These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4372#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 938 fasta sequence [CCGCCCACGCGTCCGCATAGTACAAACTCCTCACTGAACAGCTCGACAATACGTACAGTTTCAAGCATGGGACGTCTTCAGTATTCCTTCGCTGCTTTACTATCCGTGCTTACGATCGCCTCGATCACTGGCACTTCCCTGGCCCAAGATGATCAGGGACCGGTGGTAGACATCCAAGGACTTGGATCAGTCTTGGGAACCATGGGAGAGACGGCCTGGACTGGACGACCCATCTACCAGTTCTTCAACATCAAGTACGCCGAGGCTCCAGTAGGAGAACAACGCTTCCGTGCTCCTCTCAGTGTACTTCCCTGGTCTGGTGTCATGAATGTCACCGCTCCTGGTCGTGGTTGTCCTCAGCGACGCACTATTTCTCAGGATGACCCTGATGCCGAGGATTGCCTCACGCTTTCCGTATACTCCAACGATCTTACGGCCAATCGTCCCGTCATGCTCTACGTCCACGGAGGTGCTTTTGTAGTCGGATCCGCGGAGCGATTCGGACCTGAGTATTTGCTCGAGAAGGACATCGTCCTCGTCGTCATACAGTATCGCTTGGGTACGCTTGGATTTCTCTCTACTGGTACCGAGGCTATCCCTGGTAACGCTGCCATGTACGACGTGCTCGAGTCGCTTGAATGGGTATCCCGACACATTCGTAGCTTCGGTGGAAACCCACTAGAAGTAACGATCTTCGGTGAGTCTGCCGGAGGACATGCAGTTTCCGCTATGCTCCATAGCCCCCGTGTTCGCGAGGGACTCTTCAAACGCGCCATCATCCAGTCCGGTACCTTGTTCATGCCCTGGGTCATCTGTCAGGATCCTACCGAGGGTGCATACGAGATCGCTCGTATTATCGGTTGTCCCATGACGACTCCTGCCGACATCGATAGCTGCCTTAAGGGCGCTTCAGTGCGGGATCTGGTTCAGGCTCAAGA] [+] EMBL BM596926 [CCGCCCACGCGTCCGCATAGTACAAACTCCTCACTGAACAGCTCGACAATACGTACAGTTTCAAGCATGGGACGTCTTCAGTATTCCTTCGCTGCTTTACTATCCGTGCTTACGATCGCCTCGATCACTGGCACTTCCCTGGCCCAAGATGATCAGGGACCGGTGGTAGACATCCAAGGACTTGGATCAGTCTTGGGAACCATGGGAGAGACGGCCTGGACTGGACGACCCATCTACCAGTTCTTCAACATCAAGTACGCCGAGGCTCCAGTAGGAGAACAACGCTTCCGTGCTCCTCTCAGTGTACTTCCCTGGTCTGGTGTCATGAATGTCACCGCTCCTGGTCGTGGTTGTCCTCAGCGACGCACTATTTCTCAGGATGACCCTGATGCCGAGGATTGCCTCACGCTTTCCGTATACTCCAACGATCTTACGGCCAATCGTCCCGTCATGCTCTACGTCCACGGAGGTGCTTTTGTAGTCGGATCCGCGGAGCGATTCGGACCTGAGTATTTGCTCGAGAAGGACATCGTCCTCGTCGTCATACAGTATCGCTTGGGTACGCTTGGATTTCTCTCTACTGGTACCGAGGCTATCCCTGGTAACGCTGCCATGTACGACGTGCTCGAGTC ] [+] EMBL BX623925 [ GTATGCCGAGGCTCCGGTAGGAGAACAACGCTTCCGTGCTCCTATCAGTGTACTTCCCTGGACGGGTGTCATGAATGTCACCGCTCCTGGTCGTGGCTGTCCTCAGTCTCGCACAATTTCGCAAGATGACCCTGATGCCGAGGATTGTCTCACGCTTTCCGTATACTCCAACGATCTTACGGCCAATCGTCCCGTCATGCTCTACGTCCACGGAGGTGCATTCGTGGTTGGATCCGCGGAGCGATTCGGACCTGAGTATTTGCTCGAGAAGGACATCGTCCTCGTCGTCATACAGTATCGCTTGGGTACGCTAGGATTTCTCTCTACCGGCACCGAAGCTATCCCTGGTAACGCTGCAATGTACGATGTGCTCGAGTCGCTTGAATGGGTATCCCGACACATTCGTAGCTTCGGTGGAAACCCACTAGAAGTAACGATCTTCGGTGAGTCTGCCGGAGGACATGCAGTTTCCGCTATGCTCCATAGCCCCCGTGTTCGCGAGGGACTCTTCAAACGCGCCATCATCCAGTCCGGTACCTTGTTCATGCCCTGGGTCATCTGTCAGGATCCTACCGAGGGTGCATACGAGATCGCTCGTATTATCGGTTGTCCCATGACGACTCCTGCCGACATCGATAGCTGCCTTAAGGGCGCTTCAGTGCGGGATCTGGTTCAGGCTCAAGA] consensusID : consensus_4372#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 758 fasta sequence [CAGATCGCCCGAGTTTAACATCCAGTGGTGTAGGTTCTGTCATGGGAACCATGGGAAAGACGGCCTGNACTGGACGACCCATCTACCAGTTCTTCAACATCAAGTATGCCGAGGCTCCGGTAGTGAGAACAACGCTTCCGTGCTCCTATCAGTGTACTTCCCTGGACGGGTGTCATGAACTGTCACCGGTCCTGGTCGCTGGCTGTCCTCAGGTCTCGCACAATTTCGCAAGATGACCCTGAATGGCCCGGAGAGGATTTTGGTCGTCACCTGGCCTTTACACCGGTAATTACGTATCCAAACGGGAATACTATAACGNGGCGCAAAATCCGGTACCCCGGTCATGGCTACTACGGTACCAACTGGTGTNATNATGGTTNGGGCGCCATTTACCCGCTTGTGGNNGTCATATGCTGGGAATTTCCCCTGNGCGGCGGGAAGTACTCTGGGACTATCCTGAGGGNAANCGTTGGGGAAGGGTTAATTNTTCTNTGGGCCGTTACCTGCGAATNGGAAAANGGTGGGTGGAAGACCCAACTTGTTACCTAGAGGTGTACCCTCCCTTTTATCCACGGCGTTTGTATCCCGGGTTCCTCCTAGTTTATGAAATGCGCACTAGGGGTGTGTCAATTATTACCNNGGGCGACAGCTCACATTATGGGTGNGGAGAGGTTGTATAAAAACCGCTGCCGCCCTTTTAAAAGGNGTGGGNGAAACTTAATTTANTNGTCGACCGTTGTACCGNTATAGCGCTTTAT] [+] EMBL AL932099 [CAGATCGCCCGAGTTTAACATCCAGTGGTGTAGGTTCTGTCATGGGAACCATGGGAAAGACGGCCTGNACTGGACGACCCATCTACCAGTTCTTCAACATCAAGTATGCCGAGGCTCCGGTAGTGAGAACAACGCTTCCGTGCTCCTATCAGTGTACTTCCCTGGACGGGTGTCATGAACTGTCACCGGTCCTGGTCGCTGGCTGTCCTCAGGTCTCGCACAATTTCGCAAGATGACCCTGAATGGCCCGGAGAGGATTTTGGTCGTCACCTGGCCTTTACACCGGTAATTACGTATCCAAACGGGAATACTATAACGNGGCGCAAAATCCGGTACCCCGGTCATGGCTACTACGGTACCAACTGGTGTNATNATGGTTNGGGCGCCATTTACCCGCTTGTGGNNGTCATATGCTGGGAATTTCCCCTGNGCGGCGGGAAGTACTCTGGGACTATCCTGAGGGNAANCGTTGGGGAAGGGTTAATTNTTCTNTGGGCCGTTACCTGCGAATNGGAAAANGGTGGGTGGAAGACCCAACTTGTTACCTAGAGGTGTACCCTCCCTTTTATCCACGGCGTTTGTATCCCGGGTTCCTCCTAGTTTATGAAATGCGCACTAGGGGTGTGTCAATTATTACCNNGGGCGACAGCTCACATTATGGGTGNGGAGAGGTTGTATAAAAACCGCTGCCGCCCTTTTAAAAGGNGTGGGNGAAACTTAATTTANTNGTCGACCGTTGTACCGNTATAGCGCTTTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4372#0 CCGCCCACGCGTCCGCATAGTACAAACTCCTCACTGAACAGCTCGACAATACGTACAGTT 60 consensus_4372#1 ------------------------------------------------------------ consensus_4372#0 TCAAGCATGGGACGTCTTCAGTATTCCTTCGCTGCTTTACTATCCGTGCTTACGATCGCC 120 consensus_4372#1 ------------------------------------------------------------ consensus_4372#0 TCGATCACTGGCACTTCCCTGGCCCAAGATGATCAGGG-ACCGGTGGTAGACATCCAAGG 179 consensus_4372#1 ---------------------------------CAGATCGCCCGAGTTTAACATCCAGTG 27 *** ** * * * ******* * consensus_4372#0 ACTTGGAT-CAGTCTTGGGAACCATGGGAGAGACGGCCTGGACTGGACGACCCATCTACC 238 consensus_4372#1 GTGTAGGTTCTGTCATGGGAACCATGGGAAAGACGGCCTGNACTGGACGACCCATCTACC 87 * * * * *** ************** ********** ******************* consensus_4372#0 AGTTCTTCAACATCAAGTACGCCGAGGCTCCAGTAG-GAGAACAACGCTTCCGTGCTCCT 297 consensus_4372#1 AGTTCTTCAACATCAAGTATGCCGAGGCTCCGGTAGTGAGAACAACGCTTCCGTGCTCCT 147 ******************* *********** **** *********************** consensus_4372#0 CTCAGTGTACTTCCCTGGTCTGGTGTCATGAA-TGTCACCGCTCCTGGTCG-TGGTTGTC 355 consensus_4372#1 ATCAGTGTACTTCCCTGGACGGGTGTCATGAACTGTCACCGGTCCTGGTCGCTGGCTGTC 207 ***************** * *********** ******** ********* *** **** consensus_4372#0 CTCAG-CGACGCACTATTTCTCAGGATGACCCTGA------TGCCGAGGATT--GCCTCA 406 consensus_4372#1 CTCAGGTCTCGCACAATTTCGCAAGATGACCCTGAATGGCCCGGAGAGGATTTTGGTCGT 267 ***** ***** ***** ** *********** * ******* * consensus_4372#0 CGCTTTCCGTATACTCCAACGATCTTACGGCCAATCGTCCCGTCATGCTCTACGTCCACG 466 consensus_4372#1 CACCTGGCCTTTACACCGGTAATTACGTATCCAAACG----GGAATACTATAACGNGGCG 323 * * * * * *** ** ** **** ** * ** ** ** ** consensus_4372#0 GAGGTGCTTTTGTAGTCGGATCCGCGGAGCGATTCGGACCTGAGTATTTGCTCGAGAAGG 526 consensus_4372#1 CAAA--ATCCGGTACCCCGGT---CATGGCTACTACGGTACCA--ACTGGTGTNATNATG 376 * * *** * * * * ** * * * * * * * * * * consensus_4372#0 ACATCGTCCTCGTCGTCATACAGTATCGCTTGGGTACGCTTGGATTTCTCTCTACTGGTA 586 consensus_4372#1 GTTNGGGCGCCATTTACCCGCT-TGTGGNNGTCATATGCTGGGAATTTCCCCTG--NGCG 433 * * * * * * * * * ** *** *** ** * ** * consensus_4372#0 CCGAGGCTATCCCTGGTAACGCTGCCATGTACGACGTGCTCGAGTCGCTTGAATGGGTAT 646 consensus_4372#1 GCGGGAAGTACTCTGGGACTATCCTGAGGGNAANCGT--TGGGGAAGGGTTAATTNTTCT 491 ** * * **** * * * *** * * * * * *** * * consensus_4372#0 CCCGACACATTCGTAGCTTCGGTGGAAACCCACTAGAAGTAACGATCTTCGGTGAGTCTG 706 consensus_4372#1 NTGGGC-CGTTACCTGC--GAATNGGAAAANGGTGGGTGGAA-GACC--CAACTTGTTAC 545 * * * ** ** * * ** * * * ** ** * * ** consensus_4372#0 CCGGAGGACATGCAGTTTCCGCTATGCTCCATAGCCCCCGTGTTCGCGAGGGACTCTTCA 766 consensus_4372#1 CTAGAGG---TGTACCCTCCCTTTTA-TCCACGGCGTTTGTATCC-CGGGTTCCTCCTAG 600 * **** ** * *** * * **** ** ** * * ** * *** * consensus_4372#0 AACGCGCCATCATCCAGTCCGGTACCTTGTTCATGCCCTGGGTCATCTGTCAGGATCCTA 826 consensus_4372#1 TTTATGAAATGCGCACTAGGGGTGTGTCAATTATTACCNNGGGCGAC-----AGCTCACA 655 * ** * *** * * ** ** ** * * * ** * consensus_4372#0 CCGAGGGTGCATACGAGATCGCTCGTATTATCGGTTGTCCCATGACGACTCCTGCCGACA 886 consensus_4372#1 TTATGGGTGNGGAGAGGTTGTATAAAAACCGCTGCCGCCCTTTTAAAAGGNGTGGGNGAA 715 ***** * * * * * * * * ** * * * ** * consensus_4372#0 TCGATAGCTGCCTTAAGGGCGCTTCAGTGCGGGATCTGGTTCAGGCTCAAGA 938 consensus_4372#1 ACTTAATTTANTNGTCGACCGTTGTACCGNTATAGC-GCTTTAT-------- 758 * * * * ** * * * * * * ** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||