These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4494#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 679 fasta sequence [CCGCCCACGCGTCCGGGCGATGTACACAAACCGTGTCGTTCGCTGCTCGAAAACAAATCCATTTTTCACAGTGTTGTCGCGCAATTTCGGTAACAATTCTAGTGCCCGCAAATGGTACCAACATCCAACCGTGCGGTACATTTGTTTGGTGAGCGGTGGACTGCTCGCGTTCACCGCAGCGACCTACCGAAATCGACCGAAGGTTTACGCGCTCCAGCTGCGAAAGGATGAAATTGCGGACAAGGCCATTAAGCTTACAGCGCGCGAGCGGCGCTTCATCAAGTTCGCCTCGGTCGAGTTCGATGGGCAGATCTACATGACACCACAAGACTTTCTGGAGTCGGTCGTCGAACAGGAGCCCCGACCACGGCTCAAACGGAAGTCATTAACGCACGCCGAGATTCAGCAGCTGAAAGATTACACGCCACCGTTGAAGCACGGTTCGTCGCAGCTTTTCCGCAGCCTTCGGGACAAAGGAATAATTTCGTACACCGAGTATCTGTTTCTTCTATCGGTGCTCACAAAGCCTCACTCTGGCTTCCGCATTGCCTTTAACATGTTCGACACGGACGGAAATCAACGC-GTGGATAAGGACGAATTTCTTGTGATTCGACAGCTGCTCGGAGGATCGCTGAAGGATCGTGATCTAGACGAGGCCACTCGTCAAGCTCTCCTGCAC] [+] EMBL BM643444 [CCGCCCACGCGTCCGGGCGATGTACACAAACCGTGTCGTTCGCTGCTCGAAAACAAATCCATTTTTCACAGTGTTGTCGCGCAATTTCGGTAACAATTCTAGTGCCCGCAAATGGTACCAACATCCAACCGTGCGGTACATTTGTTTGGTGAGCGGTGGACTGCTCGCGTTCACCGCAGCGACCTACCGAAATCGACCGAAGGTTTACGCGCTCCAGCTGCGAAAGGATGAAATTGCGGACAAGGCCATTAAGCTTACAGCGCGCGAGCGGCGCTTCATCAAGTTCGCCTCGGTCGAGTTCGATGGGCAGATCTACATGACACCACAAGACTTTCTGGAGTCGGTCGTCGAACAGGAGCCCCGACCACGGCTCAAACGGAAGTCATTAACGCACGCCGAGATTCAGCAGCTGAAAGATTACACGCCACCGTTGAAGCACGGTTCGTCGCAGCTTTTCCGCAGCCTTCGGGACAAAGGAATAATTTCGTACACCGAGTATCTGTTTCTTCTATCGGTGCTCACAAAGCCTCACTCTGGCTTCCGCATTGCCTTTAACATGTTCGACACGGACGGAAATCAACGC GTGGATAAGGACGAATTTCTTGTGATTCGACAGCTGCTCGGAGGATCGCTGAAGGATCGTGATCTAGACGAGGCCACTCGTCAAGCTCTCCTGCAC] [+] EMBL BM591435 [ ccgaatGGCGATGTACACAAACCGTGTCGTTCGCTGGTCGAAAACAAATCCATTTTTCACAGTGTTGTCGCGCAATTTCGCTAACAATTCTAGTGCCCGCAAATGGTACCAACATCCAACCGTGCGGTACATTTGTTTGGTGAGCGGTGGACTGCTCGCGTTCACCGCAGCGACCTACCGAAATCGACCGAAGGTTTACGCGCTCCAGCTGCGAAAGGATGAAATTGCGGACAAGGCCATTAAGCTTACAGCGCGCGAGCGGCGCTTCATCAAGTTCGCCTCGGTCGAGTTCGATGGGCAGATCTACATGACACCACAAGACTTTCTGGAGTCGGTCGTCGAACAGGAGCCCCGACCACGGCTCAAACGGAAGTCATTAACGCACGCCGAGATTCAGCAGCTGAAAGATTACACGCCACCGTTGAAGCACGGTTCGTCGCAGCTTTTCCGCAGCCTTCGGGACAAAGGAATAATTTCGTACACCGAGTATCTGTTTCTTCTATCGGTGCTCACAAAGCCTCACTCTGGCTTCCGCATTGCCTTTAACATGTTCGACACGGACGGAAATCAACGCGGTGGATAAGGACGAATTTCTTGTGAT ] consensusID : consensus_4494#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence [CCGTGGCGATGTACACAAACCGTGTCGTTCGCTGCTCGAAAACAAATCCATTTTTCACAGTGTTGTCGCGCAATTTCGGTAACAATTCTAGTGCCCGCAAATGGTACCAACATCCAACCGTGCGGTACATTTGTTTGGTGAGCGGTGGACTGCTCGCGTTCACCGCAGCGACCTACCGAAATCGACCGAAGGTTTACGCGCTCCAGCTGCGAAAGGATGAAATTGCGGACAAGGCCATTAAGCTTACAGCGCGCGAGCGGCGCTTCATCAAGTTCGCCTCGGTCGAGTTCGATGGGCAGATCTACATGACACCACAAGACTTTCTGGAGTCGGTTGTCGAACAGGAGCCCCGACCACGGCTCAAACGGAAGTCATTAACGCACGCCGAGATTCAGCAGCTGAAAGATTACACGCCACCGTTGAAGCACGGTTCGTCGCAGCTTTTCCGCAGCCTTCGGGACAAAGGAATAATTTCGTACACCGAGTATCTGTTTCTTCTATCGGTGCTCACAAAGCCTCACTCTGGCTTCCGCATTGCCTTTAACATGTTCGACACGGACGGAAATCAACGCGTGGATAAGGACGAATTTCTTGTGATGGAAAAAATTTT] [+] EMBL BM656456 [CCGTGGCGATGTACACAAACCGTGTCGTTCGCTGCTCGAAAACAAATCCATTTTTCACAGTGTTGTCGCGCAATTTCGGTAACAATTCTAGTGCCCGCAAATGGTACCAACATCCAACCGTGCGGTACATTTGTTTGGTGAGCGGTGGACTGCTCGCGTTCACCGCAGCGACCTACCGAAATCGACCGAAGGTTTACGCGCTCCAGCTGCGAAAGGATGAAATTGCGGACAAGGCCATTAAGCTTACAGCGCGCGAGCGGCGCTTCATCAAGTTCGCCTCGGTCGAGTTCGATGGGCAGATCTACATGACACCACAAGACTTTCTGGAGTCGGTTGTCGAACAGGAGCCCCGACCACGGCTCAAACGGAAGTCATTAACGCACGCCGAGATTCAGCAGCTGAAAGATTACACGCCACCGTTGAAGCACGGTTCGTCGCAGCTTTTCCGCAGCCTTCGGGACAAAGGAATAATTTCGTACACCGAGTATCTGTTTCTTCTATCGGTGCTCACAAAGCCTCACTCTGGCTTCCGCATTGCCTTTAACATGTTCGACACGGACGGAAATCAACGCGTGGATAAGGACGAATTTCTTGTGATGGAAAAAATTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4494#0 CCGCCCACGCGTCCGGGCGATGTACACAAACCGTGTCGTTCGCTGCTCGAAAACAAATCC 60 consensus_4494#1 -----------CCGTGGCGATGTACACAAACCGTGTCGTTCGCTGCTCGAAAACAAATCC 49 * ********************************************* consensus_4494#0 ATTTTTCACAGTGTTGTCGCGCAATTTCGGTAACAATTCTAGTGCCCGCAAATGGTACCA 120 consensus_4494#1 ATTTTTCACAGTGTTGTCGCGCAATTTCGGTAACAATTCTAGTGCCCGCAAATGGTACCA 109 ************************************************************ consensus_4494#0 ACATCCAACCGTGCGGTACATTTGTTTGGTGAGCGGTGGACTGCTCGCGTTCACCGCAGC 180 consensus_4494#1 ACATCCAACCGTGCGGTACATTTGTTTGGTGAGCGGTGGACTGCTCGCGTTCACCGCAGC 169 ************************************************************ consensus_4494#0 GACCTACCGAAATCGACCGAAGGTTTACGCGCTCCAGCTGCGAAAGGATGAAATTGCGGA 240 consensus_4494#1 GACCTACCGAAATCGACCGAAGGTTTACGCGCTCCAGCTGCGAAAGGATGAAATTGCGGA 229 ************************************************************ consensus_4494#0 CAAGGCCATTAAGCTTACAGCGCGCGAGCGGCGCTTCATCAAGTTCGCCTCGGTCGAGTT 300 consensus_4494#1 CAAGGCCATTAAGCTTACAGCGCGCGAGCGGCGCTTCATCAAGTTCGCCTCGGTCGAGTT 289 ************************************************************ consensus_4494#0 CGATGGGCAGATCTACATGACACCACAAGACTTTCTGGAGTCGGTCGTCGAACAGGAGCC 360 consensus_4494#1 CGATGGGCAGATCTACATGACACCACAAGACTTTCTGGAGTCGGTTGTCGAACAGGAGCC 349 ********************************************* ************** consensus_4494#0 CCGACCACGGCTCAAACGGAAGTCATTAACGCACGCCGAGATTCAGCAGCTGAAAGATTA 420 consensus_4494#1 CCGACCACGGCTCAAACGGAAGTCATTAACGCACGCCGAGATTCAGCAGCTGAAAGATTA 409 ************************************************************ consensus_4494#0 CACGCCACCGTTGAAGCACGGTTCGTCGCAGCTTTTCCGCAGCCTTCGGGACAAAGGAAT 480 consensus_4494#1 CACGCCACCGTTGAAGCACGGTTCGTCGCAGCTTTTCCGCAGCCTTCGGGACAAAGGAAT 469 ************************************************************ consensus_4494#0 AATTTCGTACACCGAGTATCTGTTTCTTCTATCGGTGCTCACAAAGCCTCACTCTGGCTT 540 consensus_4494#1 AATTTCGTACACCGAGTATCTGTTTCTTCTATCGGTGCTCACAAAGCCTCACTCTGGCTT 529 ************************************************************ consensus_4494#0 CCGCATTGCCTTTAACATGTTCGACACGGACGGAAATCAACGCGTGGATAAGGACGAATT 600 consensus_4494#1 CCGCATTGCCTTTAACATGTTCGACACGGACGGAAATCAACGCGTGGATAAGGACGAATT 589 ************************************************************ consensus_4494#0 TCTTGTGATTCGACAGCTGCTCGGAGGATCGCTGAAGGATCGTGATCTAGACGAGGCCAC 660 consensus_4494#1 TCTTGTGATGGAAAAAATTTT--------------------------------------- 610 ********* * * * * consensus_4494#0 TCGTCAAGCTCTCCTGCAC 679 consensus_4494#1 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||