These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4414#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence [CCGCGCAGTGATCGGAGAGGTCGAAATCGAAGTCGAACGCCACCCCGTTCGCAGATCCCTCGCTCAAACCTGGTGCGGTGGTAGGGGGGACCGTTGTGTGGTAGAAAATTGTTACGGGTTTTTTTTTGCGCGCGCGCGCCCTAGCCCAACGTTCCGGTAATTTCCAACGCGTTCGCCAATCATCGTGCGTGTGCCAGGTTACGCGATACAGATTGGTGTGTGTGTGTGTGTGTAGTGCTTAGTGTCTCTCCGTGGGTGAAAGTGTGCCCTCTGTTTGCTCAAAACAATAACAACAGAAAGAAAAAAGAAAGAAGCAGCAGCAACGCGTACAGGGTGAAGGTCACGCGATACTGCCCCAACCACCAGGAGTGGAGCGAAAGTTCAAGCGGCTACCCCTTTCCGAGCACCCGCTCGGCACAACCGCGATCAACCAGCGCCGAAAAGCCCGTCGACGATGGGTCGCCATCACCTCAACCTGGGGCTGCTCCTGCTTACCTTCCTGCTGGGCATCGTGTCGCTCCACGCCAGCCCGCAGTCGTACGTGCCGCTGATACGCGATCGCGCAATCCGCGACGACGACATGAACGCCAACATCGAGCGCATCTTCCGAAAGGACTTTGGCAAACCGGCGCAAACGGCAAAGGACGGGCAGAGCGACGAGGTGGAACCGTCGCCGACCGAGCTCGTCGCACGGG] [+] EMBL BM639076 [CCGCGCAGTGATCGGAGAGGTCGAAATCGAAGTCGAACGCCACCCCGTTCGCAGATCCCTCGCTCAAACCTGGTGCGGTGGTAGGGGGGACCGTTGTGTGGTAGAAAATTGTTACGGGTTTTTTTTTGCGCGCGCGCGCCCTAGCCCAACGTTCCGGTAATTTCCAACGCGTTCGCCAATCATCGTGCGTGTGCCAGGTTACGCGATACAGATTGGTGTGTGTGTGTGTGTGTAGTGCTTAGTGTCTCTCCGTGGGTGAAAGTGTGCCCTCTGTTTGCTCAAAACAATAACAACAGAAAGAAAAAAGAAAGAAGCAGCAGCAACGCGTACAGGGTGAAGGTCACGCGATACTGCCCCAACCACCAGGAGTGGAGCGAAAGTTCAAGCGGCTACCCCTTTCCGAGCACCCGCTCGGCACAACCGCGATCAACCAGCGCCGAAAAGCCCGTCGACGATGGGTCGCCATCACCTCAACCTGGGGCTGCTCCTGCTTACCTTCCTGCTGGGCATCGTGTCGCTCCACGCCAGCCCGCAGTCGTACGTGCCGCTGATACGCGATCGCGCAATCCGCGACGACGACATGAACGCCAACATCGAGCGCATCTTCCGAAAGGACTTTGGCAAACCGGCGCAAACGGCAAAGGACGGGCAGAGCGACGAGGTGGAACCGTCGCCGACCGAGCTCGTCGCACGGG] consensusID : consensus_4414#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 486 fasta sequence [CGCCACCCCGTTCGCTGATCCCTCGCTCAAACCTGGTGCGGTGGTAGGGGGGACCGTTGTGTGGTAGAAAATTGAGGCGGGTTACGGGTTTTTTTTTTGCGCGCGCGCGCCCTAGCCCAACGTTCCGGTAATTTCCAACGCGTTCGCCAATCATCGTGCGTGTGCCAGGTTACGCGATACAGATTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGTGCTTAGTGTCTCTCCGTGGGTGAAAGTGTGCCCTCTGTTTGCTCAAAACAATAACAACAGAAAGAAAGAAAAAAGAAAGAAGCAGCAGCAACGCGTACAGGGTGAAGGTCACGCGATACTGCCCCAACCACCAGGAGTGGAGCGAAAGTTCAAGCGGCTACCCCTTTCCGAGCACCCGCTCGGCACAACCGCGATCAACCAGCGCCGAAAAGCCCGTCGACGATGGGTCGCCATCACCTCAACCTGGGGCTGCTCCTGC] [+] EMBL CNS08UYF [CGCCACCCCGTTCGCTGATCCCTCGCTCAAACCTGGTGCGGTGGTAGGGGGGACCGTTGTGTGGTAGAAAATTGAGGCGGGTTACGGGTTTTTTTTTTGCGCGCGCGCGCCCTAGCCCAACGTTCCGGTAATTTCCAACG ] [+] EMBL CNS08IO8 [ GTTCGCTGATCCCTCGCTCAAACCTGGTGCGGTGGTAGGGGGGACCGTTGTGTGGTAGAAAATTGAGGCGGGTTACGGGTTTTTTTTTTGCGCGCGCGCGCCCTAGCCCAACGTTCCGGTAATTTCCAACGCGTTCGCCAATCATCGTGCGTGTGCCAGGTTACGCGATACAGATTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGTGCTTAGTGTCTCTCCGTGGGTGAAAGTGTGCCCTCTGTTTGCTCAAAACAATAACAACAGAAAGAAAGAAAAAAGAAAGAAGCAGCAGCAACGCGTACAGGGTGAAGGTCACGCGATACTGCCCCAACCACCAGGAGTGGAGCGAAAGTTCAAGCGGCTACCCCTTTCCGAGCACCCGCTCGGCACAACCGCGATCAACCAGCGCCGAAAAGCCCGTCGACGATGGGTCGCCATCACCTCAACCTGGGGCTGCTCCTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4414#0 CCGCGCAGTGATCGGAGAGGTCGAAATCGAAGTCGAACGCCACCCCGTTCGCAGATCCCT 60 consensus_4414#1 -------------------------------------CGCCACCCCGTTCGCTGATCCCT 23 *************** ******* consensus_4414#0 CGCTCAAACCTGGTGCGGTGGTAGGGGGGACCGTTGTGTGGTAGAAAATTG-------TT 113 consensus_4414#1 CGCTCAAACCTGGTGCGGTGGTAGGGGGGACCGTTGTGTGGTAGAAAATTGAGGCGGGTT 83 *************************************************** ** consensus_4414#0 ACGGGTTTTTTTTT-GCGCGCGCGCGCCCTAGCCCAACGTTCCGGTAATTTCCAACGCGT 172 consensus_4414#1 ACGGGTTTTTTTTTTGCGCGCGCGCGCCCTAGCCCAACGTTCCGGTAATTTCCAACGCGT 143 ************** ********************************************* consensus_4414#0 TCGCCAATCATCGTGCGTGTGCCAGGTTACGCGATACAGATTGGTGTGTGTGTGTGTGTG 232 consensus_4414#1 TCGCCAATCATCGTGCGTGTGCCAGGTTACGCGATACAGATTGGTGTGTGTGTGTGTGTG 203 ************************************************************ consensus_4414#0 T--------------------AGTGCTTAGTGTCTCTCCGTGGGTGAAAGTGTGCCCTCT 272 consensus_4414#1 TGTGTGTGTGTGTGTGTGTGTAGTGCTTAGTGTCTCTCCGTGGGTGAAAGTGTGCCCTCT 263 * *************************************** consensus_4414#0 GTTTGCTCAAAACAATAACAACAGAAAGAAA----AAAGAAAGAAGCAGCAGCAACGCGT 328 consensus_4414#1 GTTTGCTCAAAACAATAACAACAGAAAGAAAGAAAAAAGAAAGAAGCAGCAGCAACGCGT 323 ******************************* ************************* consensus_4414#0 ACAGGGTGAAGGTCACGCGATACTGCCCCAACCACCAGGAGTGGAGCGAAAGTTCAAGCG 388 consensus_4414#1 ACAGGGTGAAGGTCACGCGATACTGCCCCAACCACCAGGAGTGGAGCGAAAGTTCAAGCG 383 ************************************************************ consensus_4414#0 GCTACCCCTTTCCGAGCACCCGCTCGGCACAACCGCGATCAACCAGCGCCGAAAAGCCCG 448 consensus_4414#1 GCTACCCCTTTCCGAGCACCCGCTCGGCACAACCGCGATCAACCAGCGCCGAAAAGCCCG 443 ************************************************************ consensus_4414#0 TCGACGATGGGTCGCCATCACCTCAACCTGGGGCTGCTCCTGCTTACCTTCCTGCTGGGC 508 consensus_4414#1 TCGACGATGGGTCGCCATCACCTCAACCTGGGGCTGCTCCTGC----------------- 486 ******************************************* consensus_4414#0 ATCGTGTCGCTCCACGCCAGCCCGCAGTCGTACGTGCCGCTGATACGCGATCGCGCAATC 568 consensus_4414#1 ------------------------------------------------------------ consensus_4414#0 CGCGACGACGACATGAACGCCAACATCGAGCGCATCTTCCGAAAGGACTTTGGCAAACCG 628 consensus_4414#1 ------------------------------------------------------------ consensus_4414#0 GCGCAAACGGCAAAGGACGGGCAGAGCGACGAGGTGGAACCGTCGCCGACCGAGCTCGTC 688 consensus_4414#1 ------------------------------------------------------------ consensus_4414#0 GCACGGG 695 consensus_4414#1 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||