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Anopheles gambiae
cluster # 4423 cluster # 4423       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4423#0 length = 1145 sequences # 1  
consensus_4423#1 length = 753 sequences # 2  

consensusID : consensus_4423#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1145
fasta sequence
                              [TCAGGTGTGCACAGCGTCCGTTTAGTAGGGGGTTTTCCGCAAACGCCCGTGACTGTTTATCGCCCAGAAGTTCGAGCTTCGACTAGAATCCACGTGTGTGTGAAGTGAGCTGTGGCTGTGTGGTGCTAGTGTTGGCGTTCTCTATCCCAGCAAGCATTGGTTTGGGTGAAACGTGAAAAAAGAAAAAAGGCTCCGATCAACGGAAAAGTGGTGACCGAGTGACCCCCGGTGCGAGTGTGTTTGTGTGTGCCTACGCAAAAGTGGCCCACCGACTTGGCCACTTTCGGGTGTGTGTGTGTGTGCGAGTGTTTGTGTGTGAGTGTGTGTGTGTACCGCGGCTTCGTGCTGAAGTGTTGAAGATGTCCTCCATATTCGCTCAGGGGAGTGGTTGAGCGTGCCACGGCCGAACTATCGAAACGCATCAACGGCCTTGGCTGCCGGTCGAAGCACCATGCATGGCAGTGGCGGTGGTGGTGGCGGTGGCGGTGGCAAATCGGGCGAGAAGGCCAGCGTGATGGAGCGCGTCACGAACGTGCTGTGCGGTGGCAGCAGCTCCAGCAAGCTCCAGCAACGCCGGCCAATCTCACCATNNNTTCTACGTTAATTAGACAGGGGAGCGAGGACGGTGGTGGAACATTCAGTTAGTTTCTTTCTTTTTATGTGAGCTTCTTTGCTCTTCTTTTTAACGCAATTTATAAGGCACAGCTGCCAGCTAATGCGTAGTTTACAACACTATTTTTTACTTACCTTTTTTACACGCATACTTTCGTGGCTTGTAACGGAACAGTCACTTTGGCCATCGACTCCACAATGCAGGAGAGAGGAAACTATTGTATGGCAACCACGATACTTACTGATTGGTTTTTAAGTGTACAGCCCTGATCTCACTTGTTAAATGCCCCCTCGAGCAAGGAAACTCAAAATTAATGTTAACTTAAAACAGGACAGCAAAAAAATGGGTAGATATGAAAAGGGCAACAAAGGGAAAGAGTAAGCCTGCAATTGCTAAAACAAAACAAAACAAAAAAGAAAACAAAAATAATCTAATTTTGTCGAATGTTAAATGGCTGTGTAGATAAGAGAGTGTATAAAACCCTAATGCAGAAAGAGAAGAAAGAGAAATTGATTGAAAAAAAAAAAACAAG]

[+] EMBL AF002237             [TCAGGTGTGCACAGCGTCCGTTTAGTAGGGGGTTTTCCGCAAACGCCCGTGACTGTTTATCGCCCAGAAGTTCGAGCTTCGACTAGAATCCACGTGTGTGTGAAGTGAGCTGTGGCTGTGTGGTGCTAGTGTTGGCGTTCTCTATCCCAGCAAGCATTGGTTTGGGTGAAACGTGAAAAAAGAAAAAAGGCTCCGATCAACGGAAAAGTGGTGACCGAGTGACCCCCGGTGCGAGTGTGTTTGTGTGTGCCTACGCAAAAGTGGCCCACCGACTTGGCCACTTTCGGGTGTGTGTGTGTGTGCGAGTGTTTGTGTGTGAGTGTGTGTGTGTACCGCGGCTTCGTGCTGAAGTGTTGAAGATGTCCTCCATATTCGCTCAGGGGAGTGGTTGAGCGTGCCACGGCCGAACTATCGAAACGCATCAACGGCCTTGGCTGCCGGTCGAAGCACCATGCATGGCAGTGGCGGTGGTGGTGGCGGTGGCGGTGGCAAATCGGGCGAGAAGGCCAGCGTGATGGAGCGCGTCACGAACGTGCTGTGCGGTGGCAGCAGCTCCAGCAAGCTCCAGCAACGCCGGCCAATCTCACCATNNNTTCTACGTTAATTAGACAGGGGAGCGAGGACGGTGGTGGAACATTCAGTTAGTTTCTTTCTTTTTATGTGAGCTTCTTTGCTCTTCTTTTTAACGCAATTTATAAGGCACAGCTGCCAGCTAATGCGTAGTTTACAACACTATTTTTTACTTACCTTTTTTACACGCATACTTTCGTGGCTTGTAACGGAACAGTCACTTTGGCCATCGACTCCACAATGCAGGAGAGAGGAAACTATTGTATGGCAACCACGATACTTACTGATTGGTTTTTAAGTGTACAGCCCTGATCTCACTTGTTAAATGCCCCCTCGAGCAAGGAAACTCAAAATTAATGTTAACTTAAAACAGGACAGCAAAAAAATGGGTAGATATGAAAAGGGCAACAAAGGGAAAGAGTAAGCCTGCAATTGCTAAAACAAAACAAAACAAAAAAGAAAACAAAAATAATCTAATTTTGTCGAATGTTAAATGGCTGTGTAGATAAGAGAGTGTATAAAACCCTAATGCAGAAAGAGAAGAAAGAGAAATTGATTGAAAAAAAAAAAACAAG]


>consensus_4423#0 TCAGGTGTGCACAGCGTCCGTTTAGTAGGGGGTTTTCCGCAAACGCCCGTGACTGTTTAT CGCCCAGAAGTTCGAGCTTCGACTAGAATCCACGTGTGTGTGAAGTGAGCTGTGGCTGTG TGGTGCTAGTGTTGGCGTTCTCTATCCCAGCAAGCATTGGTTTGGGTGAAACGTGAAAAA AGAAAAAAGGCTCCGATCAACGGAAAAGTGGTGACCGAGTGACCCCCGGTGCGAGTGTGT TTGTGTGTGCCTACGCAAAAGTGGCCCACCGACTTGGCCACTTTCGGGTGTGTGTGTGTG TGCGAGTGTTTGTGTGTGAGTGTGTGTGTGTACCGCGGCTTCGTGCTGAAGTGTTGAAGA TGTCCTCCATATTCGCTCAGGGGAGTGGTTGAGCGTGCCACGGCCGAACTATCGAAACGC ATCAACGGCCTTGGCTGCCGGTCGAAGCACCATGCATGGCAGTGGCGGTGGTGGTGGCGG TGGCGGTGGCAAATCGGGCGAGAAGGCCAGCGTGATGGAGCGCGTCACGAACGTGCTGTG CGGTGGCAGCAGCTCCAGCAAGCTCCAGCAACGCCGGCCAATCTCACCATNNNTTCTACG TTAATTAGACAGGGGAGCGAGGACGGTGGTGGAACATTCAGTTAGTTTCTTTCTTTTTAT GTGAGCTTCTTTGCTCTTCTTTTTAACGCAATTTATAAGGCACAGCTGCCAGCTAATGCG TAGTTTACAACACTATTTTTTACTTACCTTTTTTACACGCATACTTTCGTGGCTTGTAAC GGAACAGTCACTTTGGCCATCGACTCCACAATGCAGGAGAGAGGAAACTATTGTATGGCA ACCACGATACTTACTGATTGGTTTTTAAGTGTACAGCCCTGATCTCACTTGTTAAATGCC CCCTCGAGCAAGGAAACTCAAAATTAATGTTAACTTAAAACAGGACAGCAAAAAAATGGG TAGATATGAAAAGGGCAACAAAGGGAAAGAGTAAGCCTGCAATTGCTAAAACAAAACAAA ACAAAAAAGAAAACAAAAATAATCTAATTTTGTCGAATGTTAAATGGCTGTGTAGATAAG AGAGTGTATAAAACCCTAATGCAGAAAGAGAAGAAAGAGAAATTGATTGAAAAAAAAAAA ACAAG



consensusID : consensus_4423#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 753
fasta sequence
                              [CCGCGCAAACGCCCGTGACTGTTTATCGTTCGAGCTTCGACTAGAATCCACGGGTGATTGAAGTGAGCTGTGCGTGTGTGGTGCTAGTGTTGGCGTTCTCTATCCCAGCAAGCATTGGTTTGGGTGAAACGTGAAAAAAAGAAAAAGGCTCCGATCAACGGAAAAGTGGTGACCGAGTGACCCCCGGTGCGAGTGTGTTTGTGTGTGCCTACGCAAAAGTGGCCCACGGCACTTGGCCACTTTCGGGAGTGTGTGTGCGTGTGTTTGTGTGTGAGTGTGTGTACCGCGGCTTCGTGCTGAATGTTGAAGATGTCCTCCATATCCGCCCAGGGAGTGGTTGAGCGTGCCTCGGCCGAACTATCGAAACGCATCAACGGCCTTGGGCTGCGGTCGAAGCACCATCATGGCAGTGGCGGTGGTGGCGGCGGCGGCGGTGGCAAGTCGGGCGAGAAGGCCAGCGTGATGGAGCGCGTCACGAACGTGCTGTGCGGTGGCAGCAGCTCCAGCAACTCCAGCAACGCCGCCAATCTCTCCATCCAAACCGCCGGCCAGTCACAGTCGGGCGGTGGTGGAGGCATCACTGGCGGAAGGTTGGTTGGTGGTGGCCACGCTCCCGAGAAACCGTCCCGTGTGTCCAACACAACCGGGGGAAGGTAACAGTGCGGGCGGCAAGGGCTCGATGCTTGGCATGGGCGCGGGACCTGGTGGCAAATCGCAGTCCAACACACCGCAGTCGCTGCGCAAGATTGGCCA]

[+] EMBL BM656204             [CCGCGCAAACGCCCGTGACTGTTTATCGTTCGAGCTTCGACTAGAATCCACGGGTGATTGAAGTGAGCTGTGCGTGTGTGGTGCTAGTGTTGGCGTTCTCTATCCCAGCAAGCATTGGTTTGGGTGAAACGTGAAAAAAAGAAAAAGGCTCCGATCAACGGAAAAGTGGTGACCGAGTGACCCCCGGTGCGAGTGTGTTTGTGTGTGCCTACGCAAAAGTGGCCCACGGCACTTGGCCACTTTCGGGAGTGTGTGTGCGTGTGTTTGTGTGTGAGTGTGTGTACCGCGGCTTCGTGCTGAATGTTGAAGATGTCCTCCATATCCGCCCAGGGAGTGGTTGAGCGTGCCTCGGCCGAACTATCGAAACGCATCAACGGCCTTGGGCTGCGGTCGAAGCACCATCATGGCAGTGGCGGTGGTGGCGGCGGCGGCGGTGGCAAGTCGGGCGAGAAGGCCAGCGTGATGGAGCGCGTCACGAACGTGCTGTGCGGTGGCAGCAGCTCCAGCAACTCCAGCAACGCCGCCAATCTCTCCATCCAAACCGCCGGCCAGTCACAGTCGGGCGGTGGTGGAGGCATCACTGGCGGAAGGTTGGTTGGTGGTGGCCACGCTCCCGAGAAACCGTCCCGTGTGTCCAACACAACCGGGGGAAGGTAACAGTGCGGGCGGCAAGGGCTCGATGCTTGGCATGGGCG                                                          ]
[+] EMBL BM634053             [                                                                                                            ccgGCATTGGTTTGGGTGAAACGTGAAAAAAAGAAAAAGGCTCCGATCAACGGAAAAGTGGTGACCGAGTGACCCCCGGTGCGAGTGTGTTTGTGTGTGCCTACGCAAAAGTGGCCCACGGCACTTGGCCACTTTCGGGAGTGTGTGTGCGTGTGTTTGTGTGTGAGTGTGTGTACCGCGGCTTCGTGCTGAATGTTGAAGATGTCCTCCATATCCGCCCAGGGAGTGGTTGAGCGTGCCTCGGCCGAACTATCGAAACGCATCAACGGCCTTGGGCTGCGGTCGAAGCACCATCATGGCAGTGGCGGTGGTGGCGGCGGCGGCGGTGGCAAGTCGGGCGAGAAGGCCAGCGTGATGGAGCGCGTCACGAACGTGCTGTGCGGTGGCAGCAGCTCCAGCAACTCCAGCAACGCCGCCAATCTCTCCATCCAAACCGCCGGCCAGTCACAGTCGGGCGGTGGTGGAGGCATCACTGGCGG AGG TGG TGGTGGTGGCCACGCTCCCGAGAAACCGTCCCGTGTGTCCAACACAACCGGGGG AGGTAACAGTGCGGGCGGCAAGGGCTCGATGCTTGGCATGGGCGCGGGACCTGGTGGCAAATCGCAGTCCAACACACCGCAGTCGCTGCGCAAGATTGGCCA]


>consensus_4423#1 CCGCGCAAACGCCCGTGACTGTTTATCGTTCGAGCTTCGACTAGAATCCACGGGTGATTG AAGTGAGCTGTGCGTGTGTGGTGCTAGTGTTGGCGTTCTCTATCCCAGCAAGCATTGGTT TGGGTGAAACGTGAAAAAAAGAAAAAGGCTCCGATCAACGGAAAAGTGGTGACCGAGTGA CCCCCGGTGCGAGTGTGTTTGTGTGTGCCTACGCAAAAGTGGCCCACGGCACTTGGCCAC TTTCGGGAGTGTGTGTGCGTGTGTTTGTGTGTGAGTGTGTGTACCGCGGCTTCGTGCTGA ATGTTGAAGATGTCCTCCATATCCGCCCAGGGAGTGGTTGAGCGTGCCTCGGCCGAACTA TCGAAACGCATCAACGGCCTTGGGCTGCGGTCGAAGCACCATCATGGCAGTGGCGGTGGT GGCGGCGGCGGCGGTGGCAAGTCGGGCGAGAAGGCCAGCGTGATGGAGCGCGTCACGAAC GTGCTGTGCGGTGGCAGCAGCTCCAGCAACTCCAGCAACGCCGCCAATCTCTCCATCCAA ACCGCCGGCCAGTCACAGTCGGGCGGTGGTGGAGGCATCACTGGCGGAAGGTTGGTTGGT GGTGGCCACGCTCCCGAGAAACCGTCCCGTGTGTCCAACACAACCGGGGGAAGGTAACAG TGCGGGCGGCAAGGGCTCGATGCTTGGCATGGGCGCGGGACCTGGTGGCAAATCGCAGTC CAACACACCGCAGTCGCTGCGCAAGATTGGCCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4423#0      TCAGGTGTGCACAGCGTCCGTTTAGTAGGGGGTTTTCCGCAAACGCCCGTGACTGTTTAT 60
consensus_4423#1      ----------------------------------CCGCGCAAACGCCCGTGACTGTTTAT 26
                                                           ***********************

consensus_4423#0      CGCCCAGAAGTTCGAGCTTCGACTAGAATCCACGTGTGTGTGAAGTGAGCTGTGGCTGTG 120
consensus_4423#1      CG--------TTCGAGCTTCGACTAGAATCCACGGGTGATTGAAGTGAGCTGTGCGTGTG 78
                      **        ************************ ***  **************  ****

consensus_4423#0      TGGTGCTAGTGTTGGCGTTCTCTATCCCAGCAAGCATTGGTTTGGGTGAAACGTGAAAAA 180
consensus_4423#1      TGGTGCTAGTGTTGGCGTTCTCTATCCCAGCAAGCATTGGTTTGGGTGAAACGTGAAAAA 138
                      ************************************************************

consensus_4423#0      AGAAAAAAGGCTCCGATCAACGGAAAAGTGGTGACCGAGTGACCCCCGGTGCGAGTGTGT 240
consensus_4423#1      AAGAAAAAGGCTCCGATCAACGGAAAAGTGGTGACCGAGTGACCCCCGGTGCGAGTGTGT 198
                      *  *********************************************************

consensus_4423#0      TTGTGTGTGCCTACGCAAAAGTGGCCCACCG-ACTTGGCCACTTTCGGGTGTGTGTGTGT 299
consensus_4423#1      TTGTGTGTGCCTACGCAAAAGTGGCCCACGGCACTTGGCCACTTTCGGGAGTGTGTGTGC 258
                      ***************************** * ***************** ********* 

consensus_4423#0      GTGCGAGTGTTTGTGTGTGAGTGTGTGTGTGTACCGCGGCTTCGTGCTGAAGTGTTGAAG 359
consensus_4423#1      GTG----TGTTTGTGTGTGAGTGTGTG----TACCGCGGCTTCGTGCTGAA-TGTTGAAG 309
                      ***    ********************    ******************** ********

consensus_4423#0      ATGTCCTCCATATTCGCTCAGGGGAGTGGTTGAGCGTGCCACGGCCGAACTATCGAAACG 419
consensus_4423#1      ATGTCCTCCATATCCGCCCAGGG-AGTGGTTGAGCGTGCCTCGGCCGAACTATCGAAACG 368
                      ************* *** ***** **************** *******************

consensus_4423#0      CATCAACGGCCTTGGCTGCCGGTCGAAGCACCATGCATGGCAGTGGCGGTGGTGGTGGCG 479
consensus_4423#1      CATCAACGGCCTTGGGCTGCGGTCGAAGCACCAT-CATGGCAGTGGCGGTGGTGGCGGCG 427
                      ***************    *************** ******************** ****

consensus_4423#0      GTGGCGGTGGCAAATCGGGCGAGAAGGCCAGCGTGATGGAGCGCGTCACGAACGTGCTGT 539
consensus_4423#1      GCGGCGGTGGCAAGTCGGGCGAGAAGGCCAGCGTGATGGAGCGCGTCACGAACGTGCTGT 487
                      * *********** **********************************************

consensus_4423#0      GCGGTGGCAGCAGCTCCAGCAAGCTCCAGCAACGCCGGCCAATCTCACCATNNNTTCTAC 599
consensus_4423#1      GCGGTGGCAGCAGCTCCAGCAA-CTCCAGCAACGCCG-CCAATCTCTCCATCCAAAC--C 543
                      ********************** ************** ******** ****     *  *

consensus_4423#0      GTTAATTAGACAGGGGAGCGAGGACGGTGGTGGAACATTCAGTTAGTTTCTTTCTTTTTA 659
consensus_4423#1      GCCGGCCAGTCACAGTC----GGGCGGTGGTGGAGGCATCACTGGCGGAAGGTTGGTTGG 599
                      *      ** **  *      ** **********    *** *         *   **  

consensus_4423#0      TGTGAGCTTCTTTGCTCTTCTTTTTAACGCAATTTATAAGGCACAGCTGCCAGCTAATGC 719
consensus_4423#1      TGGTGGCCACGCT--CCCGAGAAACCGTCCCGTGTGTCCAACACAACCGGGGGAAGGTA- 656
                      **   **  *  *   *            *  * * *    **** * *   *    *  

consensus_4423#0      GTAGTTTACAACACTATTTTTTACTTACCTTTTTTACACGCATACTTTCGTGGCTTGTAA 779
consensus_4423#1      ACAGTGCG-GGCGGCAAGGGCTCGATGCTTGGCATGGGCGCGGGACCTGGTGGCAAATCG 715
                        ***      *   *     *   * * *    *   ***      * *****   *  

consensus_4423#0      CGGAACAGTCACTTTGGCCATCGACTCCACAATGCAGGAGAGAGGAAACTATTGTATGGC 839
consensus_4423#1      CAGTCCAA-CACACCG--CAGTCGCTGCGCAAGATTGGCCA------------------- 753
                      * *  **  ***   *  **    ** * ***    **  *                   

consensus_4423#0      AACCACGATACTTACTGATTGGTTTTTAAGTGTACAGCCCTGATCTCACTTGTTAAATGC 899
consensus_4423#1      ------------------------------------------------------------
                                                                                  

consensus_4423#0      CCCCTCGAGCAAGGAAACTCAAAATTAATGTTAACTTAAAACAGGACAGCAAAAAAATGG 959
consensus_4423#1      ------------------------------------------------------------
                                                                                  

consensus_4423#0      GTAGATATGAAAAGGGCAACAAAGGGAAAGAGTAAGCCTGCAATTGCTAAAACAAAACAA 1019
consensus_4423#1      ------------------------------------------------------------
                                                                                  

consensus_4423#0      AACAAAAAAGAAAACAAAAATAATCTAATTTTGTCGAATGTTAAATGGCTGTGTAGATAA 1079
consensus_4423#1      ------------------------------------------------------------
                                                                                  

consensus_4423#0      GAGAGTGTATAAAACCCTAATGCAGAAAGAGAAGAAAGAGAAATTGATTGAAAAAAAAAA 1139
consensus_4423#1      ------------------------------------------------------------
                                                                                  

consensus_4423#0      AACAAG 1145
consensus_4423#1      ------
                            




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)