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Anopheles gambiae
cluster # 4474 cluster # 4474       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4474#0 length = 501 sequences # 1  
consensus_4474#1 length = 496 sequences # 2  

consensusID : consensus_4474#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 501
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGGTTCGATCTGCGCTACCGCTGCGTTGGAGGATTTGTCTTCTGGCTGCTTAAATTTTTCAGCCGTTCCAGTGTGTGTTTGTGTGTTTATTATCCAGCAGGATAAATTATTGGTGAACAGAAAAAAGGTGAAAAATAGTGTTGCAAAGCGCTTGAACAGTGAACTTTGACTTTCCAGAAAGTCCGAAACTCCTTATCGGTGGCATCTTTGAGCCGGAGCAGCAAGAATCAACCCAACAGCGAACCTCATCGTGCGAAGATGAACATTCTGGTAATATCGTTTCTGGCGGTGGTGTCGCTGACAACCTTCCCGGCCGGCACGTACGGTACGCCGGCCGCTAGCAGTGGCGCGCACGATCCGAAGAAATCGGTCGCCGCCGCCGAAGCCGCCCTGCCGGTCAACGACAACGGGCTGAAGGAGATCTGGCAGGAGGACGACCGGGAGGTGCTGATCCGCAACGAGCGCGGCACCAAGAA]

[+] EMBL BM627573             [CCGCCCACGCGTCCGCCCACGCGTCCGGTTCGATCTGCGCTACCGCTGCGTTGGAGGATTTGTCTTCTGGCTGCTTAAATTTTTCAGCCGTTCCAGTGTGTGTTTGTGTGTTTATTATCCAGCAGGATAAATTATTGGTGAACAGAAAAAAGGTGAAAAATAGTGTTGCAAAGCGCTTGAACAGTGAACTTTGACTTTCCAGAAAGTCCGAAACTCCTTATCGGTGGCATCTTTGAGCCGGAGCAGCAAGAATCAACCCAACAGCGAACCTCATCGTGCGAAGATGAACATTCTGGTAATATCGTTTCTGGCGGTGGTGTCGCTGACAACCTTCCCGGCCGGCACGTACGGTACGCCGGCCGCTAGCAGTGGCGCGCACGATCCGAAGAAATCGGTCGCCGCCGCCGAAGCCGCCCTGCCGGTCAACGACAACGGGCTGAAGGAGATCTGGCAGGAGGACGACCGGGAGGTGCTGATCCGCAACGAGCGCGGCACCAAGAA]


>consensus_4474#0 CCGCCCACGCGTCCGCCCACGCGTCCGGTTCGATCTGCGCTACCGCTGCGTTGGAGGATT TGTCTTCTGGCTGCTTAAATTTTTCAGCCGTTCCAGTGTGTGTTTGTGTGTTTATTATCC AGCAGGATAAATTATTGGTGAACAGAAAAAAGGTGAAAAATAGTGTTGCAAAGCGCTTGA ACAGTGAACTTTGACTTTCCAGAAAGTCCGAAACTCCTTATCGGTGGCATCTTTGAGCCG GAGCAGCAAGAATCAACCCAACAGCGAACCTCATCGTGCGAAGATGAACATTCTGGTAAT ATCGTTTCTGGCGGTGGTGTCGCTGACAACCTTCCCGGCCGGCACGTACGGTACGCCGGC CGCTAGCAGTGGCGCGCACGATCCGAAGAAATCGGTCGCCGCCGCCGAAGCCGCCCTGCC GGTCAACGACAACGGGCTGAAGGAGATCTGGCAGGAGGACGACCGGGAGGTGCTGATCCG CAACGAGCGCGGCACCAAGAA



consensusID : consensus_4474#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 496
fasta sequence
                              [CCGGTTTTCGTCCTGTTCGTTGGTTCGATCTGCGCTACCGCTGCGTTGGAGGATTTGTCTT-GTGGCTGCTTAAATTTTTCAGCCGTTCCAGTGTGTGTGTGTGTGTTTATTATCCAGCAGGATAAATTATTGGTGAACAGAAAAAAGGTGAAAAACAGTGTTGCGAAGCGCTTGAACAGTGAACTTTGACTTTCCAGAAAGTCCGAAACTCCTTATCGGTGGCATCTTTGAGCCGGAGCAGCAAGAATCAACCCAACAGCGAACCTCATCGTGCGAAGATGAACATTCTGGTAATATCGTTTCTGGCGGTGGTGTCGCTGACAACCTTCCCGGCCGGCACGTACGGTACGCCGGCCGCTAGCAGTGGCGCGCACGATCCGAAGAAATCGGTCGCCGCCGCCGAAGCCGCCCTGCCGGTCAACGACAACGGGCTGAAGGAGATCTGGCAGGAGGACGACCGAGAGGTGCTGATCCGCAACGAGCGTGGCACCAAGAA]

[+] EMBL BM645898             [CCGGTTTTCGTCCTGTTCGTTGGTTCGATCTGCGCTACCGCTGCGTTGGAGGATTTGTCTT GTGGCTGCTTAAATTTTTCAGCCGTTCCAGTGTGTGTGTGTGTGTTTATTATCCAGCAGGATAAATTATTGGTGAACAGAAAAAAGGTGAAAAACAGTGTTGCGAAGCGCTTGAACAGTGAACTTTGACTTTCCAGAAAGTCCGAAACTCCTTATCGGTGGCATCTTTGAGCCGGAGCAGCAAGAATCAACCCAACAGCGAACCTCATCGTGCGAAGATGAACATTCTGGTAATATCGTTTCTGGCGGTGGTGTCGCTGACAACCTTCCCGGCCGGCACGTACGGTACGCCGGCCGCTAGCAGTGGCGCGCACGATCCGAAGAAATCGGTCGCCGCCGCCGAAGCCGCCCTGCCGGTCAACGACAACGGGCTGAAGGAGATCTGGCAGGAGGACGACCGAGAGGTGCTGATCCGCAACGAGCGTGGCACCAAGAA]
[+] EMBL AL933467             [                                           ccagGGAAGATTTGTCTTGGTGGCTGCTTAA   TTTCAGCCGTTCCAGTGTGTGTGTGTGTGTTTATTATCCAGCAGGATAAATTATTGGTGAACAGAAAAAAGGTGAAAAACAGTGTTGCGAAGCGCTTGAACAGTGAACTTTGACTTTCCAGAAAGTCCGAAACTCCTTATCGGTGGCATCTTTGAGCCGGAGCAGCAAGAATCAACCCAACAGCGAACCTCATCGTGCGAAGATGAACATTCTGGTAATATCGTTTCTGGCGGTGGTGTCGCTGACAACCTTCCCGGCCGGCACGTACGGTACGCCGGCCGCTAGCAGTGGCGCGCACGATCCGAAGAAATCGGTCGCCGCCGCCGAAGCCGCCCTGCCGGTCAACGACAACGGGCTGAAGGAGATCTGGCAGGAGGACGACCGAGAGGTGCTGATCCGCAACG                ]


>consensus_4474#1 CCGGTTTTCGTCCTGTTCGTTGGTTCGATCTGCGCTACCGCTGCGTTGGAGGATTTGTCT TGTGGCTGCTTAAATTTTTCAGCCGTTCCAGTGTGTGTGTGTGTGTTTATTATCCAGCAG GATAAATTATTGGTGAACAGAAAAAAGGTGAAAAACAGTGTTGCGAAGCGCTTGAACAGT GAACTTTGACTTTCCAGAAAGTCCGAAACTCCTTATCGGTGGCATCTTTGAGCCGGAGCA GCAAGAATCAACCCAACAGCGAACCTCATCGTGCGAAGATGAACATTCTGGTAATATCGT TTCTGGCGGTGGTGTCGCTGACAACCTTCCCGGCCGGCACGTACGGTACGCCGGCCGCTA GCAGTGGCGCGCACGATCCGAAGAAATCGGTCGCCGCCGCCGAAGCCGCCCTGCCGGTCA ACGACAACGGGCTGAAGGAGATCTGGCAGGAGGACGACCGAGAGGTGCTGATCCGCAACG AGCGTGGCACCAAGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4474#0      CCGCCCACGCGTCCGCCCACGCGTCCGGTTCGATCTGCGCTACCGCTGCGTTGGAGGATT 60
consensus_4474#1      ----CCGGTTTTCGTCCTGTTCGTT-GGTTCGATCTGCGCTACCGCTGCGTTGGAGGATT 55
                          **     **  **    ***  **********************************

consensus_4474#0      TGTCTTCTGGCTGCTTAAATTTTTCAGCCGTTCCAGTGTGTGTTTGTGTGTTTATTATCC 120
consensus_4474#1      TGTCTTGTGGCTGCTTAAATTTTTCAGCCGTTCCAGTGTGTGTGTGTGTGTTTATTATCC 115
                      ****** ************************************ ****************

consensus_4474#0      AGCAGGATAAATTATTGGTGAACAGAAAAAAGGTGAAAAATAGTGTTGCAAAGCGCTTGA 180
consensus_4474#1      AGCAGGATAAATTATTGGTGAACAGAAAAAAGGTGAAAAACAGTGTTGCGAAGCGCTTGA 175
                      **************************************** ******** **********

consensus_4474#0      ACAGTGAACTTTGACTTTCCAGAAAGTCCGAAACTCCTTATCGGTGGCATCTTTGAGCCG 240
consensus_4474#1      ACAGTGAACTTTGACTTTCCAGAAAGTCCGAAACTCCTTATCGGTGGCATCTTTGAGCCG 235
                      ************************************************************

consensus_4474#0      GAGCAGCAAGAATCAACCCAACAGCGAACCTCATCGTGCGAAGATGAACATTCTGGTAAT 300
consensus_4474#1      GAGCAGCAAGAATCAACCCAACAGCGAACCTCATCGTGCGAAGATGAACATTCTGGTAAT 295
                      ************************************************************

consensus_4474#0      ATCGTTTCTGGCGGTGGTGTCGCTGACAACCTTCCCGGCCGGCACGTACGGTACGCCGGC 360
consensus_4474#1      ATCGTTTCTGGCGGTGGTGTCGCTGACAACCTTCCCGGCCGGCACGTACGGTACGCCGGC 355
                      ************************************************************

consensus_4474#0      CGCTAGCAGTGGCGCGCACGATCCGAAGAAATCGGTCGCCGCCGCCGAAGCCGCCCTGCC 420
consensus_4474#1      CGCTAGCAGTGGCGCGCACGATCCGAAGAAATCGGTCGCCGCCGCCGAAGCCGCCCTGCC 415
                      ************************************************************

consensus_4474#0      GGTCAACGACAACGGGCTGAAGGAGATCTGGCAGGAGGACGACCGGGAGGTGCTGATCCG 480
consensus_4474#1      GGTCAACGACAACGGGCTGAAGGAGATCTGGCAGGAGGACGACCGAGAGGTGCTGATCCG 475
                      ********************************************* **************

consensus_4474#0      CAACGAGCGCGGCACCAAGAA 501
consensus_4474#1      CAACGAGCGTGGCACCAAGAA 496
                      ********* ***********




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)