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Anopheles gambiae
cluster # 4536 cluster # 4536       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4536#0 length = 1018 sequences # 2  
consensus_4536#1 length = 82 sequences # 1  

consensusID : consensus_4536#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1018
fasta sequence
                              [ATGTGGAGGATTCGGGCGTTAGCGCGGAACAGGAAATCAACGAACGAACGCCCATCCTCGGCAGCATTAACCGTGCACCACCGCAGCACGATGCGATCGGATTTTTCGGCGCGCTGCGCATACCCGGCGTGATCGAGTTCTCGCTCAGCCTGTTCTTCTCCAAGCTCGTCAGCTACACATTCCTTTTCTGGCTGCCGTTTTACATTCAACACTCTACTTCCATGGGCGCCAAGCTGTCGGCGGACGTATCGACGGTGTTCGATATCGGGGGCATTATTGGTGCAATTGCGGCCGGCATGCTGTCAGACGCATCCGCCATGCCGGCGACCACCTGCACGGGCATGCTGGCGATCGCTGCACCGCTGCTACTTATCTACCGGTGCTGGGGCAGCGTTTCGCTGTCCGTCAACATACTGCTCCTGTTCGTGGTCGGGCTGATGGTGAACGGACCGTACGCACTGATTACCACCTCGGTCAGCGCCGAGCTGGGGCAGCACAGCTCGCTAAATGGCAACTCGAAGGCACTCGCCACCGTCACCGCCATCATCGATGGGACGGGCTCGATCGGGGCGGCCATCGGGCCCCTGCTGGCAGGCATGGTGTCCGGCTGGAACAACGTGTTCTACATGCTCGTCATATCGGACGTGCTCGCGCTGGCCATGTTGCTGCGCATCAGCAGCAAGGAATGCTCCAGGCGCAACATCAACCGACGCTACAACGTGCGCATTGAGTGATAAGGGAAGGGGGTAGAGGAAGAAGGAAAGGAAGGAATTCGAATACGCGCACAAAGGTCGCGGTGGGTTTCGTGCGCGTGTGTACAGTTTTTACAGCTAGCTCTCGATATATACACAATATATGGTCTGATATTTTCGAGCACGAAACGCGGGGGAAAAGGGGGGAAAGAGGATACAGTGGGGTGGGTTTTGCTTTTTTTATCATTAATGTTTAGTGCGTTTTTTTTTTCGCCGCCTGCAGTCGATAAGTATAAATAAAAGCTCTTTAAAAACTGGGTGGTCTC]

[+] EMBL BX608832             [ATGTGGAGGATTCGGGCGTTAGCGCGGAACAGGAAATCAACGAACGAACGCCCATCCTCGGCAGCATTAACCGTGCACCACCGCAGCACGATGCGATCGGATTTTTCGGCGCGCTGCGCATACCCGGCGTGATCGAGTTCTCGCTCAGCCTGTTCTTCTCCAAGCTCGTCAGCTACACATTCCTTTTCTGGCTGCCGTTTTACATTCAACACTCTACTTCCATGGGCGCCAAGCTGTCGGCGGACGTATCGACGGTGTTCGATATCGGGGGCATTATTGGTGCAATTGCGGCCGGCATGCTGTCAGACGCATCCGCCATGCCGGCGACCACCTGCACGGGCATGCTGGCGATCGCTGCACCGCTGCTACTTATCTACCGGTGCTGGGGCAGCGTTTCGCTGTCCGTCAACATACTGCTCCTGTTCGTGGTCGGGCTGATGGTGAACGGACCGTACGCACTGATTACCACCTCGGTCAGCGCCGAGCTGGGGCAGCACAGCTCGCTAAATGGCAACTCGAAGGCACTCGCCACCGTCACCGCCATCATCGATGGGACGGGCTCGATCGGGGCGGCCATCGGGCCCCTGCTGGCAGGCATGGTGTCCGGCTG                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL BX624039             [                                                                                                                                                                                                                                                                                                                                                                                                                                                   TGATGGTGAACGGACNGTACGCACTGATTACCACNTCGGTCAGCGCNGAGCTGGGGCAGCACAGCTCGCTAAATGGCAACTCGAAGGCACTCGCCACCGTCACCGCCATCATCGATGGGACGGGCTCGATCGGGGCGGCCATCGGGCCCCTGCTGGCAGGCATGGTGTCCGGCTGGAACAACGTGTTCTACATGCTCGTCATATCGGACGTGCTCGCGCTGGCCATGTTGCTGCGCATCAGCAGCAAGGAATGCTCCAGGCGCAACATCAACCGACGCTACAACGTGCGCATTGAGTGATAAGGGAAGGGGGTAGAGGAAGAAGGAAAGGAAGGAATTCGAATACGCGCACAAAGGTCGCGGTGGGTTTCGTGCGCGTGTGTACAGTTTTTACAGCTAGCTCTCGATATATACACAATATATGGTCTGATATTTTCGAGCACGAAACGCGGGGGAAAAGGGGGGAAAGAGGATACAGTGGGGTGGGTTTTGCTTTTTTTATCATTAATGTTTAGTGCGTTTTTTTTTTCGCCGCCTGCAGTCGATAAGTATAAATAAAAGCTCTTTAAAAACTGGGTGGTCTC]


>consensus_4536#0 ATGTGGAGGATTCGGGCGTTAGCGCGGAACAGGAAATCAACGAACGAACGCCCATCCTCG GCAGCATTAACCGTGCACCACCGCAGCACGATGCGATCGGATTTTTCGGCGCGCTGCGCA TACCCGGCGTGATCGAGTTCTCGCTCAGCCTGTTCTTCTCCAAGCTCGTCAGCTACACAT TCCTTTTCTGGCTGCCGTTTTACATTCAACACTCTACTTCCATGGGCGCCAAGCTGTCGG CGGACGTATCGACGGTGTTCGATATCGGGGGCATTATTGGTGCAATTGCGGCCGGCATGC TGTCAGACGCATCCGCCATGCCGGCGACCACCTGCACGGGCATGCTGGCGATCGCTGCAC CGCTGCTACTTATCTACCGGTGCTGGGGCAGCGTTTCGCTGTCCGTCAACATACTGCTCC TGTTCGTGGTCGGGCTGATGGTGAACGGACCGTACGCACTGATTACCACCTCGGTCAGCG CCGAGCTGGGGCAGCACAGCTCGCTAAATGGCAACTCGAAGGCACTCGCCACCGTCACCG CCATCATCGATGGGACGGGCTCGATCGGGGCGGCCATCGGGCCCCTGCTGGCAGGCATGG TGTCCGGCTGGAACAACGTGTTCTACATGCTCGTCATATCGGACGTGCTCGCGCTGGCCA TGTTGCTGCGCATCAGCAGCAAGGAATGCTCCAGGCGCAACATCAACCGACGCTACAACG TGCGCATTGAGTGATAAGGGAAGGGGGTAGAGGAAGAAGGAAAGGAAGGAATTCGAATAC GCGCACAAAGGTCGCGGTGGGTTTCGTGCGCGTGTGTACAGTTTTTACAGCTAGCTCTCG ATATATACACAATATATGGTCTGATATTTTCGAGCACGAAACGCGGGGGAAAAGGGGGGA AAGAGGATACAGTGGGGTGGGTTTTGCTTTTTTTATCATTAATGTTTAGTGCGTTTTTTT TTTCGCCGCCTGCAGTCGATAAGTATAAATAAAAGCTCTTTAAAAACTGGGTGGTCTC



consensusID : consensus_4536#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 82
fasta sequence
                              [GATTCTTCGGCGCACTGCGCATTCCCGGCGTGATCGAGTTCTCGCTCAGCCTGTTCTTCTCCAAANTCNTCAGCTACACATT]

[+] EMBL BX623250             [GATTCTTCGGCGCACTGCGCATTCCCGGCGTGATCGAGTTCTCGCTCAGCCTGTTCTTCTCCAAANTCNTCAGCTACACATT]


>consensus_4536#1 GATTCTTCGGCGCACTGCGCATTCCCGGCGTGATCGAGTTCTCGCTCAGCCTGTTCTTCT CCAAANTCNTCAGCTACACATT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4536#0      ATGTGGAGGATTCGGGCGTTAGCGCGGAACAGGAAATCAACGAACGAACGCCCATCCTCG 60
consensus_4536#1      ------------------------------------------------------------
                                                                                  

consensus_4536#0      GCAGCATTAACCGTGCACCACCGCAGCACGATGCGATCGGATTTTTCGGCGCGCTGCGCA 120
consensus_4536#1      ---------------------------------------GATTCTTCGGCGCACTGCGCA 21
                                                             **** ******** *******

consensus_4536#0      TACCCGGCGTGATCGAGTTCTCGCTCAGCCTGTTCTTCTCCAAGCTCGTCAGCTACACAT 180
consensus_4536#1      TTCCCGGCGTGATCGAGTTCTCGCTCAGCCTGTTCTTCTCCAAANTCNTCAGCTACACAT 81
                      * *****************************************  ** ************

consensus_4536#0      TCCTTTTCTGGCTGCCGTTTTACATTCAACACTCTACTTCCATGGGCGCCAAGCTGTCGG 240
consensus_4536#1      T----------------------------------------------------------- 82
                      *                                                           

consensus_4536#0      CGGACGTATCGACGGTGTTCGATATCGGGGGCATTATTGGTGCAATTGCGGCCGGCATGC 300
consensus_4536#1      ------------------------------------------------------------
                                                                                  

consensus_4536#0      TGTCAGACGCATCCGCCATGCCGGCGACCACCTGCACGGGCATGCTGGCGATCGCTGCAC 360
consensus_4536#1      ------------------------------------------------------------
                                                                                  

consensus_4536#0      CGCTGCTACTTATCTACCGGTGCTGGGGCAGCGTTTCGCTGTCCGTCAACATACTGCTCC 420
consensus_4536#1      ------------------------------------------------------------
                                                                                  

consensus_4536#0      TGTTCGTGGTCGGGCTGATGGTGAACGGACCGTACGCACTGATTACCACCTCGGTCAGCG 480
consensus_4536#1      ------------------------------------------------------------
                                                                                  

consensus_4536#0      CCGAGCTGGGGCAGCACAGCTCGCTAAATGGCAACTCGAAGGCACTCGCCACCGTCACCG 540
consensus_4536#1      ------------------------------------------------------------
                                                                                  

consensus_4536#0      CCATCATCGATGGGACGGGCTCGATCGGGGCGGCCATCGGGCCCCTGCTGGCAGGCATGG 600
consensus_4536#1      ------------------------------------------------------------
                                                                                  

consensus_4536#0      TGTCCGGCTGGAACAACGTGTTCTACATGCTCGTCATATCGGACGTGCTCGCGCTGGCCA 660
consensus_4536#1      ------------------------------------------------------------
                                                                                  

consensus_4536#0      TGTTGCTGCGCATCAGCAGCAAGGAATGCTCCAGGCGCAACATCAACCGACGCTACAACG 720
consensus_4536#1      ------------------------------------------------------------
                                                                                  

consensus_4536#0      TGCGCATTGAGTGATAAGGGAAGGGGGTAGAGGAAGAAGGAAAGGAAGGAATTCGAATAC 780
consensus_4536#1      ------------------------------------------------------------
                                                                                  

consensus_4536#0      GCGCACAAAGGTCGCGGTGGGTTTCGTGCGCGTGTGTACAGTTTTTACAGCTAGCTCTCG 840
consensus_4536#1      ------------------------------------------------------------
                                                                                  

consensus_4536#0      ATATATACACAATATATGGTCTGATATTTTCGAGCACGAAACGCGGGGGAAAAGGGGGGA 900
consensus_4536#1      ------------------------------------------------------------
                                                                                  

consensus_4536#0      AAGAGGATACAGTGGGGTGGGTTTTGCTTTTTTTATCATTAATGTTTAGTGCGTTTTTTT 960
consensus_4536#1      ------------------------------------------------------------
                                                                                  

consensus_4536#0      TTTCGCCGCCTGCAGTCGATAAGTATAAATAAAAGCTCTTTAAAAACTGGGTGGTCTC 1018
consensus_4536#1      ----------------------------------------------------------
                                                                                




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)