These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4474#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 501 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGTTCGATCTGCGCTACCGCTGCGTTGGAGGATTTGTCTTCTGGCTGCTTAAATTTTTCAGCCGTTCCAGTGTGTGTTTGTGTGTTTATTATCCAGCAGGATAAATTATTGGTGAACAGAAAAAAGGTGAAAAATAGTGTTGCAAAGCGCTTGAACAGTGAACTTTGACTTTCCAGAAAGTCCGAAACTCCTTATCGGTGGCATCTTTGAGCCGGAGCAGCAAGAATCAACCCAACAGCGAACCTCATCGTGCGAAGATGAACATTCTGGTAATATCGTTTCTGGCGGTGGTGTCGCTGACAACCTTCCCGGCCGGCACGTACGGTACGCCGGCCGCTAGCAGTGGCGCGCACGATCCGAAGAAATCGGTCGCCGCCGCCGAAGCCGCCCTGCCGGTCAACGACAACGGGCTGAAGGAGATCTGGCAGGAGGACGACCGGGAGGTGCTGATCCGCAACGAGCGCGGCACCAAGAA] [+] EMBL BM627573 [CCGCCCACGCGTCCGCCCACGCGTCCGGTTCGATCTGCGCTACCGCTGCGTTGGAGGATTTGTCTTCTGGCTGCTTAAATTTTTCAGCCGTTCCAGTGTGTGTTTGTGTGTTTATTATCCAGCAGGATAAATTATTGGTGAACAGAAAAAAGGTGAAAAATAGTGTTGCAAAGCGCTTGAACAGTGAACTTTGACTTTCCAGAAAGTCCGAAACTCCTTATCGGTGGCATCTTTGAGCCGGAGCAGCAAGAATCAACCCAACAGCGAACCTCATCGTGCGAAGATGAACATTCTGGTAATATCGTTTCTGGCGGTGGTGTCGCTGACAACCTTCCCGGCCGGCACGTACGGTACGCCGGCCGCTAGCAGTGGCGCGCACGATCCGAAGAAATCGGTCGCCGCCGCCGAAGCCGCCCTGCCGGTCAACGACAACGGGCTGAAGGAGATCTGGCAGGAGGACGACCGGGAGGTGCTGATCCGCAACGAGCGCGGCACCAAGAA] consensusID : consensus_4474#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 496 fasta sequence [CCGGTTTTCGTCCTGTTCGTTGGTTCGATCTGCGCTACCGCTGCGTTGGAGGATTTGTCTT-GTGGCTGCTTAAATTTTTCAGCCGTTCCAGTGTGTGTGTGTGTGTTTATTATCCAGCAGGATAAATTATTGGTGAACAGAAAAAAGGTGAAAAACAGTGTTGCGAAGCGCTTGAACAGTGAACTTTGACTTTCCAGAAAGTCCGAAACTCCTTATCGGTGGCATCTTTGAGCCGGAGCAGCAAGAATCAACCCAACAGCGAACCTCATCGTGCGAAGATGAACATTCTGGTAATATCGTTTCTGGCGGTGGTGTCGCTGACAACCTTCCCGGCCGGCACGTACGGTACGCCGGCCGCTAGCAGTGGCGCGCACGATCCGAAGAAATCGGTCGCCGCCGCCGAAGCCGCCCTGCCGGTCAACGACAACGGGCTGAAGGAGATCTGGCAGGAGGACGACCGAGAGGTGCTGATCCGCAACGAGCGTGGCACCAAGAA] [+] EMBL BM645898 [CCGGTTTTCGTCCTGTTCGTTGGTTCGATCTGCGCTACCGCTGCGTTGGAGGATTTGTCTT GTGGCTGCTTAAATTTTTCAGCCGTTCCAGTGTGTGTGTGTGTGTTTATTATCCAGCAGGATAAATTATTGGTGAACAGAAAAAAGGTGAAAAACAGTGTTGCGAAGCGCTTGAACAGTGAACTTTGACTTTCCAGAAAGTCCGAAACTCCTTATCGGTGGCATCTTTGAGCCGGAGCAGCAAGAATCAACCCAACAGCGAACCTCATCGTGCGAAGATGAACATTCTGGTAATATCGTTTCTGGCGGTGGTGTCGCTGACAACCTTCCCGGCCGGCACGTACGGTACGCCGGCCGCTAGCAGTGGCGCGCACGATCCGAAGAAATCGGTCGCCGCCGCCGAAGCCGCCCTGCCGGTCAACGACAACGGGCTGAAGGAGATCTGGCAGGAGGACGACCGAGAGGTGCTGATCCGCAACGAGCGTGGCACCAAGAA] [+] EMBL AL933467 [ ccagGGAAGATTTGTCTTGGTGGCTGCTTAA TTTCAGCCGTTCCAGTGTGTGTGTGTGTGTTTATTATCCAGCAGGATAAATTATTGGTGAACAGAAAAAAGGTGAAAAACAGTGTTGCGAAGCGCTTGAACAGTGAACTTTGACTTTCCAGAAAGTCCGAAACTCCTTATCGGTGGCATCTTTGAGCCGGAGCAGCAAGAATCAACCCAACAGCGAACCTCATCGTGCGAAGATGAACATTCTGGTAATATCGTTTCTGGCGGTGGTGTCGCTGACAACCTTCCCGGCCGGCACGTACGGTACGCCGGCCGCTAGCAGTGGCGCGCACGATCCGAAGAAATCGGTCGCCGCCGCCGAAGCCGCCCTGCCGGTCAACGACAACGGGCTGAAGGAGATCTGGCAGGAGGACGACCGAGAGGTGCTGATCCGCAACG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4474#0 CCGCCCACGCGTCCGCCCACGCGTCCGGTTCGATCTGCGCTACCGCTGCGTTGGAGGATT 60 consensus_4474#1 ----CCGGTTTTCGTCCTGTTCGTT-GGTTCGATCTGCGCTACCGCTGCGTTGGAGGATT 55 ** ** ** *** ********************************** consensus_4474#0 TGTCTTCTGGCTGCTTAAATTTTTCAGCCGTTCCAGTGTGTGTTTGTGTGTTTATTATCC 120 consensus_4474#1 TGTCTTGTGGCTGCTTAAATTTTTCAGCCGTTCCAGTGTGTGTGTGTGTGTTTATTATCC 115 ****** ************************************ **************** consensus_4474#0 AGCAGGATAAATTATTGGTGAACAGAAAAAAGGTGAAAAATAGTGTTGCAAAGCGCTTGA 180 consensus_4474#1 AGCAGGATAAATTATTGGTGAACAGAAAAAAGGTGAAAAACAGTGTTGCGAAGCGCTTGA 175 **************************************** ******** ********** consensus_4474#0 ACAGTGAACTTTGACTTTCCAGAAAGTCCGAAACTCCTTATCGGTGGCATCTTTGAGCCG 240 consensus_4474#1 ACAGTGAACTTTGACTTTCCAGAAAGTCCGAAACTCCTTATCGGTGGCATCTTTGAGCCG 235 ************************************************************ consensus_4474#0 GAGCAGCAAGAATCAACCCAACAGCGAACCTCATCGTGCGAAGATGAACATTCTGGTAAT 300 consensus_4474#1 GAGCAGCAAGAATCAACCCAACAGCGAACCTCATCGTGCGAAGATGAACATTCTGGTAAT 295 ************************************************************ consensus_4474#0 ATCGTTTCTGGCGGTGGTGTCGCTGACAACCTTCCCGGCCGGCACGTACGGTACGCCGGC 360 consensus_4474#1 ATCGTTTCTGGCGGTGGTGTCGCTGACAACCTTCCCGGCCGGCACGTACGGTACGCCGGC 355 ************************************************************ consensus_4474#0 CGCTAGCAGTGGCGCGCACGATCCGAAGAAATCGGTCGCCGCCGCCGAAGCCGCCCTGCC 420 consensus_4474#1 CGCTAGCAGTGGCGCGCACGATCCGAAGAAATCGGTCGCCGCCGCCGAAGCCGCCCTGCC 415 ************************************************************ consensus_4474#0 GGTCAACGACAACGGGCTGAAGGAGATCTGGCAGGAGGACGACCGGGAGGTGCTGATCCG 480 consensus_4474#1 GGTCAACGACAACGGGCTGAAGGAGATCTGGCAGGAGGACGACCGAGAGGTGCTGATCCG 475 ********************************************* ************** consensus_4474#0 CAACGAGCGCGGCACCAAGAA 501 consensus_4474#1 CAACGAGCGTGGCACCAAGAA 496 ********* *********** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||