These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4388#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence [TNGGCCCAGAGTTTAGTTTTGGAACACCACTGAGTCAGTGTGCAACAATCTTTACATTAAAGAGCGACGGACAGAGCGAACACAGGATGAATGGTAGTGGAAAAGCTCCCAAACAATCAAACGAAAGTGGGGAACGAATATCACGTATAAGTCACAAGTCGAGAGAAATCAAATAAGCCGCGTTAAACGTTAAACGGACGTATGTTTGCTTCCGTTTTTTATTCTTATTCCCCGTATATATACATATGAATATTTATCTGTACAGACATGTGTTTCTCTTAATGGTATTTCTTTTCTTTTGCAACGATTGACCGGTGTTAAACGGGAGGAAAAGCAATCAGGCGAGTNTCTGTTGTGCCGGCACCGTGTGGCTCCCTTCTGAATCTTCGCAACTTTAGGTCGACTCTAGCCCTTGCGCACGAAACCGAGAAACCCAACTGAGCAAACCAAGGATTGTAGCTTCCCCGTNNTGACATTGGGCCTNTGCCACGCGCTGTACTACGGACTTCTATACCTCTACGCAACACCACCTCCTTTCACATCACCCGATCTCTCCAATAATCCNCTATCAGTAAATTCAACNAAGTTCACACAAAGAAAGCCCCAGACAGATTCCNCCACCCACCCGCCACCCCNTTCACTCACCCGCACCNNCCCCNNACCNC] [+] EMBL AL934601 [TNGGCCCAGAGTTTAGTTTTGGAACACCACTGAGTCAGTGTGCAACAATCTTTACATTAAAGAGCGACGGACAGAGCGAACACAGGATGAATGGTAGTGGAAAAGCTCCCAAACAATCAAACGAAAGTGGGGAACGAATATCACGTATAAGTCACAAGTCGAGAGAAATCAAATAAGCCGCGTTAAACGTTAAACGGACGTATGTTTGCTTCCGTTTTTTATTCTTATTCCCCGTATATATACATATGAATATTTATCTGTACAGACATGTGTTTCTCTTAATGGTATTTCTTTTCTTTTGCAACGATTGACCGGTGTTAAACGGGAGGAAAAGCAATCAGGCGAGTNTCTGTTGTGCCGGCACCGTGTGGCTCCCTTCTGAATCTTCGCAACTTTAGGTCGACTCTAGCCCTTGCGCACGAAACCGAGAAACCCAACTGAGCAAACCAAGGATTGTAGCTTCCCCGTNNTGACATTGGGCCTNTGCCACGCGCTGTACTACGGACTTCTATACCTCTACGCAACACCACCTCCTTTCACATCACCCGATCTCTCCAATAATCCNCTATCAGTAAATTCAACNAAGTTCACACAAAGAAAGCCCCAGACAGATTCCNCCACCCACCCGCCACCCCNTTCACTCACCCGCACCNNCCCCNNACCNC] consensusID : consensus_4388#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 485 fasta sequence [TACTATCAGATCACTATCGGTCAACTTTTGGCAGTTTTTTTCAAAATTTAATTTTACCCTTGCG-AGATCTTTCTATTCGCTGCTTAAGATGCAGATTATATGTGGATAGTTTTAGTTTTAGAACACCACTGAGTCAGGTGCAACAATCTTTACATTAAAGA-GCGACGGACAGAGCGAACACAGG-ATGAATGGTA-GGGAA-AACCTCCCAAACAATCAAACGA--AAGTGAGGA-ACGAATATCACGT-ATAAGTCACAAG-TCGAGAGAAATCAAATAAGCCGCGTTAAACGTTAAACGGACGTATGTTTGCTTCCGTTTTTTTTTTTCTTTTCCCCGTATATATACATATGAATATTTATCTGTACAGACACGTGTTACTCTTAATGGTTTTCCTTTCTTTTGCAACGATTGACCGGTGTTAAACGGGAGGAAAAGCAATAGGCGAGTTTTGTTGTGCCGGCACCGTGTGGCTCCCTTTGAATCTTCGCA] [+] EMBL BX612945 [TACTATCAGATCACTATCGGTCAACTTTTGGCAGTTTTTTTCAAAATTTAATTTTACCCTTGCG AGATCTTTCTATTCGCTGCTTAAGATGCAGATTATATGTGGATAGTTTTAGTTTTAGAACACCACTGAGTCAGGTGCAACAATCTTTACATTAAAGA GCGACGGACAGAGCGAACACAGG ATGAATGGTA GGGAA AACCTCCCAAACAATCAAACGA AAGTGAGGA ACGAATATCACGT ATAAGTCACAAG TCGAGAGAAATCAAATAAGCCGCGTTAAACGTTAAACGGACGTATGTTTGCTTCCGTTTTTTTTTTTCTTTTCCCCGTATATATACATATGAATATTTATCTGTACAGACACGTGTTACTCTTAATGGTTTTCCTTTCTTTTGCAACGATTGACCGGTGTTAAACGGGAGGAAAAGCAATAGGCGAGTTTTGTTGTGCCGGCACCGTGTGGCTCCCTTTGAATCTTCGCA] [+] EMBL AL931853 [TACTATCAGATCACTATCGGTCAACTTTTGGCAGTTTTTTTCAAAATTTAATTTTACCCTTGCGCAGATCTTTCTATTCGCTGCTTAAGATGCAGATTATATGTGGATAGTTTTAGTTTTAGAACACCACTGAGTCAGGTGCAACAATCTTTACATTAAAGACGCGACGGACAGAGCGAACACAGGCATGAATGGTACGGGAANAACCTCCCAAACAATCAAACGANCACGTGAGGANACGAATATCACGTCATAAGTCACAAGCTCGAGAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4388#0 ------------------------------------------------------------ consensus_4388#1 TACTATCAGATCACTATCGGTCAACTTTTGGCAGTTTTTTTCAAAATTTAATTTTACCCT 60 consensus_4388#0 --------------------------------------TNGGCCCAGAGTTT-AGTTTTG 21 consensus_4388#1 TGCGAGATCTTTCTATTCGCTGCTTAAGATGCAGATTATATGTGGATAGTTTTAGTTTTA 120 * * * ***** ****** consensus_4388#0 GAACACCACTGAGTCAGTGTGCAACAATCTTTACATTAAAGAGCGACGGACAGAGCGAAC 81 consensus_4388#1 GAACACCACTGAGTCAG-GTGCAACAATCTTTACATTAAAGAGCGACGGACAGAGCGAAC 179 ***************** ****************************************** consensus_4388#0 ACAGGATGAATGGTAGTGGAAAAGCTCCCAAACAATCAAACGAAAGTGGGGAACGAATAT 141 consensus_4388#1 ACAGGATGAATGGTAG-GGAAAACCTCCCAAACAATCAAACGAAAGTGAGGAACGAATAT 238 **************** ****** ************************ *********** consensus_4388#0 CACGTATAAGTCACAAGTCGAGAGAAATCAAATAAGCCGCGTTAAACGTTAAACGGACGT 201 consensus_4388#1 CACGTATAAGTCACAAGTCGAGAGAAATCAAATAAGCCGCGTTAAACGTTAAACGGACGT 298 ************************************************************ consensus_4388#0 ATGTTTGCTTCCGTTTTTTATTCT-TATTCCCCGTATATATACATATGAATATTTATCTG 260 consensus_4388#1 ATGTTTGCTTCCGTTTTTTTTTTTCTTTTCCCCGTATATATACATATGAATATTTATCTG 358 ******************* ** * * ********************************* consensus_4388#0 TACAGACATGTGTTTCTCTTAATGGTATTTCTTTTCTTTTGCAACGATTGACCGGTGTTA 320 consensus_4388#1 TACAGACACGTGTTACTCTTAATGGT-TTTCCTTTCTTTTGCAACGATTGACCGGTGTTA 417 ******** ***** *********** **** **************************** consensus_4388#0 AACGGGAGGAAAAGCAATCAGGCGAGTNTCTGTTGTGCCGGCACCGTGTGGCTCCCTTCT 380 consensus_4388#1 AACGGGAGGAAAAGCAAT-AGGCGAGTTT-TGTTGTGCCGGCACCGTGTGGCTCCCTT-T 474 ****************** ******** * **************************** * consensus_4388#0 GAATCTTCGCAACTTTAGGTCGACTCTAGCCCTTGCGCACGAAACCGAGAAACCCAACTG 440 consensus_4388#1 GAATCTTCGCA------------------------------------------------- 485 *********** consensus_4388#0 AGCAAACCAAGGATTGTAGCTTCCCCGTNNTGACATTGGGCCTNTGCCACGCGCTGTACT 500 consensus_4388#1 ------------------------------------------------------------ consensus_4388#0 ACGGACTTCTATACCTCTACGCAACACCACCTCCTTTCACATCACCCGATCTCTCCAATA 560 consensus_4388#1 ------------------------------------------------------------ consensus_4388#0 ATCCNCTATCAGTAAATTCAACNAAGTTCACACAAAGAAAGCCCCAGACAGATTCCNCCA 620 consensus_4388#1 ------------------------------------------------------------ consensus_4388#0 CCCACCCGCCACCCCNTTCACTCACCCGCACCNNCCCCNNACCNC 665 consensus_4388#1 --------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||