cluster # 4530

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Anopheles gambiae
cluster # 4530 cluster # 4530 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4530#0 length = 856 sequences # 2

consensus_4530#1 length = 468 sequences # 1

consensusID : consensus_4530#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 856
fasta sequence

                              [AGATAGACATTATTTTCTGTTTGTTTTCTAATTGGAATTTTGGCTGAACAAAACAAAACAACAACATTCGAATGTGATTGATGAGATGGTACTGATGAATTGGTCGTCGCGTAGGTGTGTAGCTATTTTTTTAAGCAACACCTTACACGAAAAGGGACAAATAAAATTTGATAGATAGAGCCAGTACCCCCGAGCAGATACTGTCGGAACAAAAGAACAATATGTAACCAAGATGCAATACGATACAGCAGCATTCGCAGCAGAGAGTAATAGCAGCGGTAAGGGAAGATTAGCGTTTTTGCTCGTGCGGGAAGGTGATAATTTGTTAAATGTTGCGCTCATATATTGTCAGTATTTCGATGGCAGCAAACAACCCGATCGCTTCGTTTGCGTAGAACCACGCAAGTGCAGCGTGGCAGGGAGTAGGAGGAAAGAGGCAGTTAGCAGATCGGTGAAATGTTTTTTTGTAACAAGGCAAACAACAAAAACAAAACGAAAACACAATCGTACATTCGCGCACACGCTTATTACAACGTACACACATTTAGCCGCGACATTGTGCACCACAAACAATAAGAAGGCGCATGCAATAGTTACAGAACAATTTTGCTAACGAAACAAAAAATCCAACTTTCAACAATCTCCTTCTCCTTCAAGCTGTTGTGTGCTAAGCCCGTTGCAAATGTAATAACTAATTGCAAATCCAAAATAGTGGTAGAAATGTTAACCTGACCTGTCTTACTTGGCACGTTCAAGAGAGCGCATAACACAACCCGCTACACATACACGCAAGCGCACCCGCTAGGCTTAGCGCGGATGCATTGAAACCAAAATTGACTCTAAAATAAAGTGCAAA]

[+] EMBL BX608672             [AGATAGACATTATTTTCTGTTTGTTTTCTAATTGGAATTTTGGCTGAACAAAACAAAACAACAACATTCGAATGTGATTGATGAGATGGTACTGATGAATTGGTCGTCGCGTAGGTGTGTAGCTATTTTTTTAAGCAACACCTTACACGAAAAGGGACAAATAAAATTTGATAGATAGAGCCAGTACCCCCGAGCAGATACTGTCGGAACAAAAGAACAATATGTAACCAAGATGCAATACGATACAGCAGCATTCGCAGCAGAGAGTAATAGCAGCGGTAAGGGAAGATTAGCGTTTTTGCTCGTGCGGGAAGGTGATAATTTGTTAAATGTTGCGCTCATATATTGTCAGTATTTCGATGGCAGCAAACAACCCGATCGCTTCGTTTGCGTAGAACCACGCAAGTGCAGCGTGGCAGGGAGTAGGAGGAAAGAGGCAGTTAGCAGATCGGTGAAATGTTTTTTTGTAACAAGGCAAACAACAAAAACAAAACGAAAACACAATCGTACATTCGCGCACACGCTTATTACAACGTACACACATTTAGCCGCGACATTGTGCACCACAAACAATAAGAAGGCGCATGCAATAGTTACAGAACAATTTTGCTAACGAAACAAAAAATCCAACTTTCAACAATCTCCTTCTCCTTCAAGCTGTTGTGTGCTAAGCCCGTTGCAAATGTAATAACTAATTG                                                                                                                                                              ]
[+] EMBL BX616571             [                                                                                                                                                                                                                                 AACCAAGATGCAATACGATACAGCAGCATTCGCAGCAGAGAGTAATAGCAGCGGTAAGGGAAGATTAGCGTTTTTGCTCGTGCGGGAAGGTGATAATTTGTTAAATGTTGCGCTCATATATTGTCAGTATTTCGATGGCAGCAAACAACCCGATCGCTTCGTTTGCGTAGAACCACGCAAGTGCAGCGTGGCAGGGAGTAGGAGGAAAGAGGCAGTTAGCAGATCGGTGAAATGTTTTTTTGTAACAAGGCAAACAACAAAAACAAAACGAAAACACAATCGTACATTCGCGCACACGCTTATTACAACGTACACACATTTAGCCGCGACATTGTGCACCACAAACAATAAGAAGGCGCATGCAATAGTTACAGAACAATTTTGCTAACGAAACAAAAAATCCAACTTTCAACAATCTCCTTCTCCTTCAAGCTGTTGTGTGCTAAGCCCGTTGCAAATGTAATAACTAATTGCAAATCCAAAATAGTGGTAGAAATGTTAACCTGACCTGTCTTACTTGGCACGTTCAAGAGAGCGCATAACACAACCCGCTACACATACACGCAAGCGCACCCGCTAGGCTTAGCGCGGATGCATTGAAACCAAAATTGACTCTAAAATAAAGTGCAAA]




>consensus_4530#0
AGATAGACATTATTTTCTGTTTGTTTTCTAATTGGAATTTTGGCTGAACAAAACAAAACA
ACAACATTCGAATGTGATTGATGAGATGGTACTGATGAATTGGTCGTCGCGTAGGTGTGT
AGCTATTTTTTTAAGCAACACCTTACACGAAAAGGGACAAATAAAATTTGATAGATAGAG
CCAGTACCCCCGAGCAGATACTGTCGGAACAAAAGAACAATATGTAACCAAGATGCAATA
CGATACAGCAGCATTCGCAGCAGAGAGTAATAGCAGCGGTAAGGGAAGATTAGCGTTTTT
GCTCGTGCGGGAAGGTGATAATTTGTTAAATGTTGCGCTCATATATTGTCAGTATTTCGA
TGGCAGCAAACAACCCGATCGCTTCGTTTGCGTAGAACCACGCAAGTGCAGCGTGGCAGG
GAGTAGGAGGAAAGAGGCAGTTAGCAGATCGGTGAAATGTTTTTTTGTAACAAGGCAAAC
AACAAAAACAAAACGAAAACACAATCGTACATTCGCGCACACGCTTATTACAACGTACAC
ACATTTAGCCGCGACATTGTGCACCACAAACAATAAGAAGGCGCATGCAATAGTTACAGA
ACAATTTTGCTAACGAAACAAAAAATCCAACTTTCAACAATCTCCTTCTCCTTCAAGCTG
TTGTGTGCTAAGCCCGTTGCAAATGTAATAACTAATTGCAAATCCAAAATAGTGGTAGAA
ATGTTAACCTGACCTGTCTTACTTGGCACGTTCAAGAGAGCGCATAACACAACCCGCTAC
ACATACACGCAAGCGCACCCGCTAGGCTTAGCGCGGATGCATTGAAACCAAAATTGACTC
TAAAATAAAGTGCAAA

consensusID : consensus_4530#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 468
fasta sequence

                              [AATCGCCGAGGTTGAATTTGGCTGAACAAACAAAACACACATTCGAATGTGATTGATGAGATGGTACTGATGAATTGGTCGTCGCGCTGGTGTGTAGCTATTTTTTTAAGCAACACCTTACACGAAAAGGGACAAATAAAATTTGATAGATAGAGCCAGTACCCCCGAGCAGATACTGTCGGAACAAAAGAACAATATGTAACCAAGATGCAATACGATACAGCAGCATTCGCAGCAGAGAGTAATAGCAGCGGTAAGGGAAGATTAGCGTTTTTGCTCGTGCGGGAAGGTGATAATTTGTTAAATGTTGCGCTCATATATTGTCAGTATTTCGATGGCAGCAAACAACCCGATCGCTTCGTTTGCGTAGAACCACGCAAGTGCAGCGTGGCAGGGAGTAGGAGGAAAGAGGCAGTTAGCAGATCGGTGAAATGTTTTTNAGTAACAAGGCAAACAACAAAAACAAAA]

[+] EMBL AL932906             [AATCGCCGAGGTTGAATTTGGCTGAACAAACAAAACACACATTCGAATGTGATTGATGAGATGGTACTGATGAATTGGTCGTCGCGCTGGTGTGTAGCTATTTTTTTAAGCAACACCTTACACGAAAAGGGACAAATAAAATTTGATAGATAGAGCCAGTACCCCCGAGCAGATACTGTCGGAACAAAAGAACAATATGTAACCAAGATGCAATACGATACAGCAGCATTCGCAGCAGAGAGTAATAGCAGCGGTAAGGGAAGATTAGCGTTTTTGCTCGTGCGGGAAGGTGATAATTTGTTAAATGTTGCGCTCATATATTGTCAGTATTTCGATGGCAGCAAACAACCCGATCGCTTCGTTTGCGTAGAACCACGCAAGTGCAGCGTGGCAGGGAGTAGGAGGAAAGAGGCAGTTAGCAGATCGGTGAAATGTTTTTNAGTAACAAGGCAAACAACAAAAACAAAA]




>consensus_4530#1
AATCGCCGAGGTTGAATTTGGCTGAACAAACAAAACACACATTCGAATGTGATTGATGAG
ATGGTACTGATGAATTGGTCGTCGCGCTGGTGTGTAGCTATTTTTTTAAGCAACACCTTA
CACGAAAAGGGACAAATAAAATTTGATAGATAGAGCCAGTACCCCCGAGCAGATACTGTC
GGAACAAAAGAACAATATGTAACCAAGATGCAATACGATACAGCAGCATTCGCAGCAGAG
AGTAATAGCAGCGGTAAGGGAAGATTAGCGTTTTTGCTCGTGCGGGAAGGTGATAATTTG
TTAAATGTTGCGCTCATATATTGTCAGTATTTCGATGGCAGCAAACAACCCGATCGCTTC
GTTTGCGTAGAACCACGCAAGTGCAGCGTGGCAGGGAGTAGGAGGAAAGAGGCAGTTAGC
AGATCGGTGAAATGTTTTTNAGTAACAAGGCAAACAACAAAAACAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4530#0      AGATAGACATTATTTTCTGTTTGTTTTCTAATTGGAATTTTGGCTGAACAAAACAAAACA 60
consensus_4530#1      ---------------------AATCGCCGAGGTTGAATTT-GGCTGAACAAA-CAAAACA 37
                                             *   * *  * ****** *********** *******

consensus_4530#0      ACAACATTCGAATGTGATTGATGAGATGGTACTGATGAATTGGTCGTCGCGTAGGTGTGT 120
consensus_4530#1      --CACATTCGAATGTGATTGATGAGATGGTACTGATGAATTGGTCGTCGCGCTGGTGTGT 95
                         ************************************************  *******

consensus_4530#0      AGCTATTTTTTTAAGCAACACCTTACACGAAAAGGGACAAATAAAATTTGATAGATAGAG 180
consensus_4530#1      AGCTATTTTTTTAAGCAACACCTTACACGAAAAGGGACAAATAAAATTTGATAGATAGAG 155
                      ************************************************************

consensus_4530#0      CCAGTACCCCCGAGCAGATACTGTCGGAACAAAAGAACAATATGTAACCAAGATGCAATA 240
consensus_4530#1      CCAGTACCCCCGAGCAGATACTGTCGGAACAAAAGAACAATATGTAACCAAGATGCAATA 215
                      ************************************************************

consensus_4530#0      CGATACAGCAGCATTCGCAGCAGAGAGTAATAGCAGCGGTAAGGGAAGATTAGCGTTTTT 300
consensus_4530#1      CGATACAGCAGCATTCGCAGCAGAGAGTAATAGCAGCGGTAAGGGAAGATTAGCGTTTTT 275
                      ************************************************************

consensus_4530#0      GCTCGTGCGGGAAGGTGATAATTTGTTAAATGTTGCGCTCATATATTGTCAGTATTTCGA 360
consensus_4530#1      GCTCGTGCGGGAAGGTGATAATTTGTTAAATGTTGCGCTCATATATTGTCAGTATTTCGA 335
                      ************************************************************

consensus_4530#0      TGGCAGCAAACAACCCGATCGCTTCGTTTGCGTAGAACCACGCAAGTGCAGCGTGGCAGG 420
consensus_4530#1      TGGCAGCAAACAACCCGATCGCTTCGTTTGCGTAGAACCACGCAAGTGCAGCGTGGCAGG 395
                      ************************************************************

consensus_4530#0      GAGTAGGAGGAAAGAGGCAGTTAGCAGATCGGTGAAATGTTTTTTTGTAACAAGGCAAAC 480
consensus_4530#1      GAGTAGGAGGAAAGAGGCAGTTAGCAGATCGGTGAAATGTTTTTNAGTAACAAGGCAAAC 455
                      ********************************************  **************

consensus_4530#0      AACAAAAACAAAACGAAAACACAATCGTACATTCGCGCACACGCTTATTACAACGTACAC 540
consensus_4530#1      AACAAAAACAAAA----------------------------------------------- 468
                      *************                                               

consensus_4530#0      ACATTTAGCCGCGACATTGTGCACCACAAACAATAAGAAGGCGCATGCAATAGTTACAGA 600
consensus_4530#1      ------------------------------------------------------------
                                                                                  

consensus_4530#0      ACAATTTTGCTAACGAAACAAAAAATCCAACTTTCAACAATCTCCTTCTCCTTCAAGCTG 660
consensus_4530#1      ------------------------------------------------------------
                                                                                  

consensus_4530#0      TTGTGTGCTAAGCCCGTTGCAAATGTAATAACTAATTGCAAATCCAAAATAGTGGTAGAA 720
consensus_4530#1      ------------------------------------------------------------
                                                                                  

consensus_4530#0      ATGTTAACCTGACCTGTCTTACTTGGCACGTTCAAGAGAGCGCATAACACAACCCGCTAC 780
consensus_4530#1      ------------------------------------------------------------
                                                                                  

consensus_4530#0      ACATACACGCAAGCGCACCCGCTAGGCTTAGCGCGGATGCATTGAAACCAAAATTGACTC 840
consensus_4530#1      ------------------------------------------------------------
                                                                                  

consensus_4530#0      TAAAATAAAGTGCAAA 856
consensus_4530#1      ----------------