These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4412#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 641 fasta sequence [CCGCCCACGCGTCCGAAAGTAGAAGGCACTTTTTGGTGAAACAGCTTCTGTGTGAGCAAATTTGCGACGAAACCATGGCAGAAGAGGCTGAAGCGACCGGCATTGACAACAATAGCGAGAAGGATTTGGCGACGAATGTGGAAAATCTCTCCCTGACGAACCAGAAGGTTGAAAAACAGGAATCAAAGAAAATTGATATTGTACTTCATGCCACCGGCAGTGCACCGATCTTGAAGCAGAAGAAATGGGCAGTGGACCAGGAAAAGCCCATCAGCGCTATTGTAAAGTTTATCCATAAGTATCTAAAGCTGGATGCGGAAGAACGATTGTTTCTCTACATAAACCAAACTTTCGCTCCTTCGCCGGATCAGATCATCAAAAACCTGTACGAATGTTACGGGACCAACGGAAAACTGATTCTCCACTACGCCAAAACCCAGGCATGGGGATAGAGCAGGGAGCCGCTGCTGTCGAACGTGATTTCGCCCCAAAGAAACGCTTCATTCCCCCCAACACACCGACCGTATTAGTTCGTAATTCATTTCTTGTAAGCTTATTCTGAGTGCAGGAATAAAACACACGCCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCCC] [+] EMBL BM590678 [CCGCCCACGCGTCCGAAAGTAGAAGGCACTTTTTGGTGAAACAGCTTCTGTGTGAGCAAATTTGCGACGAAACCATGGCAGAAGAGGCTGAAGCGACCGGCATTGACAACAATAGCGAGAAGGATTTGGCGACGAATGTGGAAAATCTCTCCCTGACGAACCAGAAGGTTGAAAAACAGGAATCAAAGAAAATTGATATTGTACTTCATGCCACCGGCAGTGCACCGATCTTGAAGCAGAAGAAATGGGCAGTGGACCAGGAAAAGCCCATCAGCGCTATTGTAAAGTTTATCCATAAGTATCTAAAGCTGGATGCGGAAGAACGATTGTTTCTCTACATAAACCAAACTTTCGCTCCTTCGCCGGATCAGATCATCAAAAACCTGTACGAATGTTACGGGACCAACGGAAAACTGATTCTCCACTACGCCAAAACCCAGGCATGGGGATAGAGCAGGGAGCCGCTGCTGTCGAACGTGATTTCGCCCCAAAGAAACGCTTCATTCCCCCCAACACACCGACCGTATTAGTTCGTAATTCATTTCTTGTAAGCTTATTCTGAGTGCAGGAATAAAACACACGCCAT ] [+] EMBL CNS093GS [ tagagcccGCTTCCGTGTGAGC AATTTGCGACGAAACCATGGCAGAAGAGGCTGAAGCGACCGGCATTGACAACAATAGCGAGAAGGATTTGGCGACGAATGTGGAAAATCTCTCCCTGACGAACCAGAAGG TGAAAAACAGGAATCAAAGAAAATTGATATTGTGCTTCATGCCACCGGCAGTGCACCGATCTTGAAGCAGAAGAAATGGGCAGTGGACCAGGAAAAGCCCATCAGCGCTATTGTAAAGTTTATCCATAAGTATCTAAAGCTGGATGCGGAAGAACGATTGTTTCTCTACATAAACCAAACATTCGCTCCTTCGCCGGATCAGATAATCAAAAACCTGTACGAATGTTACGGGACCAACGGAAAACTGATTCTCCACTACGCCAAAACCCAGGCATGGGGATAGAGCAGGGAGCCGCTGCTGTTGAACATGATTTCGCCCCAAAGAAACGCTTCATTCCCCCCAACACACCGACCGTATTAGTTCGTAATTCATTTCTTGTAAGCTTATTCTGAGTGCAGGAATAAAACACACGCCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCCC] consensusID : consensus_4412#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 558 fasta sequence [CCGGTGAATTTTGCACAAAGTAGAAGGCACTTTTTGGTGAAACAGCTTCTGTGTGAGCAAATTTGCGACGAAACCATGGCAGAAGAGGCTGAAGCGACCGGCATTGACAACAATAGCGAGAAGGATTTGGCGACGAATGTGGAAAATCTCTCCCTGACGAACCAGAAGGTTGAAAAACAGGAATCAAAGAAAATTGATATTGTACTTCATGCCACCGGCAGTGCACCGATCTTGAAGCAGAAGAAATGGGCAGTGGACCAGGAAAAGCCCATCAGCGCTATTGTAAAGTTTATCCATAAGTATCTAAAGCTGGATGCGGAAGAACGATTGTTTCTCTACATAAACCAAACTTTCGCTCCTTCGCCGGATCAGATCATCAAAAACCTGTACGAATGTTACGGGACCAACGGAAAACTGATTCTCCACTACGCCAAAACCCAGGCATGGGGATAGAGCAGGGAGCCGCTGCTGTCGAACGTGATTTCGCCCCAAAGAAACGCTTCATTCCCCCCAACACACCGACCGTATTAGTTCGTAATTCATTTCTTGTAAGCTTAT] [+] EMBL BM621675 [CCGGTGAATTTTGCACAAAGTAGAAGGCACTTTTTGGTGAAACAGCTTCTGTGTGAGCAAATTTGCGACGAAACCATGGCAGAAGAGGCTGAAGCGACCGGCATTGACAACAATAGCGAGAAGGATTTGGCGACGAATGTGGAAAATCTCTCCCTGACGAACCAGAAGGTTGAAAAACAGGAATCAAAGAAAATTGATATTGTACTTCATGCCACCGGCAGTGCACCGATCTTGAAGCAGAAGAAATGGGCAGTGGACCAGGAAAAGCCCATCAGCGCTATTGTAAAGTTTATCCATAAGTATCTAAAGCTGGATGCGGAAGAACGATTGTTTCTCTACATAAACCAAACTTTCGCTCCTTCGCCGGATCAGATCATCAAAAACCTGTACGAATGTTACGGGACCAACGGAAAACTGATTCTCCACTACGCCAAAACCCAGGCATGGGGATAGAGCAGGGAGCCGCTGCTGTCGAACGTGATTTCGCCCCAAAGAAACGCTTCATTCCCCCCAACACACCGACCGTATTAGTTCGTAATTCATTTCTTGTAAGCTTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4412#0 CCGCCCACGCGTCCG-AAAGTAGAAGGCACTTTTTGGTGAAACAGCTTCTGTGTGAGCAA 59 consensus_4412#1 CCGGTGAATTTTGCACAAAGTAGAAGGCACTTTTTGGTGAAACAGCTTCTGTGTGAGCAA 60 *** * * * ******************************************** consensus_4412#0 ATTTGCGACGAAACCATGGCAGAAGAGGCTGAAGCGACCGGCATTGACAACAATAGCGAG 119 consensus_4412#1 ATTTGCGACGAAACCATGGCAGAAGAGGCTGAAGCGACCGGCATTGACAACAATAGCGAG 120 ************************************************************ consensus_4412#0 AAGGATTTGGCGACGAATGTGGAAAATCTCTCCCTGACGAACCAGAAGGTTGAAAAACAG 179 consensus_4412#1 AAGGATTTGGCGACGAATGTGGAAAATCTCTCCCTGACGAACCAGAAGGTTGAAAAACAG 180 ************************************************************ consensus_4412#0 GAATCAAAGAAAATTGATATTGTACTTCATGCCACCGGCAGTGCACCGATCTTGAAGCAG 239 consensus_4412#1 GAATCAAAGAAAATTGATATTGTACTTCATGCCACCGGCAGTGCACCGATCTTGAAGCAG 240 ************************************************************ consensus_4412#0 AAGAAATGGGCAGTGGACCAGGAAAAGCCCATCAGCGCTATTGTAAAGTTTATCCATAAG 299 consensus_4412#1 AAGAAATGGGCAGTGGACCAGGAAAAGCCCATCAGCGCTATTGTAAAGTTTATCCATAAG 300 ************************************************************ consensus_4412#0 TATCTAAAGCTGGATGCGGAAGAACGATTGTTTCTCTACATAAACCAAACTTTCGCTCCT 359 consensus_4412#1 TATCTAAAGCTGGATGCGGAAGAACGATTGTTTCTCTACATAAACCAAACTTTCGCTCCT 360 ************************************************************ consensus_4412#0 TCGCCGGATCAGATCATCAAAAACCTGTACGAATGTTACGGGACCAACGGAAAACTGATT 419 consensus_4412#1 TCGCCGGATCAGATCATCAAAAACCTGTACGAATGTTACGGGACCAACGGAAAACTGATT 420 ************************************************************ consensus_4412#0 CTCCACTACGCCAAAACCCAGGCATGGGGATAGAGCAGGGAGCCGCTGCTGTCGAACGTG 479 consensus_4412#1 CTCCACTACGCCAAAACCCAGGCATGGGGATAGAGCAGGGAGCCGCTGCTGTCGAACGTG 480 ************************************************************ consensus_4412#0 ATTTCGCCCCAAAGAAACGCTTCATTCCCCCCAACACACCGACCGTATTAGTTCGTAATT 539 consensus_4412#1 ATTTCGCCCCAAAGAAACGCTTCATTCCCCCCAACACACCGACCGTATTAGTTCGTAATT 540 ************************************************************ consensus_4412#0 CATTTCTTGTAAGCTTATTCTGAGTGCAGGAATAAAACACACGCCATAAAAAAAAAAAAA 599 consensus_4412#1 CATTTCTTGTAAGCTTAT------------------------------------------ 558 ****************** consensus_4412#0 AAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCCC 641 consensus_4412#1 ------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||