These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4536#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1018 fasta sequence [ATGTGGAGGATTCGGGCGTTAGCGCGGAACAGGAAATCAACGAACGAACGCCCATCCTCGGCAGCATTAACCGTGCACCACCGCAGCACGATGCGATCGGATTTTTCGGCGCGCTGCGCATACCCGGCGTGATCGAGTTCTCGCTCAGCCTGTTCTTCTCCAAGCTCGTCAGCTACACATTCCTTTTCTGGCTGCCGTTTTACATTCAACACTCTACTTCCATGGGCGCCAAGCTGTCGGCGGACGTATCGACGGTGTTCGATATCGGGGGCATTATTGGTGCAATTGCGGCCGGCATGCTGTCAGACGCATCCGCCATGCCGGCGACCACCTGCACGGGCATGCTGGCGATCGCTGCACCGCTGCTACTTATCTACCGGTGCTGGGGCAGCGTTTCGCTGTCCGTCAACATACTGCTCCTGTTCGTGGTCGGGCTGATGGTGAACGGACCGTACGCACTGATTACCACCTCGGTCAGCGCCGAGCTGGGGCAGCACAGCTCGCTAAATGGCAACTCGAAGGCACTCGCCACCGTCACCGCCATCATCGATGGGACGGGCTCGATCGGGGCGGCCATCGGGCCCCTGCTGGCAGGCATGGTGTCCGGCTGGAACAACGTGTTCTACATGCTCGTCATATCGGACGTGCTCGCGCTGGCCATGTTGCTGCGCATCAGCAGCAAGGAATGCTCCAGGCGCAACATCAACCGACGCTACAACGTGCGCATTGAGTGATAAGGGAAGGGGGTAGAGGAAGAAGGAAAGGAAGGAATTCGAATACGCGCACAAAGGTCGCGGTGGGTTTCGTGCGCGTGTGTACAGTTTTTACAGCTAGCTCTCGATATATACACAATATATGGTCTGATATTTTCGAGCACGAAACGCGGGGGAAAAGGGGGGAAAGAGGATACAGTGGGGTGGGTTTTGCTTTTTTTATCATTAATGTTTAGTGCGTTTTTTTTTTCGCCGCCTGCAGTCGATAAGTATAAATAAAAGCTCTTTAAAAACTGGGTGGTCTC] [+] EMBL BX608832 [ATGTGGAGGATTCGGGCGTTAGCGCGGAACAGGAAATCAACGAACGAACGCCCATCCTCGGCAGCATTAACCGTGCACCACCGCAGCACGATGCGATCGGATTTTTCGGCGCGCTGCGCATACCCGGCGTGATCGAGTTCTCGCTCAGCCTGTTCTTCTCCAAGCTCGTCAGCTACACATTCCTTTTCTGGCTGCCGTTTTACATTCAACACTCTACTTCCATGGGCGCCAAGCTGTCGGCGGACGTATCGACGGTGTTCGATATCGGGGGCATTATTGGTGCAATTGCGGCCGGCATGCTGTCAGACGCATCCGCCATGCCGGCGACCACCTGCACGGGCATGCTGGCGATCGCTGCACCGCTGCTACTTATCTACCGGTGCTGGGGCAGCGTTTCGCTGTCCGTCAACATACTGCTCCTGTTCGTGGTCGGGCTGATGGTGAACGGACCGTACGCACTGATTACCACCTCGGTCAGCGCCGAGCTGGGGCAGCACAGCTCGCTAAATGGCAACTCGAAGGCACTCGCCACCGTCACCGCCATCATCGATGGGACGGGCTCGATCGGGGCGGCCATCGGGCCCCTGCTGGCAGGCATGGTGTCCGGCTG ] [-] EMBL BX624039 [ TGATGGTGAACGGACNGTACGCACTGATTACCACNTCGGTCAGCGCNGAGCTGGGGCAGCACAGCTCGCTAAATGGCAACTCGAAGGCACTCGCCACCGTCACCGCCATCATCGATGGGACGGGCTCGATCGGGGCGGCCATCGGGCCCCTGCTGGCAGGCATGGTGTCCGGCTGGAACAACGTGTTCTACATGCTCGTCATATCGGACGTGCTCGCGCTGGCCATGTTGCTGCGCATCAGCAGCAAGGAATGCTCCAGGCGCAACATCAACCGACGCTACAACGTGCGCATTGAGTGATAAGGGAAGGGGGTAGAGGAAGAAGGAAAGGAAGGAATTCGAATACGCGCACAAAGGTCGCGGTGGGTTTCGTGCGCGTGTGTACAGTTTTTACAGCTAGCTCTCGATATATACACAATATATGGTCTGATATTTTCGAGCACGAAACGCGGGGGAAAAGGGGGGAAAGAGGATACAGTGGGGTGGGTTTTGCTTTTTTTATCATTAATGTTTAGTGCGTTTTTTTTTTCGCCGCCTGCAGTCGATAAGTATAAATAAAAGCTCTTTAAAAACTGGGTGGTCTC] consensusID : consensus_4536#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 82 fasta sequence [GATTCTTCGGCGCACTGCGCATTCCCGGCGTGATCGAGTTCTCGCTCAGCCTGTTCTTCTCCAAANTCNTCAGCTACACATT] [+] EMBL BX623250 [GATTCTTCGGCGCACTGCGCATTCCCGGCGTGATCGAGTTCTCGCTCAGCCTGTTCTTCTCCAAANTCNTCAGCTACACATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4536#0 ATGTGGAGGATTCGGGCGTTAGCGCGGAACAGGAAATCAACGAACGAACGCCCATCCTCG 60 consensus_4536#1 ------------------------------------------------------------ consensus_4536#0 GCAGCATTAACCGTGCACCACCGCAGCACGATGCGATCGGATTTTTCGGCGCGCTGCGCA 120 consensus_4536#1 ---------------------------------------GATTCTTCGGCGCACTGCGCA 21 **** ******** ******* consensus_4536#0 TACCCGGCGTGATCGAGTTCTCGCTCAGCCTGTTCTTCTCCAAGCTCGTCAGCTACACAT 180 consensus_4536#1 TTCCCGGCGTGATCGAGTTCTCGCTCAGCCTGTTCTTCTCCAAANTCNTCAGCTACACAT 81 * ***************************************** ** ************ consensus_4536#0 TCCTTTTCTGGCTGCCGTTTTACATTCAACACTCTACTTCCATGGGCGCCAAGCTGTCGG 240 consensus_4536#1 T----------------------------------------------------------- 82 * consensus_4536#0 CGGACGTATCGACGGTGTTCGATATCGGGGGCATTATTGGTGCAATTGCGGCCGGCATGC 300 consensus_4536#1 ------------------------------------------------------------ consensus_4536#0 TGTCAGACGCATCCGCCATGCCGGCGACCACCTGCACGGGCATGCTGGCGATCGCTGCAC 360 consensus_4536#1 ------------------------------------------------------------ consensus_4536#0 CGCTGCTACTTATCTACCGGTGCTGGGGCAGCGTTTCGCTGTCCGTCAACATACTGCTCC 420 consensus_4536#1 ------------------------------------------------------------ consensus_4536#0 TGTTCGTGGTCGGGCTGATGGTGAACGGACCGTACGCACTGATTACCACCTCGGTCAGCG 480 consensus_4536#1 ------------------------------------------------------------ consensus_4536#0 CCGAGCTGGGGCAGCACAGCTCGCTAAATGGCAACTCGAAGGCACTCGCCACCGTCACCG 540 consensus_4536#1 ------------------------------------------------------------ consensus_4536#0 CCATCATCGATGGGACGGGCTCGATCGGGGCGGCCATCGGGCCCCTGCTGGCAGGCATGG 600 consensus_4536#1 ------------------------------------------------------------ consensus_4536#0 TGTCCGGCTGGAACAACGTGTTCTACATGCTCGTCATATCGGACGTGCTCGCGCTGGCCA 660 consensus_4536#1 ------------------------------------------------------------ consensus_4536#0 TGTTGCTGCGCATCAGCAGCAAGGAATGCTCCAGGCGCAACATCAACCGACGCTACAACG 720 consensus_4536#1 ------------------------------------------------------------ consensus_4536#0 TGCGCATTGAGTGATAAGGGAAGGGGGTAGAGGAAGAAGGAAAGGAAGGAATTCGAATAC 780 consensus_4536#1 ------------------------------------------------------------ consensus_4536#0 GCGCACAAAGGTCGCGGTGGGTTTCGTGCGCGTGTGTACAGTTTTTACAGCTAGCTCTCG 840 consensus_4536#1 ------------------------------------------------------------ consensus_4536#0 ATATATACACAATATATGGTCTGATATTTTCGAGCACGAAACGCGGGGGAAAAGGGGGGA 900 consensus_4536#1 ------------------------------------------------------------ consensus_4536#0 AAGAGGATACAGTGGGGTGGGTTTTGCTTTTTTTATCATTAATGTTTAGTGCGTTTTTTT 960 consensus_4536#1 ------------------------------------------------------------ consensus_4536#0 TTTCGCCGCCTGCAGTCGATAAGTATAAATAAAAGCTCTTTAAAAACTGGGTGGTCTC 1018 consensus_4536#1 ---------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||