These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4400#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 957 fasta sequence [ACCGTGTGGTTGACCGAAATCCCACACACACATACACGACATCGGACAATACGGTTCGTACAGGAAATTCTTGAGCCCGTTTGTTTTTTGAAACAACCATTCACTTTCTTACCGATAATGGTGTAGCATACGTACGATAGGAATATGAATTTTGTATAGCAAGTTACTCCTTTAATCCGTATCACCACTACTCTACAAATGTGATCGATCGGAGCTATTGCAATTTCTTCACGTGTTTAGTCAGAACGGACGCAGTTTTTTTCTCTATCTAATTGTGATAAGTGAAAGTAGTTTAGACTCGGTTGTTCAAACTGTGTTTCGCCCGTTTCGTGCGTAGTAATAATGATCTTGATTCGATGATATTAACACAAAACAGGTGACCGAACGAAGGCAAACTAGAGAATGGAAAAGGGATGGTTTGAAGTTTGAAGGTGAGGTTGTGTGTAAAGATGAGATTGTGGAGCAGTCAGAAGGCAGATGAGTATGTAGCAATTATGTGATATGTGAAAAGCGATGCATGCGAATGGGGGGAGGATAGAGATCGGAAAAGGCAATCGGAGTGAGAGAGATGGCAGAAATAGGAAACATTTTTCATAAAGCGAATGTTAGTTTTTTAGCATTGCAACATTGCATTCAATTTTATGTATAGAGATGAACGAACGTAGCTTTTTGGGACGTTTTGTGCGGACTCTTTCGAACGCAGTTAGCTTAGCGTACACATCGAACGTACTCGAAGTAGATGGTACTGCTGTGAAAAGGCACTCGATGGCGTACCGTATCGATAGCGAATTTCATTTCCCGTTACTGACTCGTTCAACTATTTTACATGCGATGCGCAATACTGGTGGACGGCGGGAAGGAGCAGCATCCTCAAATCCGATATCATCATATCTCGTAGAATAAGCATAAATATCGTTTGATTTCACTGATAGTATAAACAATTATTTCAATGTCTCT] [+] EMBL BX608463 [ACCGTGTGGTTGACCGAAATCCCACACACACATACACGACATCGGACAATACGGTTCGTACAGGAAATTCTTGAGCCCGTTTGTTTTTTGAAACAACCATTCACTTTCTTACCGATAATGGTGTAGCATACGTACGATAGGAATATGAATTTTGTATAGCAAGTTACTCCTTTAATCCGTATCACCACTACTCTACAAATGTGATCGATCGGAGCTATTGCAATTTCTTCACGTGTTTAGTCAGAACGGACGCAGTTTTTTTCTCTATCTAATTGTGATAAGTGAAAGTAGTTTAGACTCGGTTGTTCAAACTGTGTTTCGCCCGTTTCGTGCGTAGTAATAATGATCTTGATTCGATGATATTAACACAAAACAGGTGACCGAACGAAGGCAAACTAGAGAATGGAAAAGGGATGGTTTGAAGTTTGAAGGTGAGGTTGTGTGTAAAGATGAGATTGTGGAGCAGTCAGAAGGCAGATGAGTATGTAGCAATTATGTGATATGTGAAAAGCGATGCATGCGAATGGGGGGAGGATAGAGATCGGAAAAGGCAATCGGAGTGAGAGAGATGGCAGAAATAGGAAACATTTTTCATAAAGCGAATGTTAGTTTTTTAGCATTGCAACATTGCATTCAATTTTATGTATAGAGATGAACGAACGTAGCTTTTTGGGACGTTTTGTGCGGACTCTTTCGAACGCAGTTAGCTTAGCGTACACATCGAACGTACTCGAAGTAGATGGTACTGCTGTGAAAAGGCACTCGATGGC ] [+] EMBL BX628935 [ GATGGTTTGAAGTTTGAAGGTGAGGTTGTGTGTAAAGATGAGATTGTGGAGCAGTCAGAAGGCAGATGAGTATGTAGCAATTATGTGATATGTGAAAAGCGATGCATGCGAATGGGGGGAGGATAGAGATCGGAAAAGGCAATCGGAGTGAGAGAGATGGCAGAAATAGGAAACATTTTTCATAAAGCGAATGTTAGTTTTTTAGCATTGCAACATTGCATTCAATTTTATGTATAGAGATGAACGAACGTAGCTTTTTGGGACGTTTTGTGCGGACTCTTTCGAACGCAGTTAGCTTAGCGTACACATCGAACGTACTCGAAGTAGATGGTACTGCTGTGAAAAGGCACTCGATGGCGTACCGTATCGATAGCGAATTTCATTTCCCGTTACTGACTCGTTCAACTATTTTACATGCGATGCGCAATACTGGTGGACGGCGGGAAGGAGCAGCATCCTCAAATCCGATATCATCATATCTCGTAGAATAAGCATAAATATCGTTTGATTTCACTGATAGTATAAACAATTATTTCAATGTCTCT] consensusID : consensus_4400#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence [GCAAGAATCGCCGAGGTTAATGTCAACTGTTTCGCCCGTTCGTGCGTAGTATATGATCTTGATTCGATGATATTAACACAAAACAGGTGACCGAACGAAGTGCAACTAAAGAATGGAAAGGGATGGTTTGAAGTTTGAAGGTGAGGTTGTGTGTAAAGATGAGATTTGTTGGAGCAGTCAGAAGTGCAGATGAGTATTGTAGCAATTATGTGATATTGTTGACAAGCGATGCATGCTGAATTGGGGGGAGGATAGAGATCGGAAAATGGCAATCGGACGTGAGAGAGATGGCAGAAATAGGAAACATTTTTCATTAAAAGCGAATTGTTCAGTTTCTTTTAAGCATTTTGGCGAACCATTTGGNATTACACATTTTAATTGTATTAAGAC] [+] EMBL AL932059 [GCAAGAATCGCCGAGGTTAATGTCAACTGTTTCGCCCGTTCGTGCGTAGTATATGATCTTGATTCGATGATATTAACACAAAACAGGTGACCGAACGAAGTGCAACTAAAGAATGGAAAGGGATGGTTTGAAGTTTGAAGGTGAGGTTGTGTGTAAAGATGAGATTTGTTGGAGCAGTCAGAAGTGCAGATGAGTATTGTAGCAATTATGTGATATTGTTGACAAGCGATGCATGCTGAATTGGGGGGAGGATAGAGATCGGAAAATGGCAATCGGACGTGAGAGAGATGGCAGAAATAGGAAACATTTTTCATTAAAAGCGAATTGTTCAGTTTCTTTTAAGCATTTTGGCGAACCATTTGGNATTACACATTTTAATTGTATTAAGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4400#0 ACCGTGTGGTTGACCGAAATCCCACACACACATACACGACATCGGACAATACGGTTCGTA 60 consensus_4400#1 ------------------------------------------------------------ consensus_4400#0 CAGGAAATTCTTGAGCCCGTTTGTTTTTTGAAACAACCATTCACTTTCTTACCGATAATG 120 consensus_4400#1 ------------------------------------------------------------ consensus_4400#0 GTGTAGCATACGTACGATAGGAATATGAATTTTGTATAGCAAGTTACTCCTTTAATCCGT 180 consensus_4400#1 ------------------------------------------------------------ consensus_4400#0 ATCACCACTACTCTACAAATGTGATCGATCGGAGCTATTGCAATTTCTTCACGTGTTTAG 240 consensus_4400#1 ------------------------------------------------------------ consensus_4400#0 TCAGAACGGACGCAGTTTTTTTCTCTATCTAATTGTGATAAGTGAAAGTAGTTTAGACTC 300 consensus_4400#1 -----------------------------------------GCAAGAATCGCCGAGGTTA 19 * * * * * ** * consensus_4400#0 GGTTGTTCAAACTGTGTTTCGCCCGTTTCGTGCGTAGTAATAATGATCTTGATTCGATGA 360 consensus_4400#1 A--TGTC--AACTG--TTTCGCCCGTT-CGTGCGTAGTA--TATGATCTTGATTCGATGA 70 *** ***** *********** *********** ****************** consensus_4400#0 TATTAACACAAAACAGGTGACCGAACGAAGGCAAACTAGAGAATGGAAAAGGGATGGTTT 420 consensus_4400#1 TATTAACACAAAACAGGTGACCGAACGAAGTGCAACTAAAGAATGGAAA-GGGATGGTTT 129 ****************************** ***** ********** ********** consensus_4400#0 GAAGTTTGAAGGTGAGGTTGTGTGTAAAGATGAGATTG--TGGAGCAGTCAGAAG-GCAG 477 consensus_4400#1 GAAGTTTGAAGGTGAGGTTGTGTGTAAAGATGAGATTTGTTGGAGCAGTCAGAAGTGCAG 189 ************************************* *************** **** consensus_4400#0 ATGAGTAT-GTAGCAATTATGTGATATG--TGAAAAGCGATGCATGCGAA--TGGGGGGA 532 consensus_4400#1 ATGAGTATTGTAGCAATTATGTGATATTGTTGACAAGCGATGCATGCTGAATTGGGGGGA 249 ******** ****************** *** ************* * ******** consensus_4400#0 GGATAGAGATCGGAAAA-GGCAATCGGA-GTGAGAGAGATGGCAGAAATAGGAAACATTT 590 consensus_4400#1 GGATAGAGATCGGAAAATGGCAATCGGACGTGAGAGAGATGGCAGAAATAGGAAACATTT 309 ***************** ********** ******************************* consensus_4400#0 TTCAT--AAAGCGAATG--TTAGTTTTTT---AGCATTGCAACATTGCATTCAATTTTAT 643 consensus_4400#1 TTCATTAAAAGCGAATTGTTCAGTTTCTTTTAAGCATTTTGGCGAACCATTTGGNATTAC 369 ***** ********* * ***** ** ****** * **** *** consensus_4400#0 GTATAGAGAT-GAACGAACGTAGCTTTTTGGGACGTTTTGTGCGGACTCTTTCGAACGCA 702 consensus_4400#1 ACATTTTAATTGTATTAAGAC--------------------------------------- 390 ** ** * * ** consensus_4400#0 GTTAGCTTAGCGTACACATCGAACGTACTCGAAGTAGATGGTACTGCTGTGAAAAGGCAC 762 consensus_4400#1 ------------------------------------------------------------ consensus_4400#0 TCGATGGCGTACCGTATCGATAGCGAATTTCATTTCCCGTTACTGACTCGTTCAACTATT 822 consensus_4400#1 ------------------------------------------------------------ consensus_4400#0 TTACATGCGATGCGCAATACTGGTGGACGGCGGGAAGGAGCAGCATCCTCAAATCCGATA 882 consensus_4400#1 ------------------------------------------------------------ consensus_4400#0 TCATCATATCTCGTAGAATAAGCATAAATATCGTTTGATTTCACTGATAGTATAAACAAT 942 consensus_4400#1 ------------------------------------------------------------ consensus_4400#0 TATTTCAATGTCTCT 957 consensus_4400#1 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||