCTGCCGTTGCCATGGCAACAGCAGCGGTGAACGGTGTTAGTGAGCATGGTGGCG 144
                      ************************************************************

consensus_4370#0      GTATGCGCGAGGTTTCCAGTGAGATGGCGAAAAGACCCGGCCAGCAGGCAGTGATCGGTG 479
consensus_4370#1      GTATGCGCGAGGTTTCCAGTGAGATGGCGAAAAGACCCGGCCAGCAGGCAGTGATCGGTG 204
                      ************************************************************

consensus_4370#0      GTGTGCAGCGTGTCACAGTGCAGCGGCATCATGTACCGAATAATGCACCGCAGATGATAA 539
consensus_4370#1      GTGTGCAGCGTGTCACAGTGCAGCGGCATCATGTACCGAATAATGCACCGCAGATGATAA 264
                      ************************************************************

consensus_4370#0      CAACTCGCACGAGCCCAAACAATTCCACTACGGCGAACGGGGTGGCACGATCATTCAAAC 599
consensus_4370#1      CAACTCGCACGAGCCCAAACAATTCCACTACGGCGAACGGGGTGGCACGATCATTCAAAC 324
                      ************************************************************

consensus_4370#0      CTTATGTTGCGAAGCTTAGCAATACCGTGACAACGGTTGCCACGTTCACGCCACCGGTCA 659
consensus_4370#1      CTTATGTTGCGAAGCTTAGCAATACCGTGACAACGGTTGCCACGTTCACGCCACCGGTCA 384
                      ************************************************************

consensus_4370#0      CACCGAACAGACTGTCGATCAATGCCGGCGATGGTTCAAACGCAGTACCGGCGCTCAACA 719
consensus_4370#1      CACCGAACAGACTGTCGATCAATGCCGGCGATGGTTCAAACGCAGTACCGGCGCTCAACA 444
                      ************************************************************

consensus_4370#0      ATACTCCACCACCCCTTGCCATTACCGCGACAAGCAGTGACTCCGGAACTAATAGCGTTT 779
consensus_4370#1      ATACTCCACCACCCCTTGCCATTACCGCGACAAGCAGTGACTCCGGAACTAATAGCGTTT 504
                      ************************************************************

consensus_4370#0      CGCCTGGAGTTGATAGTCCTGTGCGCAAAAAGCAACTGCAGAAAATTACTCCCATGCGGC 839
consensus_4370#1      CGCCTGGAGTTGATAGTCCTGTGCGCAAAAAGCAACTGCAGAAAATTACTCCCATGCGGC 564
                      ************************************************************

consensus_4370#0      CTCCACTGTCAGCGT--------------------------------------------- 854
consensus_4370#1      CTCCACTGTCAGCGTACCAGCAGGCGCAGCAAGAGAAACAAGCACGGCAGCAACAGGAGC 624
                      ***************                                             

consensus_4370#0      ----------------------------
consensus_4370#1      TTCTGCTGCAACAAATACACGAGCAGAG 652
                                                  




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)