These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4498#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 686 fasta sequence [CCGGATCTTTGCAGGAGGTTGTTGTGTCTTACTGGTAGAATTTACCCTCGGACTGTGCTGTGCGTGCCAAATAATTTCGCTGTGTAAAATATACGAATAATCCTTAAAGAAAAGTCAACAATGAGTGACGCGGTGTGCAGATTGTGTTTGCGTGACGTCGATCCAGACGATAGTGGCTCCTCCGTATTGGACGCAGCGTTCCAAAAGGCACTTGCAGCTGTGTTTAGGTTTAAGATAAAGTTCAATGAGGATTTACCTGAGTACACCTGCAAGCAATGTTCGTGGAACGTATTAGATTTTCACAGCTACAGCGAGATAGTGAAAAACAATCAGGAAAAGCTTCTCCAGGATACGTCGCAAACGAATCGATCAAATAACACCTTCACCGAAGACTCCTTCGAAGGCTTCGAAGATCAGGGTATAGAAGAAAATGGACTAGAAAAATCAAGCTCAATGAAAACGGTTGAAGAAAACGG------TGTTTCCGCTAAGAAGCAGGATCTGGACCACAGTGAAATGACAAGCGAATATCTGATGGACTATGAAACAACGACAAGCCTAGTAAATGGTGCTGCTGACAAACTTTGCTCGGTTTTAGTTTGTGAAGAGTTCATAATCTCTAATCTAAATAATGAAAACGATTCATCGAACAGCGATACAGTCGAAACACCCCTCGAAAGGGATATCCT] [+] EMBL BM579436 [CCGGATCTTTGCAGGAGGTTGTTGTGTCTTACTGGTAGAATTTACCCTCGGACTGTGCTGTGCGTGCCAAATAATTTCGCTGTGTAAAATATACGAATAATCCTTAAAGAAAAGTCAACAATGAGTGACGCGGTGTGCAGATTGTGTTTGCGTGACGTCGATCCAGACGATAGTGGCTCCTCCGTATTGGACGCAGCGTTCCAAAAGGCACTTGCAGCTGTGTTTAGGTTTAAGATAAAGTTCAATGAGGATTTACCTGAGTACACCTGCAAGCAATGTTCGTGGAACGTATTAGATTTTCACAGCTACAGCGAGATAGTGAAAAACAATCAGGAAAAGCTTCTCCAGGATACGTCGCAAACGAATCGATCAAATAACACCTTCACCGAAGACTCCTTCGAAGGCTTCGAAGATCAGGGTATAGAAGAAAATGGACTAGAAAAATCAAGCTCAATGAAAACGGTTGAAGAAAACGG TGTTTCCGCTAAGAAGCAGGATCTGGACCACAGTGAAATGACAAGCGAATATCTGATGGACTATGAAACAACGACAAGCCTAGTAAATGGTGCTGCTGACAAACTTTGCTCGGTTTTAGTTTGTGAAGAGTTCATAATCTCTAATCTAAATAATGAAAACGATTCATCGAACAGCGATACAGTCGAAACACCCC ] [+] EMBL BM595938 [ ccgGTGCTGTGCGTGCCAAATAATTTCGCTGTGTAAAATATACGAATAATCCTTAAAGAAAAGTCAACAATGAGTGACGCGGTGTGCAGATTGTGTTTGCGTGACGTCGATCCAGACGATAGTGGCTCCTCCGTATTGGACGCAGCGTTCCAAAAGGCACTTGCAGCTGTGTTTAGGTTTAAGATAAAGTTCAATGAGGATTTACCTGAGTACACCTGCAAGCAATGTTCGTGGAACGTATTAGATTTTCACAGCTACAGCGAGATAGTGAAAAACAATCAGGAAAAGCTTCTCCAGGATACGTTGCAAACGAATCGATCAAATAACACCTTCACCGAAGACTCCTTCGAAGGCTTCGAAGATCAGGGTATAGAAGAAAATGGACTAGAAAAATCAAGCTCAATGAAAACGGTTGAAGAAAACGGTTACATTGTTTCCGATAAGAAGCGGGATCTGGACCACAGTGAAATAACGAGCGAATATCTGATGGACTGTGAAACAACGACAAGCCTAGTGGATGGTGCTGCTGACAAACTTTGCTCGGTTCTAGTGTGTGAAGAGTTCATAATCTCTAATCTAAATAATGAAAACGATTCATCGAACAGCGATACAGTCGAAACACCCATCGAAAGGGATATCCT] consensusID : consensus_4498#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence [GAGGTTGTTGTGCCTTACTCGTCGAATTTACCCTCGGACTGTGCTGTGCGTGCCAAATAACCAACAATGAGTGACGCGGTGTGCAGATTGTGTTTGCGTGACGTCGATCCAGACGATAGTGGCTCCTCCGTATTGGACGCAGCGTTCCAAAAGGCACTTGCAGCTGTGTTTAGGTTTAAGATAAAGTTCAATGAGGATTTACCTGAGTACACTTGCAAGCAATGTTCGTGGAACGTATTAGATTTTCACAGCTACAGCGGGATAGTGAAAAACAATCAGGAAAAGCTTCACCAGGATACGTCGCAAACGAATCGATCAAATAACACCTTCACCGAAGACTCCTTCGAAGGCTTCGAAGATCAGGGTATAGAAGAAAATGGACTAGAAAAATCAAGCTCAACGAAAACGGTTGAAGAAAACGGTGTTTCCGCTAAGAAGCAGGATCTGGACCACAGTGAAATGACAAGCGAATATCTTATGGACTGTGAAAC] [+] EMBL BX604786 [GAGGTTGTTGTGCCTTACTCGTCGAATTTACCCTCGGACTGTGCTGTGCGTGCCAAATAACCAACAATGAGTGACGCGGTGTGCAGATTGTGTTTGCGTGACGTCGATCCAGACGATAGTGGCTCCTCCGTATTGGACGCAGCGTTCCAAAAGGCACTTGCAGCTGTGTTTAGGTTTAAGATAAAGTTCAATGAGGATTTACCTGAGTACACTTGCAAGCAATGTTCGTGGAACGTATTAGATTTTCACAGCTACAGCGGGATAGTGAAAAACAATCAGGAAAAGCTTCACCAGGATACGTCGCAAACGAATCGATCAAATAACACCTTCACCGAAGACTCCTTCGAAGGCTTCGAAGATCAGGGTATAGAAGAAAATGGACTAGAAAAATCAAGCTCAACGAAAACGGTTGAAGAAAACGGTGTTTCCGCTAAGAAGCAGGATCTGGACCACAGTGAAATGACAAGCGAATATCTTATGGACTGTGAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4498#0 CCGGATCTTTGCAGGAGGTTGTTGTGTCTTACTGGTAGAATTTACCCTCGGACTGTGCTG 60 consensus_4498#1 --------------GAGGTTGTTGTGCCTTACTCGTCGAATTTACCCTCGGACTGTGCTG 46 ************ ****** ** *********************** consensus_4498#0 TGCGTGCCAAATAATTTCGCTGTGTAAAATATACGAATAATCCTTAAAGAAAAGTCAACA 120 consensus_4498#1 TGCGTGCCAAATAAC----------------------------------------CAACA 66 ************** ***** consensus_4498#0 ATGAGTGACGCGGTGTGCAGATTGTGTTTGCGTGACGTCGATCCAGACGATAGTGGCTCC 180 consensus_4498#1 ATGAGTGACGCGGTGTGCAGATTGTGTTTGCGTGACGTCGATCCAGACGATAGTGGCTCC 126 ************************************************************ consensus_4498#0 TCCGTATTGGACGCAGCGTTCCAAAAGGCACTTGCAGCTGTGTTTAGGTTTAAGATAAAG 240 consensus_4498#1 TCCGTATTGGACGCAGCGTTCCAAAAGGCACTTGCAGCTGTGTTTAGGTTTAAGATAAAG 186 ************************************************************ consensus_4498#0 TTCAATGAGGATTTACCTGAGTACACCTGCAAGCAATGTTCGTGGAACGTATTAGATTTT 300 consensus_4498#1 TTCAATGAGGATTTACCTGAGTACACTTGCAAGCAATGTTCGTGGAACGTATTAGATTTT 246 ************************** ********************************* consensus_4498#0 CACAGCTACAGCGAGATAGTGAAAAACAATCAGGAAAAGCTTCTCCAGGATACGTCGCAA 360 consensus_4498#1 CACAGCTACAGCGGGATAGTGAAAAACAATCAGGAAAAGCTTCACCAGGATACGTCGCAA 306 ************* ***************************** **************** consensus_4498#0 ACGAATCGATCAAATAACACCTTCACCGAAGACTCCTTCGAAGGCTTCGAAGATCAGGGT 420 consensus_4498#1 ACGAATCGATCAAATAACACCTTCACCGAAGACTCCTTCGAAGGCTTCGAAGATCAGGGT 366 ************************************************************ consensus_4498#0 ATAGAAGAAAATGGACTAGAAAAATCAAGCTCAATGAAAACGGTTGAAGAAAACGGTGTT 480 consensus_4498#1 ATAGAAGAAAATGGACTAGAAAAATCAAGCTCAACGAAAACGGTTGAAGAAAACGGTGTT 426 ********************************** ************************* consensus_4498#0 TCCGCTAAGAAGCAGGATCTGGACCACAGTGAAATGACAAGCGAATATCTGATGGACTAT 540 consensus_4498#1 TCCGCTAAGAAGCAGGATCTGGACCACAGTGAAATGACAAGCGAATATCTTATGGACTGT 486 ************************************************** ******* * consensus_4498#0 GAAACAACGACAAGCCTAGTAAATGGTGCTGCTGACAAACTTTGCTCGGTTTTAGTTTGT 600 consensus_4498#1 GAAAC------------------------------------------------------- 491 ***** consensus_4498#0 GAAGAGTTCATAATCTCTAATCTAAATAATGAAAACGATTCATCGAACAGCGATACAGTC 660 consensus_4498#1 ------------------------------------------------------------ consensus_4498#0 GAAACACCCCTCGAAAGGGATATCCT 686 consensus_4498#1 -------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||