These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4379#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1088 fasta sequence [CCGGTTTGTGTGTGTGAGAGAGTGTTTGTGCGTTAGTGAAGGTATCGCCAGACAAGCCGCCACTTCCGGAAGCACTTGCATTGCTGTTTCCTTTGCTTTTCCCGCACCCATTGTTGTTGTGTCGCTGTTGTGTGCGTGTGTATGTGTGTGGTCTGTACGTTTGATGAAGCATGTGCTCTGTCACGCTGTCACAGAAAGGAATGCCACAGAAAGGATACTACCACCAGAGATCGGCCTCGGTGTCGTCGGGTTCATCGAGCTTAGCAACCATTGGAGTAGGTAGCGCTGCTGCTGCTGGTAGTGTGGCAGTAGGAGGTGTAGCTGGTGGAGGAATAGTAGGTGGAAGTGGAGGATCAACGGTAACAGCAACAGCAGCAGCAGTAGGCAATTCCAACATGGTTTCGTTCATGCAGTCGCGAGGATACGGATCTCAAAGTGGGAATAGCATCAACAACTACCACGGTGTGTTCGACGGCAGTGCGGCGGAAACTGGCACCCCGCCCCTGCTCGATCTCTCCGAATTTCCCTCGCTCACGAACGCACGCGGTGGCCAGAACGATCAATCCCTGCCGCAGTCGAACGCGCTGCAACCGCCGGGCAGTAAACCGTACGTTGGCATGGTAAAACAACCGACGTCCGAACAGATTGCGTTTACGATGTCGAACGAAGACTTTCCAGCGCTGCCCGGCACGCAGAACGCCGAAGGAAGCCAGATGGGTGCGGCCAGCCAGGGCCTGCAGGGCGNTGCACCACCATCACCATCCGGACCATCACGGCGGCACGGACAGTTTGGGGGGCAAGGGTGCCGGCGGCAGCGGACAGGTGGGCNGTGCGGCAGGCATGGGCATGGACCTGCAGAGTGATTCCGGCAATTCCAACGTTAACATGGACAAAGGAGCAATGAAGCGAGGCGTACAAACATCACCCAATGGAACGGTAACGAACATCCCTGCCAGTATGGTGAACAACCAGTTCGGTATGGTGGGCCTGCTAACGTTCCTCCGGGCGGCGGAAACGGATCCCAATCTGGTGACGCTAGCGATGGGGCAGGATTTGATGGCGCTGGGTTTGAATCTGACCGCGGTGGA] [+] EMBL BM582006 [CCGGTTTGTGTGTGTGAGAGAGTGTTTGTGCGTTAGTGAAGGTATCGCCAGACAAGCCGCCACTTCCGGAAGCACTTGCATTGCTGTTTCCTTTGCTTTTCCCGCACCCATTGTTGTTGTGTCGCTGTTGTGTGCGTGTGTATGTGTGTGGTCTGTACGTTTGATGAAGCATGTGCTCTGTCACGCTGTCACAGAAAGGAATGCCACAGAAAGGATACTACCACCAGAGATCGGCCTCGGTGTCGTCGGGTTCATCGAGCTTAGCAACCATTGGAGTAGGTAGCGCTGCTGCTGCTGGTAGTGTGGCAGTAGGAGGTGTAGCTGGTGGAGGAATAGTAGGTGGAAGTGGAGGATCAACGGTAACAGCAACAGCAGCAGCAGTAGGCAATTCCAACATGGTTTCGTTCATGCAGTCGCGAGGATACGGATCTCAAAGTGGGAATAGCATCAACAACTACCACGGTGTGTTCGACGGCAGTGCGGCGGAAACTGGCACCCCGCCCCTGCTCGATCTCTCCGAATTTCCCTCGCTCACGAACGCACGCGGTGGCCAGAACGATCAATCCCTGCCGCAGTCGAACGCGCTGCAACCGCCGGGCAGTAAACCGTACGTTGGCATGGTAAAACAACCGACGTCCGAACAGATTG ] [+] EMBL BX625926 [ AACAGCAACAGCAGCAGNAGTAGGCAATTCCAACATGGTTTCGTTCATGCAGTCGCGAGGATACGGATCTCAAAGTGGGAATAGCATCAACAACTACCACGGTGTGTTCGACGGCAGTGCGGCGGAAACTGGCACCCCGCCCCTGCTCGATCTCTCCGAATTTCCCTCGCTCACGAACGCACGCGGTGGCCAGAACGATCAATCCCTGCCGCAGTCGAACGCGCTGCAACCGCCGGGCAGTAAACCGTACGTTGGCATGGTAAAACAACCGACGTCCGAACAGATTGCGTTTACGATGTCGAACGAAGACTTTCCAGCGCTGCCCGGCACGCAGAACGCCGAAGGAAGCCAGATGGGTGCGGCCAGCCAGGGCCTGCAGGGCGNTGCACCACCATCACCATCCGGACCATCACGGCGGCACGGACAGTTTGGGGGGCAAGGGTGCCGGCGGCAGCGGACAGGTGGGCNGTGCGGCAGGCATGGGCATGGACCTGCAGAGTGATTCCGGCAATTCCAACGTTAACATGGACAAAGGAGCAATGAAGCGAGGCGTACAAACATCACCCAATGGAACGGTAACGAACATCCCTGCCAGTATGGTGAACAACCAGTTCGGTATGGTGGGCCTGCTAACGTTCCTCCGGGCGGCGGAAACGGATCCCAATCTGGTGACGCTAGCGATGGGGCAGGATTTGATGGCGCTGGGTTTGAATCTGACCGCGGTGGA] consensusID : consensus_4379#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 592 fasta sequence [GAATNCCCCGAGTTCAGTTGGCATGTAAACAACCGACGTCGAACAGATTGCGTTTACGATGTCGAACGAAGACTTTCCAGCGCTGCCCGGCACGCAGAACGCCGAAGGAAGCCAGATGGGTGCGGCCAGCCAGNGGCCTGCAGGGCGTGCACCATCATCACCATCCGGACCATCACGGCGGCACGGACAGTTTGGGTGGGCAANGTGTGCCGGCGGCAGCGGACAGGTGGGCAGTGCGGCAGGCATGGTGCATGGACCTGCAGAGTGATTCCTGGCAATTCCAACGTTAACATGGACAAAGGAGCAATGAAGCGAGTGCGTACAAACATCACCCAATGGAACGGTAACGAACATCCCTGCCAGTATGGTTGAACAACCAGTTCGGTATTGGTGGGCCTGCTAACGTTCCTCCGGGCGGCTGGAAACGGATCCCAATCTGGTGACGCTAGCGATGGGGCAGGATTTGATGGCGCTGGGTTTGAATCTGACCGCGGTGGAAAACCTGTACCCGTGCTTTTGGCGGCCCTTCGCTGATGCGCCCGCGAGGCCTCAGGATATCGAGTACCCACGTACCACCAGAGTATTTGATCCA] [+] EMBL AL932307 [GAATNCCCCGAGTTCAGTTGGCATGTAAACAACCGACGTCGAACAGATTGCGTTTACGATGTCGAACGAAGACTTTCCAGCGCTGCCCGGCACGCAGAACGCCGAAGGAAGCCAGATGGGTGCGGCCAGCCAGNGGCCTGCAGGGCGTGCACCATCATCACCATCCGGACCATCACGGCGGCACGGACAGTTTGGGTGGGCAANGTGTGCCGGCGGCAGCGGACAGGTGGGCAGTGCGGCAGGCATGGTGCATGGACCTGCAGAGTGATTCCTGGCAATTCCAACGTTAACATGGACAAAGGAGCAATGAAGCGAGTGCGTACAAACATCACCCAATGGAACGGTAACGAACATCCCTGCCAGTATGGTTGAACAACCAGTTCGGTATTGGTGGGCCTGCTAACGTTCCTCCGGGCGGCTGGAAACGGATCCCAATCTGGTGACGCTAGCGATGGGGCAGGATTTGATGGCGCTGGGTTTGAATCTGACCGCGGTGGAAAACCTGTACCCGTGCTTTTGGCGGCCCTTCGCTGATGCGCCCGCGAGGCCTCAGGATATCGAGTACCCACGTACCACCAGAGTATTTGATCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4379#0 CCGGTTTGTGTGTGTGAGAGAGTGTTTGTGCGTTAGTGAAGGTATCGCCAGACAAGCCGC 60 consensus_4379#1 ------------------------------------------------------------ consensus_4379#0 CACTTCCGGAAGCACTTGCATTGCTGTTTCCTTTGCTTTTCCCGCACCCATTGTTGTTGT 120 consensus_4379#1 ------------------------------------------------------------ consensus_4379#0 GTCGCTGTTGTGTGCGTGTGTATGTGTGTGGTCTGTACGTTTGATGAAGCATGTGCTCTG 180 consensus_4379#1 ------------------------------------------------------------ consensus_4379#0 TCACGCTGTCACAGAAAGGAATGCCACAGAAAGGATACTACCACCAGAGATCGGCCTCGG 240 consensus_4379#1 ------------------------------------------------------------ consensus_4379#0 TGTCGTCGGGTTCATCGAGCTTAGCAACCATTGGAGTAGGTAGCGCTGCTGCTGCTGGTA 300 consensus_4379#1 ------------------------------------------------------------ consensus_4379#0 GTGTGGCAGTAGGAGGTGTAGCTGGTGGAGGAATAGTAGGTGGAAGTGGAGGATCAACGG 360 consensus_4379#1 ------------------------------------------------------------ consensus_4379#0 TAACAGCAACAGCAGCAGCAGTAGGCAATTCCAACATGGTTTCGTTCATGCAGTCGCGAG 420 consensus_4379#1 ------------------------------------------------------------ consensus_4379#0 GATACGGATCTCAAAGTGGGAATAGCATCAACAACTACCACGGTGTGTTCGACGGCAGTG 480 consensus_4379#1 ------------------------------------------------------------ consensus_4379#0 CGGCGGAAACTGGCACCCCGCCCCTGCTCGATCTCTCCGAATTTCCCTCGCTCACGAACG 540 consensus_4379#1 ------------------------------------------------------------ consensus_4379#0 CACGCGGTGGCCAGAACGATCAATCCCTGCCGCAGTCGAACGCGCTGCAACCGCCGGGCA 600 consensus_4379#1 -------------------------------------------------------GAATN 5 * consensus_4379#0 GTAAACCGTACGTTGGCATGGTAAAACAACCGACGTCCGAACAGATTGCGTTTACGATGT 660 consensus_4379#1 CCCCGAGTTCAGTTGGCATG--TAAACAACCGACGTC-GAACAGATTGCGTTTACGATGT 62 * ********* ************** ********************** consensus_4379#0 CGAACGAAGACTTTCCAGCGCTGCCCGGCACGCAGAACGCCGAAGGAAGCCAGATGGGTG 720 consensus_4379#1 CGAACGAAGACTTTCCAGCGCTGCCCGGCACGCAGAACGCCGAAGGAAGCCAGATGGGTG 122 ************************************************************ consensus_4379#0 CGGCCAGCCAGGG-CCTGCAGGGCGNTGCACCACCATCACCATCCGGACCATCACGGCGG 779 consensus_4379#1 CGGCCAGCCAGNGGCCTGCAGGGCGT-GCACCATCATCACCATCCGGACCATCACGGCGG 181 *********** * *********** ****** ************************** consensus_4379#0 CACGGACAGTTTGGG-GGGCAAGG-GTGCCGGCGGCAGCGGACAGGTGGGCNGTGCGGCA 837 consensus_4379#1 CACGGACAGTTTGGGTGGGCAANGTGTGCCGGCGGCAGCGGACAGGTGGGCAGTGCGGCA 241 *************** ****** * ************************** ******** consensus_4379#0 GGCATGG-GCATGGACCTGCAGAGTGATTCC-GGCAATTCCAACGTTAACATGGACAAAG 895 consensus_4379#1 GGCATGGTGCATGGACCTGCAGAGTGATTCCTGGCAATTCCAACGTTAACATGGACAAAG 301 ******* *********************** **************************** consensus_4379#0 GAGCAATGAAGCGAG-GCGTACAAACATCACCCAATGGAACGGTAACGAACATCCCTGCC 954 consensus_4379#1 GAGCAATGAAGCGAGTGCGTACAAACATCACCCAATGGAACGGTAACGAACATCCCTGCC 361 *************** ******************************************** consensus_4379#0 AGTATGGT-GAACAACCAGTTCGGTAT-GGTGGGCCTGCTAACGTTCCTCCGGGCGGC-G 1011 consensus_4379#1 AGTATGGTTGAACAACCAGTTCGGTATTGGTGGGCCTGCTAACGTTCCTCCGGGCGGCTG 421 ******** ****************** ****************************** * consensus_4379#0 GAAACGGATCCCAATCTGGTGACGCTAGCGATGGGGCAGGATTTGATGGCGCTGGGTTTG 1071 consensus_4379#1 GAAACGGATCCCAATCTGGTGACGCTAGCGATGGGGCAGGATTTGATGGCGCTGGGTTTG 481 ************************************************************ consensus_4379#0 AATCTGACCGCGGTGGA------------------------------------------- 1088 consensus_4379#1 AATCTGACCGCGGTGGAAAACCTGTACCCGTGCTTTTGGCGGCCCTTCGCTGATGCGCCC 541 ***************** consensus_4379#0 --------------------------------------------------- consensus_4379#1 GCGAGGCCTCAGGATATCGAGTACCCACGTACCACCAGAGTATTTGATCCA 592 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||