These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4423#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1145 fasta sequence [TCAGGTGTGCACAGCGTCCGTTTAGTAGGGGGTTTTCCGCAAACGCCCGTGACTGTTTATCGCCCAGAAGTTCGAGCTTCGACTAGAATCCACGTGTGTGTGAAGTGAGCTGTGGCTGTGTGGTGCTAGTGTTGGCGTTCTCTATCCCAGCAAGCATTGGTTTGGGTGAAACGTGAAAAAAGAAAAAAGGCTCCGATCAACGGAAAAGTGGTGACCGAGTGACCCCCGGTGCGAGTGTGTTTGTGTGTGCCTACGCAAAAGTGGCCCACCGACTTGGCCACTTTCGGGTGTGTGTGTGTGTGCGAGTGTTTGTGTGTGAGTGTGTGTGTGTACCGCGGCTTCGTGCTGAAGTGTTGAAGATGTCCTCCATATTCGCTCAGGGGAGTGGTTGAGCGTGCCACGGCCGAACTATCGAAACGCATCAACGGCCTTGGCTGCCGGTCGAAGCACCATGCATGGCAGTGGCGGTGGTGGTGGCGGTGGCGGTGGCAAATCGGGCGAGAAGGCCAGCGTGATGGAGCGCGTCACGAACGTGCTGTGCGGTGGCAGCAGCTCCAGCAAGCTCCAGCAACGCCGGCCAATCTCACCATNNNTTCTACGTTAATTAGACAGGGGAGCGAGGACGGTGGTGGAACATTCAGTTAGTTTCTTTCTTTTTATGTGAGCTTCTTTGCTCTTCTTTTTAACGCAATTTATAAGGCACAGCTGCCAGCTAATGCGTAGTTTACAACACTATTTTTTACTTACCTTTTTTACACGCATACTTTCGTGGCTTGTAACGGAACAGTCACTTTGGCCATCGACTCCACAATGCAGGAGAGAGGAAACTATTGTATGGCAACCACGATACTTACTGATTGGTTTTTAAGTGTACAGCCCTGATCTCACTTGTTAAATGCCCCCTCGAGCAAGGAAACTCAAAATTAATGTTAACTTAAAACAGGACAGCAAAAAAATGGGTAGATATGAAAAGGGCAACAAAGGGAAAGAGTAAGCCTGCAATTGCTAAAACAAAACAAAACAAAAAAGAAAACAAAAATAATCTAATTTTGTCGAATGTTAAATGGCTGTGTAGATAAGAGAGTGTATAAAACCCTAATGCAGAAAGAGAAGAAAGAGAAATTGATTGAAAAAAAAAAAACAAG] [+] EMBL AF002237 [TCAGGTGTGCACAGCGTCCGTTTAGTAGGGGGTTTTCCGCAAACGCCCGTGACTGTTTATCGCCCAGAAGTTCGAGCTTCGACTAGAATCCACGTGTGTGTGAAGTGAGCTGTGGCTGTGTGGTGCTAGTGTTGGCGTTCTCTATCCCAGCAAGCATTGGTTTGGGTGAAACGTGAAAAAAGAAAAAAGGCTCCGATCAACGGAAAAGTGGTGACCGAGTGACCCCCGGTGCGAGTGTGTTTGTGTGTGCCTACGCAAAAGTGGCCCACCGACTTGGCCACTTTCGGGTGTGTGTGTGTGTGCGAGTGTTTGTGTGTGAGTGTGTGTGTGTACCGCGGCTTCGTGCTGAAGTGTTGAAGATGTCCTCCATATTCGCTCAGGGGAGTGGTTGAGCGTGCCACGGCCGAACTATCGAAACGCATCAACGGCCTTGGCTGCCGGTCGAAGCACCATGCATGGCAGTGGCGGTGGTGGTGGCGGTGGCGGTGGCAAATCGGGCGAGAAGGCCAGCGTGATGGAGCGCGTCACGAACGTGCTGTGCGGTGGCAGCAGCTCCAGCAAGCTCCAGCAACGCCGGCCAATCTCACCATNNNTTCTACGTTAATTAGACAGGGGAGCGAGGACGGTGGTGGAACATTCAGTTAGTTTCTTTCTTTTTATGTGAGCTTCTTTGCTCTTCTTTTTAACGCAATTTATAAGGCACAGCTGCCAGCTAATGCGTAGTTTACAACACTATTTTTTACTTACCTTTTTTACACGCATACTTTCGTGGCTTGTAACGGAACAGTCACTTTGGCCATCGACTCCACAATGCAGGAGAGAGGAAACTATTGTATGGCAACCACGATACTTACTGATTGGTTTTTAAGTGTACAGCCCTGATCTCACTTGTTAAATGCCCCCTCGAGCAAGGAAACTCAAAATTAATGTTAACTTAAAACAGGACAGCAAAAAAATGGGTAGATATGAAAAGGGCAACAAAGGGAAAGAGTAAGCCTGCAATTGCTAAAACAAAACAAAACAAAAAAGAAAACAAAAATAATCTAATTTTGTCGAATGTTAAATGGCTGTGTAGATAAGAGAGTGTATAAAACCCTAATGCAGAAAGAGAAGAAAGAGAAATTGATTGAAAAAAAAAAAACAAG] consensusID : consensus_4423#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 753 fasta sequence [CCGCGCAAACGCCCGTGACTGTTTATCGTTCGAGCTTCGACTAGAATCCACGGGTGATTGAAGTGAGCTGTGCGTGTGTGGTGCTAGTGTTGGCGTTCTCTATCCCAGCAAGCATTGGTTTGGGTGAAACGTGAAAAAAAGAAAAAGGCTCCGATCAACGGAAAAGTGGTGACCGAGTGACCCCCGGTGCGAGTGTGTTTGTGTGTGCCTACGCAAAAGTGGCCCACGGCACTTGGCCACTTTCGGGAGTGTGTGTGCGTGTGTTTGTGTGTGAGTGTGTGTACCGCGGCTTCGTGCTGAATGTTGAAGATGTCCTCCATATCCGCCCAGGGAGTGGTTGAGCGTGCCTCGGCCGAACTATCGAAACGCATCAACGGCCTTGGGCTGCGGTCGAAGCACCATCATGGCAGTGGCGGTGGTGGCGGCGGCGGCGGTGGCAAGTCGGGCGAGAAGGCCAGCGTGATGGAGCGCGTCACGAACGTGCTGTGCGGTGGCAGCAGCTCCAGCAACTCCAGCAACGCCGCCAATCTCTCCATCCAAACCGCCGGCCAGTCACAGTCGGGCGGTGGTGGAGGCATCACTGGCGGAAGGTTGGTTGGTGGTGGCCACGCTCCCGAGAAACCGTCCCGTGTGTCCAACACAACCGGGGGAAGGTAACAGTGCGGGCGGCAAGGGCTCGATGCTTGGCATGGGCGCGGGACCTGGTGGCAAATCGCAGTCCAACACACCGCAGTCGCTGCGCAAGATTGGCCA] [+] EMBL BM656204 [CCGCGCAAACGCCCGTGACTGTTTATCGTTCGAGCTTCGACTAGAATCCACGGGTGATTGAAGTGAGCTGTGCGTGTGTGGTGCTAGTGTTGGCGTTCTCTATCCCAGCAAGCATTGGTTTGGGTGAAACGTGAAAAAAAGAAAAAGGCTCCGATCAACGGAAAAGTGGTGACCGAGTGACCCCCGGTGCGAGTGTGTTTGTGTGTGCCTACGCAAAAGTGGCCCACGGCACTTGGCCACTTTCGGGAGTGTGTGTGCGTGTGTTTGTGTGTGAGTGTGTGTACCGCGGCTTCGTGCTGAATGTTGAAGATGTCCTCCATATCCGCCCAGGGAGTGGTTGAGCGTGCCTCGGCCGAACTATCGAAACGCATCAACGGCCTTGGGCTGCGGTCGAAGCACCATCATGGCAGTGGCGGTGGTGGCGGCGGCGGCGGTGGCAAGTCGGGCGAGAAGGCCAGCGTGATGGAGCGCGTCACGAACGTGCTGTGCGGTGGCAGCAGCTCCAGCAACTCCAGCAACGCCGCCAATCTCTCCATCCAAACCGCCGGCCAGTCACAGTCGGGCGGTGGTGGAGGCATCACTGGCGGAAGGTTGGTTGGTGGTGGCCACGCTCCCGAGAAACCGTCCCGTGTGTCCAACACAACCGGGGGAAGGTAACAGTGCGGGCGGCAAGGGCTCGATGCTTGGCATGGGCG ] [+] EMBL BM634053 [ ccgGCATTGGTTTGGGTGAAACGTGAAAAAAAGAAAAAGGCTCCGATCAACGGAAAAGTGGTGACCGAGTGACCCCCGGTGCGAGTGTGTTTGTGTGTGCCTACGCAAAAGTGGCCCACGGCACTTGGCCACTTTCGGGAGTGTGTGTGCGTGTGTTTGTGTGTGAGTGTGTGTACCGCGGCTTCGTGCTGAATGTTGAAGATGTCCTCCATATCCGCCCAGGGAGTGGTTGAGCGTGCCTCGGCCGAACTATCGAAACGCATCAACGGCCTTGGGCTGCGGTCGAAGCACCATCATGGCAGTGGCGGTGGTGGCGGCGGCGGCGGTGGCAAGTCGGGCGAGAAGGCCAGCGTGATGGAGCGCGTCACGAACGTGCTGTGCGGTGGCAGCAGCTCCAGCAACTCCAGCAACGCCGCCAATCTCTCCATCCAAACCGCCGGCCAGTCACAGTCGGGCGGTGGTGGAGGCATCACTGGCGG AGG TGG TGGTGGTGGCCACGCTCCCGAGAAACCGTCCCGTGTGTCCAACACAACCGGGGG AGGTAACAGTGCGGGCGGCAAGGGCTCGATGCTTGGCATGGGCGCGGGACCTGGTGGCAAATCGCAGTCCAACACACCGCAGTCGCTGCGCAAGATTGGCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4423#0 TCAGGTGTGCACAGCGTCCGTTTAGTAGGGGGTTTTCCGCAAACGCCCGTGACTGTTTAT 60 consensus_4423#1 ----------------------------------CCGCGCAAACGCCCGTGACTGTTTAT 26 *********************** consensus_4423#0 CGCCCAGAAGTTCGAGCTTCGACTAGAATCCACGTGTGTGTGAAGTGAGCTGTGGCTGTG 120 consensus_4423#1 CG--------TTCGAGCTTCGACTAGAATCCACGGGTGATTGAAGTGAGCTGTGCGTGTG 78 ** ************************ *** ************** **** consensus_4423#0 TGGTGCTAGTGTTGGCGTTCTCTATCCCAGCAAGCATTGGTTTGGGTGAAACGTGAAAAA 180 consensus_4423#1 TGGTGCTAGTGTTGGCGTTCTCTATCCCAGCAAGCATTGGTTTGGGTGAAACGTGAAAAA 138 ************************************************************ consensus_4423#0 AGAAAAAAGGCTCCGATCAACGGAAAAGTGGTGACCGAGTGACCCCCGGTGCGAGTGTGT 240 consensus_4423#1 AAGAAAAAGGCTCCGATCAACGGAAAAGTGGTGACCGAGTGACCCCCGGTGCGAGTGTGT 198 * ********************************************************* consensus_4423#0 TTGTGTGTGCCTACGCAAAAGTGGCCCACCG-ACTTGGCCACTTTCGGGTGTGTGTGTGT 299 consensus_4423#1 TTGTGTGTGCCTACGCAAAAGTGGCCCACGGCACTTGGCCACTTTCGGGAGTGTGTGTGC 258 ***************************** * ***************** ********* consensus_4423#0 GTGCGAGTGTTTGTGTGTGAGTGTGTGTGTGTACCGCGGCTTCGTGCTGAAGTGTTGAAG 359 consensus_4423#1 GTG----TGTTTGTGTGTGAGTGTGTG----TACCGCGGCTTCGTGCTGAA-TGTTGAAG 309 *** ******************** ******************** ******** consensus_4423#0 ATGTCCTCCATATTCGCTCAGGGGAGTGGTTGAGCGTGCCACGGCCGAACTATCGAAACG 419 consensus_4423#1 ATGTCCTCCATATCCGCCCAGGG-AGTGGTTGAGCGTGCCTCGGCCGAACTATCGAAACG 368 ************* *** ***** **************** ******************* consensus_4423#0 CATCAACGGCCTTGGCTGCCGGTCGAAGCACCATGCATGGCAGTGGCGGTGGTGGTGGCG 479 consensus_4423#1 CATCAACGGCCTTGGGCTGCGGTCGAAGCACCAT-CATGGCAGTGGCGGTGGTGGCGGCG 427 *************** *************** ******************** **** consensus_4423#0 GTGGCGGTGGCAAATCGGGCGAGAAGGCCAGCGTGATGGAGCGCGTCACGAACGTGCTGT 539 consensus_4423#1 GCGGCGGTGGCAAGTCGGGCGAGAAGGCCAGCGTGATGGAGCGCGTCACGAACGTGCTGT 487 * *********** ********************************************** consensus_4423#0 GCGGTGGCAGCAGCTCCAGCAAGCTCCAGCAACGCCGGCCAATCTCACCATNNNTTCTAC 599 consensus_4423#1 GCGGTGGCAGCAGCTCCAGCAA-CTCCAGCAACGCCG-CCAATCTCTCCATCCAAAC--C 543 ********************** ************** ******** **** * * consensus_4423#0 GTTAATTAGACAGGGGAGCGAGGACGGTGGTGGAACATTCAGTTAGTTTCTTTCTTTTTA 659 consensus_4423#1 GCCGGCCAGTCACAGTC----GGGCGGTGGTGGAGGCATCACTGGCGGAAGGTTGGTTGG 599 * ** ** * ** ********** *** * * ** consensus_4423#0 TGTGAGCTTCTTTGCTCTTCTTTTTAACGCAATTTATAAGGCACAGCTGCCAGCTAATGC 719 consensus_4423#1 TGGTGGCCACGCT--CCCGAGAAACCGTCCCGTGTGTCCAACACAACCGGGGGAAGGTA- 656 ** ** * * * * * * * **** * * * * consensus_4423#0 GTAGTTTACAACACTATTTTTTACTTACCTTTTTTACACGCATACTTTCGTGGCTTGTAA 779 consensus_4423#1 ACAGTGCG-GGCGGCAAGGGCTCGATGCTTGGCATGGGCGCGGGACCTGGTGGCAAATCG 715 *** * * * * * * * *** * ***** * consensus_4423#0 CGGAACAGTCACTTTGGCCATCGACTCCACAATGCAGGAGAGAGGAAACTATTGTATGGC 839 consensus_4423#1 CAGTCCAA-CACACCG--CAGTCGCTGCGCAAGATTGGCCA------------------- 753 * * ** *** * ** ** * *** ** * consensus_4423#0 AACCACGATACTTACTGATTGGTTTTTAAGTGTACAGCCCTGATCTCACTTGTTAAATGC 899 consensus_4423#1 ------------------------------------------------------------ consensus_4423#0 CCCCTCGAGCAAGGAAACTCAAAATTAATGTTAACTTAAAACAGGACAGCAAAAAAATGG 959 consensus_4423#1 ------------------------------------------------------------ consensus_4423#0 GTAGATATGAAAAGGGCAACAAAGGGAAAGAGTAAGCCTGCAATTGCTAAAACAAAACAA 1019 consensus_4423#1 ------------------------------------------------------------ consensus_4423#0 AACAAAAAAGAAAACAAAAATAATCTAATTTTGTCGAATGTTAAATGGCTGTGTAGATAA 1079 consensus_4423#1 ------------------------------------------------------------ consensus_4423#0 GAGAGTGTATAAAACCCTAATGCAGAAAGAGAAGAAAGAGAAATTGATTGAAAAAAAAAA 1139 consensus_4423#1 ------------------------------------------------------------ consensus_4423#0 AACAAG 1145 consensus_4423#1 ------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||