These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4417#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 714 fasta sequence [CCGAACGAAACGAAGAAAGACACCACGAACGACGACCTAGCGGCGCGGAAAAGTGTCGAAAAAAGGGAATATTCTCACTCGCCAGAGCACGGGAAAAGTGCTTTCCCCGACGCCAAATCTTAATCGATTGCAGTGCGACCGTGCGGTTCCGGCTGTTAACTAACGTGCGCTTACACTGCCCATATCCGTGAGCCCCTGGTGATAAGAAGCGGAAGTGAAAGAAAGTGAAGAAGAGTGAGAGAAAGAGAGGGAGAGTGCGTGTGTGAGAGAGATAGGGAGAACAAAAGCACCGCACAAAGTCAATTGGTGATTAGGGCGGATAGACTGCGCTGGCTGAATTGATCCCGAAACACCGAACGGCGGTCGTACCCCTACTGTGAGTGGTGCACAAACAGGGAAATCCATCCCAAACCAAAACCGAACCGAACCAATCATCATGAATTTCCTCCGGTTTGGCCAGTCGGCCGACATCGACGTCGTGTTCGATGGGGCAGAAAACCGGCAGCAGGCGGAAATCAAAACAGAGGACGGCAAGAAGGACAAGTACCTGCTGTACTACGACGGCGAAACGGTGGGCGGAAAGGTGAACATTACGCTCAAAAAACCGGGCAGCAAGCTGGAACACCAGGGTATCAAAATCGAGCTTATCGGTCAAATTGAATTGTATTACGATAGGGGCAATCATCACGACTTTCTGAGCCTGGTGCGCGAGCT] [+] EMBL BM609188 [CCGAACGAAACGAAGAAAGACACCACGAACGACGACCTAGCGGCGCGGAAAAGTGTCGAAAAAAGGGAATATTCTCACTCGCCAGAGCACGGGAAAAGTGCTTTCCCCGACGCCAAATCTTAATCGATTGCAGTGCGACCGTGCGGTTCCGGCTGTTAACTAACGTGCGCTTACACTGCCCATATCCGTGAGCCCCTGGTGATAAGAAGCGGAAGTGAAAGAAAGTGAAGAAGAGTGAGAGAAAGAGAGGGAGAGTGCGTGTGTGAGAGAGATAGGGAGAACAAAAGCACCGCACAAAGTCAATTGGTGATTAGGGCGGATAGACTGCGCTGGCTGAATTGATCCCGAAACACCGAACGGCGGTCGTACCCCTACTGTGAGTGGTGCACAAACAGGGAAATCCATCCCAAACCAAAACCGAACCGAACCAATCATCATGAATTTCCTCCGGTTTGGCCAGTCGGCCGACATCGACGTCGTGTTCGATGGGGCAGAAAACCGGCAGCAGGCGGAAATCAAAACAGAGGACGGCAAGAAGGACAAGTACCTGCTGTACTACGACGGCGAAACGGTGGGCGGAAAGGTGAACATTACGCTCAAAAAACCGGGCAGCAAGCTGGAACACCAGGGTATCAAAATCGAGCTTATCGGTCAAATTGAATTGTATTACGATAGGGGCAATCATCACGACTTTCTGAGCCTGGTGCGCGAGCT] consensusID : consensus_4417#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 656 fasta sequence [CCGCCCACGCGTCCGGTCGAAAAAAGGGAATATTCTCACTCGCCAGAGCACGGGAAAAGTGCTTTCCCCGACGGTACGAAAGGAAATCGAGGATTGAGTGCATTGTGCGTGCTGTGTGCGGTGCGTTCTTATATAATACAATCGGCTCTAGCGAACCCTCTCGGGCAAGTCCAGTCGTCGTCCTCGTCGTTGTCGTCGTCGTTGTCGTCGTTTGTCTCAACAGAGTTGCACAGCCTGTTCTTGGTGTGGGGCGAGGCGGTGGTGCATTCCACCGAAATTTATCCACTCACTACCCTTTTCCGACTGCAAAAGTGTTCTTCACCACGAAAAGTGGCAACAAAACGCATCTCACACGGTGTAAGAGTGCAGACGAGACGAGAGAGAGAGAGAGACAAAAAAACCGCAGACTCACTCTTGCCCCAGCAGAGGAGGGAACGGAAGCCGCATCAAATCATTCTCCCCCCAGCAGTAGAGGTGGGGTCCGGAAGTGGTGTTCTGGTTTTAGGCCCAGACTGTCACATACACACACACACATACACACGTCACGTACCGCGTTAATTGAGGCAAAAAGTGTGTAAAGCCCTCCGCCGTGTGTGTTCCGCACGAACAGCTTTCACAGAGGCCTCCGTGTGTGTGTTTGTGTGTGTATGCGTGTG] [+] EMBL BM584849 [CCGCCCACGCGTCCGGTCGAAAAAAGGGAATATTCTCACTCGCCAGAGCACGGGAAAAGTGCTTTCCCCGACGGTACGAAAGGAAATCGAGGATTGAGTGCATTGTGCGTGCTGTGTGCGGTGCGTTCTTATATAATACAATCGGCTCTAGCGAACCCTCTCGGGCAAGTCCAGTCGTCGTCCTCGTCGTTGTCGTCGTCGTTGTCGTCGTTTGTCTCAACAGAGTTGCACAGCCTGTTCTTGGTGTGGGGCGAGGCGGTGGTGCATTCCACCGAAATTTATCCACTCACTACCCTTTTCCGACTGCAAAAGTGTTCTTCACCACGAAAAGTGGCAACAAAACGCATCTCACACGGTGTAAGAGTGCAGACGAGACGAGAGAGAGAGAGAGACAAAAAAACCGCAGACTCACTCTTGCCCCAGCAGAGGAGGGAACGGAAGCCGCATCAAATCATTCTCCCCCCAGCAGTAGAGGTGGGGTCCGGAAGTGGTGTTCTGGTTTTAGGCCCAGACTGTCACATACACACACACACATACACACGTCACGTACCGCGTTAATTGAGGCAAAAAGTGTGTAAAGCCCTCCGCCGTGTGTGTTCCGCACGAACAGCTTTCACAGAGGCCTCCGTGTGTGTGTTTGTGTGTGTATGCGTGTG] consensusID : consensus_4417#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 485 fasta sequence [CCACGAGGTTAAACGAAGAAAGACACCACGAACGACGACCTAGCGGCGCGGAAAAGTGTCGAAAAAAGGGAATATTCTCACTCGCCAGAGCACGGGAAAAGTGCTTTCCCCGACGTGCGACCGTGCGGTTCCGGCTGTTAACTAACGTGCGCTTACACTGCCCATATCCGTGAGCCCCTGGTGATAAGAAGCGGAAGTGAAAGAAAGTGAAGAAGAGTGAGAGAAAGAGAGGGAGAGTGCGTGTGTGAGAGAGATAGGGAGAACAAAAGCACCGCACAAAGTCAATTGGTGATTAGGGCGGATAGACTGCGCTGGCTGAATTGATCCCGAAACACCGAACGGCGGTCGTACCCCTACTGTGAGTGGTGCACAAACAGGGAAATCCATCCCAAACCAAAACCGAACCGAACCAATCATCATGAATTTCCTCCGGTTTGGCCAGTCGGCCGACATCGACGTCGTGTTCGATGGGGCAGAAAACCGGC] [+] EMBL AL933773 [CCACGAGGTTAAACGAAGAAAGACACCACGAACGACGACCTAGCGGCGCGGAAAAGTGTCGAAAAAAGGGAATATTCTCACTCGCCAGAGCACGGGAAAAGTGCTTTCCCCGACGTGCGACCGTGCGGTTCCGGCTGTTAACTAACGTGCGCTTACACTGCCCATATCCGTGAGCCCCTGGTGATAAGAAGCGGAAGTGAAAGAAAGTGAAGAAGAGTGAGAGAAAGAGAGGGAGAGTGCGTGTGTGAGAGAGATAGGGAGAACAAAAGCACCGCACAAAGTCAATTGGTGATTAGGGCGGATAGACTGCGCTGGCTGAATTGATCCCGAAACACCGAACGGCGGTCGTACCCCTACTGTGAGTGGTGCACAAACAGGGAAATCCATCCCAAACCAAAACCGAACCGAACCAATCATCATGAATTTCCTCCGGTTTGGCCAGTCGGCCGACATCGACGTCGTGTTCGATGGGGCAGAAAACCGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4417#0 ---CCGAACGAAACGAAGAAAGACACCACGAACGACGACCTAGCGGCGCGGAAAAGTGTC 57 consensus_4417#2 CCACGAGGTTAAACGAAGAAAGACACCACGAACGACGACCTAGCGGCGCGGAAAAGTGTC 60 consensus_4417#1 ---------------------------------------CCGCCCACGCGTCCG---GTC 18 * * **** *** consensus_4417#0 GAAAAAAGGGAATATTCTCACTCGCCAGAGCACGGGAAAAGTGCTTTCCCCGACGCCAAA 117 consensus_4417#2 GAAAAAAGGGAATATTCTCACTCGCCAGAGCACGGGAAAAGTGCTTTCCCCGACG----- 115 consensus_4417#1 GAAAAAAGGGAATATTCTCACTCGCCAGAGCACGGGAAAAGTGCTTTCCCCGACGGTACG 78 ******************************************************* consensus_4417#0 TCTTAATCGATTGCAGTGCGACCGTGCGGTTCCGGCTGTTAACTA-ACGTGCGCTTACAC 176 consensus_4417#2 ----------------TGCGACCGTGCGGTTCCGGCTGTTAACTA-ACGTGCGCTTACAC 158 consensus_4417#1 AA--AGGAAATCGAGGATTGAGTGCATTGTGCGTGCTGTGTGCGGTGCGTTCTTATATAA 136 ** * ** * ***** * *** * ** * consensus_4417#0 TGC---CCATATCCGTGAGCCCCTGGTGATAAG---AAGCG-----------GAAGTGAA 219 consensus_4417#2 TGC---CCATATCCGTGAGCCCCTGGTGATAAG---AAGCG-----------GAAGTGAA 201 consensus_4417#1 TACAATCGGCTCTAGCGAACCCTCTCGGGCAAGTCCAGTCGTCGTCCTCGTCGTTGTCGT 196 * * * * ** *** * *** * ** * ** consensus_4417#0 AGAAAGTGAAGAAGAGTGAGAGAA-AGAGAGGGAGAGTGCGTGTGTGA-GAGAGATAGGG 277 consensus_4417#2 AGAAAGTGAAGAAGAGTGAGAGAA-AGAGAGGGAGAGTGCGTGTGTGA-GAGAGATAGGG 259 consensus_4417#1 CGTCGTTGTCGTCGTTTGTCTCAACAGAGTTGCACAGCCTGTTCTTGGTGTGGGGCGAGG 256 * ** * * ** ** **** * * ** ** ** * * * ** consensus_4417#0 AGAACAAAAGCACCGCACAAAGTCAATTGGTGATTAGGGCGGATAGACTGCGCTGGCTGA 337 consensus_4417#2 AGAACAAAAGCACCGCACAAAGTCAATTGGTGATTAGGGCGGATAGACTGCGCTGGCTGA 319 consensus_4417#1 CGGTGGTGCATTCCACCGAAATTTATCCACTCACTACCCTTTTCCGACTGCAAAAGTGTT 316 * ** * *** * * * * ** ****** * consensus_4417#0 ATTGATCCCGAAACACCG-AACGGCGGTCGTACCCCTACTGTG-AGTGGTGCACAAACAG 395 consensus_4417#2 ATTGATCCCGAAACACCG-AACGGCGGTCGTACCCCTACTGTG-AGTGGTGCACAAACAG 377 consensus_4417#1 CTTCACCACGAAAAGTGGCAACAAAACGCAT-CTCACACGGTGTAAGAGTGCAGACGAGA 375 ** * * ***** * *** * * * * ** *** * ***** * consensus_4417#0 GGAAATCCATCCCAAACCAAAACCGAACCGAACCAATCATCATGAATTTCCTCCGGTTTG 455 consensus_4417#2 GGAAATCCATCCCAAACCAAAACCGAACCGAACCAATCATCATGAATTTCCTCCGGTTTG 437 consensus_4417#1 CGAGAGAGAGAGAGAGACAAAA--AAACCGCAG-ACTCACTCTTGCCCCAGCAGAGGAGG 432 ** * * * ***** ***** * * *** * * * consensus_4417#0 GCCAGTCGGCCGACATCGACGTCGTGTTCGATGGGGCAG-AAAACCGGCAGCAGGCGGAA 514 consensus_4417#2 GCCAGTCGGCCGACATCGACGTCGTGTTCGATGGGGCAG-AAAACCGGC----------- 485 consensus_4417#1 GAACGGAAGCCG-CATCAA-ATCATTCTCCCCCCAGCAGTAGAGGTGGGGTCCGGAAGTG 490 * * **** **** * ** * ** **** * * ** consensus_4417#0 ATCAAAACAGAGGACGGCAAGAAGGACAAGTACCTGCTGTACTACGACGGCGAAACGGTG 574 consensus_4417#2 ------------------------------------------------------------ consensus_4417#1 GTGTTCTGGTTTTAGGCCCAGACTGTCACATACACACACACACATACACACGTCACGTAC 550 consensus_4417#0 GGCGGAAAGGTGAACATTACGCTCAAAAAACCGGGCAGCAAGCTGGAACACCAGGGTATC 634 consensus_4417#2 ------------------------------------------------------------ consensus_4417#1 CGCGTTAATTGAGGCAAAAAGTGTGTAAAGCCCTCCGCCGTGTGTGTTCCGCACGAACAG 610 consensus_4417#0 AAAATCGAGCTTATCGGTCAAATTGAATTGTATTACGATAGGGGCAATCATCACGACTTT 694 consensus_4417#2 ------------------------------------------------------------ consensus_4417#1 CTTTCACAGAGGCCTCCGTGTGTGTGTTTGTGTGTGTATGCGTGTG-------------- 656 consensus_4417#0 CTGAGCCTGGTGCGCGAGCT 714 consensus_4417#2 -------------------- consensus_4417#1 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||