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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4522#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 930 fasta sequence
[TGTCAAACGCCACGAGTTGAAGTAAACAAAGTGCACGGTTTTACGTTCCCTTTCTGGG---TCATTAGAAACCCACAAATTTGTTTAAAAATACATCCAAATACTGTACAAACTGTAGTAAAACATGTCCGTAAGCTTTACCCGTCGAAGTACACGATTGGAGCTGCTCAGTGCACGGGCATTGCCACAGCAAAAGATCATCGTTATAACCGATAAACTAGGCTTTGAACCAAATGCAAATAAAGTCACAACTAGCTGGCTAAGCGAGCAGTACGGCGATAAAGCTACCGCCGCCGGTGTGACCCATTTGAACGAATCGTCTAAATACCTCCTGCTGATCCTCTCAGAGCTAGAGCGCCGATTTGAACCGCGCCAAATATTCCACTACATCGCCCAGTGCAAAAGGGATGCCACCG-TCGAGCACGTGTTCGTGTGGATTGTGGAGCACAAGCTGCAGGAGCCGTTTCTGCGACCCTACCTCGAGCATATGGCCGACAGTGTGATAACGTTCGAGGACCGGCAGCACCTGTCGCTGCTGGTAAAGAAAAGCACCGGAGCCGTCACGCACAAGTACTACGAGTTTGATCCGCTGAAAGATTCGATCACTGTTGTGGAAGCAAAGCGA-GCAGCGGCGACCAAAGCAGCTGCGGTTTCGATGGAGGTCGATCCACCGCCGAATCCGGCCAGCTTGGGCACGTTCAAAATCGATCTGAAAGATGAGGAGGTAGCGGCGAAGAATGCACTCACGTTGCCCTTTGAGTTCTTCAAAACACTCCCCGAAGGAGGAAAGATCCTGTACCATCCGGACGCGGAGGATGATCTTGACGAGGAGGATCCCGACGATGACTTGCTGATATGAGTTGCGAAATACACACACACACGCACCCGTGGAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCACAT]
[+] EMBL CNS08SA8 [TGTCAAACGCCACGAGTTGAAGTAAACAAAGTGCACGGTTTTACGTTCCCTTTCTGGG TCATTAGAAACCCACAAATTTGTTTAAAAATACATCCAAATACTGTACAAACTGTAGTAAAACATGTCCGTAAGCTTTACCCGTCGAAGTACACGATTGGAGCTGCTCAGTGCACGGGCATTGCCACAGCAAAAGATCATCGTTATAACCGATAAACTAGGCTTTGAACCAAATGCAAATAAAGTCACAACTAGCTGGCTAAGCGAGCAGTACGGCGATAAAGCTACCGCCGCCGGTGTGACCCATTTGAACGAATCGTCTAAATACCTCCTGCTGATCCTCTCAGAGCTAGAGCGCCGATTTGAACCGCGCCAAATATTCCACTACATCGCCCAGTGCAAAAGGGATGCCACCG TCGAGCACGTGTTCGTGTGGATTGTGGAGCACAAGCTGCAGGAGCCGTTTCTGCGACCCTACCTCGAGCATATGGCCGACAGTGTGATAACGTTCGAGGACCGGCAGCACCTGTCGCTGCTGGTAAAGAAAAGCACCGGAGCCGTCACGCACAAGTACTACGAGTTTGATCCGCTGAAAGATTCGATCACTGTTGTGGAAGCAAAGCGA GCAGCGGCGACCAAAGCAGCTGCGGTTTCGATGGAGGTCGATCCACCGCCGAATCCGGCCAGCTTGGGCACGTTCAAAATCGATCTGAAAGATGAGGAGGTAGCGGCGAAGAATGCACTCACGTTGCCCTTTGAGTTCTTCAAAACACTCCCCGAAGGAGGAAAGATCCTGTACCATCCGGACGCGGAGGATGATCTTGACGAGGAGGATCCCGACGATGACTTGCTGATATGAGTTGCGAAATACACACACACACGCACCCGTGGAACG ]
[+] EMBL CNS095ZK [ AAACAAAGTGCTCGATTTTACGTTCCCTTTCTGGGGGAACATAAAAAACACACAAATTTGTTGAAAAATACATCCAAATAGTGTACAAACTGTCCTTAAACATGTCCGTAAGCTTTACCCGTCGAAGTACTCGGTTGGAGCTGCTCAGTGCACGGGCATTGCCACAGCAAAAGGTCATCGTTATAACCGATAAACTAGGCTTTGAACCAAACGCAAATAAAGTCACAACCAGCTGGCTAAGTGAGCAGTACGGCGATAAAGCTACCGCCGCCGGTGTGACCCATTTGAACGAATCGTCTAAATACCTCCTGCTGATCCTCTCGCAGCTAGAGCGTCGATTTGAACCGCGCCAAATATTCCACTACATCGCCCAGTGCAAAAGGGATGCCACCGCTCGAGCACGTGTTCGTGTGGATTGTGGAGCAAAAGCTGCAGGAGCCGTTTCTGCGACCCTACCTCGAGCATATGGCCGACAGTGTGATAACGTTCGAGGACCGGCAGCACCTGTCGCTGCTGGTAAAGAAAAGCACCGGAGCCGTCACGCACAAGTACTACGAGTTTGATCCGCTGAAAGATTCGATCACTGTTGTGGAAGCAAAGCGATGCAGCGGCGACCAAAGCAGCTGCGGTTTCGATGGAGGTCGATCCACCGCCGAATCCGGCCAGCTTGGGCACGTTCAAAATCGATCTGAAAGATGAGGAGGTAGCGGCGAAGAATGCACTCACGTTGCCCTTTGGGTTCTTCAAAACACTCCCCGAA GAGGAAAGATCCTGTACCATCCGGACGCGGAGGATGATCTTGACGAGGAGGATCCCGACGATGACTTGCTGATATGAGTTGCGAAATACACACACACACGCACCCGTGGAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCACAT]
consensusID : consensus_4522#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 715 fasta sequence
[TGCTTGCCACATTTTAGATAAACTAGGATTTGAACCAAATGCAAATAAAGTAACAACCAGCTGGCTAAGTGAGCAGTACGGCGATAAAGCTATCACCGCTGGTGTGACCCATTTGAACGAATCGTCAAAATACCTGCTGCTGATCCTCTCGCAGCTAGAGCGCCGATTTGAACCGCGCCAAATATTCCACTACATCGCACAGTGCAAAAAGGATGCCACCGTCGACCACGTGTTCGTGTGGATTGTGGAGCAAAAGCTGCAGGAGCCGTTTCTGCGACCCTACCTCGAGCATATGGCCGACAGTGTGATAACGTTCGATGACCGGCAGCACCTGTCGCTGCTGGTAAAGAAAAACACCGGAGCCGTCACGCACAAGTATTACGAGTTTGATCCGCTGAAAGATTCGATCACTGTTGTGGAAGCAAAGCGAGCAGCTGCGACCAAAGCAGCTACGGTTTCGATGGAGGAAAATCCACCGCCGAATCCAGCCAGCTTGGGTACGTTCAAAATCGATCTGAAAGATGAGGAGGTAGCGGCGAAGAATGCACTCACGTTGCCCTTTGAGTTGTAAGTATTGCAAGTTGTCTTTTTACGTTCGATTTTGTAATATTTTGGAACGTTTTTTTAGCTTCAAAACACTCCCCGAAGGAGGAAAGATCCTGTACCACCCGGACGCTGAGGATGATCTTGACGAGGAGGATCCCGACGATGACTT]
[+] EMBL BX618875 [TGCTTGCCACATTTTAGATAAACTAGGATTTGAACCAAATGCAAATAAAGTAACAACCAGCTGGCTAAGTGAGCAGTACGGCGATAAAGCTATCACCGCTGGTGTGACCCATTTGAACGAATCGTCAAAATACCTGCTGCTGATCCTCTCGCAGCTAGAGCGCCGATTTGAACCGCGCCAAATATTCCACTACATCGCACAGTGCAAAAAGGATGCCACCGTCGACCACGTGTTCGTGTGGATTGTGGAGCAAAAGCTGCAGGAGCCGTTTCTGCGACCCTACCTCGAGCATATGGCCGACAGTGTGATAACGTTCGATGACCGGCAGCACCTGTCGCTGCTGGTAAAGAAAAACACCGGAGCCGTCACGCACAAGTATTACGAGTTTGATCCGCTGAAAGATTCGATCACTGTTGTGGAAGCAAAGCGAGCAGCTGCGACCAAAGCAGCTACGGTTTCGATGGAGGAAAATCCACCGCCGAATCCAGCCAGCTTGGGTACGTTCAAAATCGATCTGAAAGATGAGGAGGTAGCGGCGAAGAATGCACTCACGTTGCCCTTTGAGTTGTAAGTATTGCAAGTTGTCTTTTTACGTTCGATTTTGTAATATTTTGGAACGTTTTTTTAGCTTCAAAACACTCCCCGAAGGAGGAAAGATCCTGTACCACCCGGACGCTGAGGATGATCTTGACGAGGAGGATCCCGACGATGACTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4522#0 TGTCAAACGCCACGAGTTGAAGTAAACAAAGTGCACGGTTTTACGTTCCCTTTCTGGGTC 60
consensus_4522#1 ------------------------------------------------------------
consensus_4522#0 ATTAGAAACCCACAAATTTGTTTAAAAATACATCCAAATACTGTACAAACTGTAGTAAAA 120
consensus_4522#1 ------------------------------------------------------------
consensus_4522#0 CATGTCCGTAAGCTTTACCCGTCGAAGTACACGATTGGAGCTGCTCAGTGCACGGGCATT 180
consensus_4522#1 ------------------------------------------------------------
consensus_4522#0 GCCACAGCAAAAGATCATCGTTATAACCGATAAACTAGGCTTTGAACCAAATGCAAATAA 240
consensus_4522#1 -----------TGCTTGCCAC-ATTTTAGATAAACTAGGATTTGAACCAAATGCAAATAA 48
* * * ** *********** ********************
consensus_4522#0 AGTCACAACTAGCTGGCTAAGCGAGCAGTACGGCGATAAAGCTACCGCCGCCGGTGTGAC 300
consensus_4522#1 AGTAACAACCAGCTGGCTAAGTGAGCAGTACGGCGATAAAGCTATCACCGCTGGTGTGAC 108
*** ***** *********** ********************** * **** ********
consensus_4522#0 CCATTTGAACGAATCGTCTAAATACCTCCTGCTGATCCTCTCAGAGCTAGAGCGCCGATT 360
consensus_4522#1 CCATTTGAACGAATCGTCAAAATACCTGCTGCTGATCCTCTCGCAGCTAGAGCGCCGATT 168
****************** ******** ************** ****************
consensus_4522#0 TGAACCGCGCCAAATATTCCACTACATCGCCCAGTGCAAAAGGGATGCCACCGTCGAGCA 420
consensus_4522#1 TGAACCGCGCCAAATATTCCACTACATCGCACAGTGCAAAAAGGATGCCACCGTCGACCA 228
****************************** ********** *************** **
consensus_4522#0 CGTGTTCGTGTGGATTGTGGAGCACAAGCTGCAGGAGCCGTTTCTGCGACCCTACCTCGA 480
consensus_4522#1 CGTGTTCGTGTGGATTGTGGAGCAAAAGCTGCAGGAGCCGTTTCTGCGACCCTACCTCGA 288
************************ ***********************************
consensus_4522#0 GCATATGGCCGACAGTGTGATAACGTTCGAGGACCGGCAGCACCTGTCGCTGCTGGTAAA 540
consensus_4522#1 GCATATGGCCGACAGTGTGATAACGTTCGATGACCGGCAGCACCTGTCGCTGCTGGTAAA 348
****************************** *****************************
consensus_4522#0 GAAAAGCACCGGAGCCGTCACGCACAAGTACTACGAGTTTGATCCGCTGAAAGATTCGAT 600
consensus_4522#1 GAAAAACACCGGAGCCGTCACGCACAAGTATTACGAGTTTGATCCGCTGAAAGATTCGAT 408
***** ************************ *****************************
consensus_4522#0 CACTGTTGTGGAAGCAAAGCGAGCAGCGGCGACCAAAGCAGCTGCGGTTTCGATGGAGGT 660
consensus_4522#1 CACTGTTGTGGAAGCAAAGCGAGCAGCTGCGACCAAAGCAGCTACGGTTTCGATGGAGGA 468
*************************** *************** ***************
consensus_4522#0 CGATCCACCGCCGAATCCGGCCAGCTTGGGCACGTTCAAAATCGATCTGAAAGATGAGGA 720
consensus_4522#1 AAATCCACCGCCGAATCCAGCCAGCTTGGGTACGTTCAAAATCGATCTGAAAGATGAGGA 528
**************** *********** *****************************
consensus_4522#0 GGTAGCGGCGAAGAATGCACTCACGTTGCCCTTTGAGTTCTTCAAAACACTCCCCGAAGG 780
consensus_4522#1 GGTAGCGGCGAAGAATGCACTCACGTTGCCCTTTGAGTTGT---AAGTATTGC------- 578
*************************************** * ** * * *
consensus_4522#0 AGGAAAGATCCTGTACCATCCGGACGCGGAGGATGATCTTGACGAGGAGGATCCCGACGA 840
consensus_4522#1 --AAGTTGTCTTTTTACGTTCGATTTTG-----TAATATTTTGGAACGTTTTTTTAGCTT 631
* ** * * * * ** * * ** ** ** * *
consensus_4522#0 TGACTTGCTGATATGAGTTGCGAAATACACACACACACGCACCCGTGGAACGCAAAAAAA 900
consensus_4522#1 CAAAACACTCCCCGAAGGAGGAAAGATCCTGTAC-CACCCGGACGCTGAGGATGATCTTG 690
* ** ** * ** * ** *** * ** ** *
consensus_4522#0 AAAAAAAAAAAAAAAAAAAAAAAGCCACAT 930
consensus_4522#1 ACGAGGAGGATCCCGACGATGACTT----- 715
* * * * * * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||