|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4544#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 949 fasta sequence
[TGAATACGATTCCTTTATCAGTAAATGCGGTGGTTTTGACAATGCAGTAACGGATTTGGGAAGAAACCACATTTTATTTTGAAATAGATGAAGCGCATTTAGATGGAGCTTTGGATCGTTTTGCTAGTCTATTTACTGAACCGTTAATGCTTCGCGATTCCGTTTGCCGTGAACGTGATGCCGTTGAAAGCGAGTTTCAAACAAACAAGAATCGTTTTACTCCGGCTCGTGAACAATTGATAGCATCACTCGATGACGAATTGTATAAGGAACTCCATAAATTTCAAAGGCAACACTATTCAGCTCATCGTATGCACTTTGCTGTACAAGCGCGCATGAGCCTTGACGAGCTCGAATCCCTAACTGTGAAGCATTTTTCAAGCATACCTTCCAACCAACTACCAGCTAATAACTTGTCAGTATTGTTTAACGAAAAAAATGCTTTTCGGGATGAATTCTACCGAAAACTTTTGATTGTGAAACCAGTCTCAGATGTGTGTCAACTAGACATAACGTGGTGTTTACCACCTAGCATAAAAGATTACCACGTGAAACCAATTGATTACATTTCCTATATTATGGGCTATGAGGGTAAAAATAGTTTAACGAGTTATCTACGTAAGCATTCATTGGCCCTAGATGTACAAACTGGAGCAAATTTTGGATTTTGAAAAAATTCGCTTTACACGCTGTTCGGAGTATCCATCACTATGACCGATCGTGGATTAGAAAATGTTGAGCAAATTTTAAAAGCTGTATACTCGTTTGTACGATTGCTAAAGCGCGAAGGACCTGTTGAATGGATTTACAAAGAACTGCAAGAATTGGAAGCAACATCTTTTCGATACCGTAAAGAAAAAGAAGCTAGTGATAATGTGGAAGAATTAGTTGTCAACATGCGTTATTATCCTTCTGAACATATTATCACTGGCTCAGAATTATATTTCAA]
[+] EMBL BX605531 [TGAATACGATTCCTTTATCAGTAAATGCGGTGGTTTTGACAATGCAGTAACGGATTTGGGAAGAAACCACATTTTATTTTGAAATAGATGAAGCGCATTTAGATGGAGCTTTGGATCGTTTTGCTAGTCTATTTACTGAACCGTTAATGCTTCGCGATTCCGTTTGCCGTGAACGTGATGCCGTTGAAAGCGAGTTTCAAACAAACAAGAATCGTTTTACTCCGGCTCGTGAACAATTGATAGCATCACTCGATGACGAATTGTATAAGGAACTCCATAAATTTCAAAGGCAACACTATTCAGCTCATCGTATGCACTTTGCTGTACAAGCGCGCATGAGCCTTGACGAGCTCGAATCCCTAACTGTGAAGCATTTTTCAAGCATACCTTCCAACCAACTACCAGCTAATAACTTGTCAGTATTGTTTAACGAAAAAAATGCTTTTCGGGATGAATTCTACCGAAAACTTTTGATTGTGAAACCAGTCTCAGATGTGTGTCAACTAGACATAACGTGGTGTTTACCACCTAGCATAAAAGATTACCACGTGAAACCAATTGATTACATTTCCTATATTATGGGCTATGAGGGTAAAAATAGTTTAACGAGTTATCTACGTAAGCATTCATTGGCCCTAGATGTACAAACTGGAGCAAATTTTGGATTTTGAAAAAATTCGCTTTACACGCTGTTCGGAGTATCCATCACTATGACCGATCGTGGATTA ]
[+] EMBL BM641459 [ ccgGCCTTGACGAGCTCGAATCCCTAACTGTGAAGCATTTTTCAAGCATACCTTCCAACCAACTACCAGCTAATAACTTGTCAGTATTGTTTAACGAAAAAAATGCTTTTCGGGATGAATTCTACCGAAAACTTTTGATTGTGAAACCAGTCTCAGATGTGTGTCAACTAGACATAACGTGGTGTTTACCACCTAGCATAAAAGATTACCACGTGAAACCAATTGATTACATTTCCTATATTATGGGCTATGAGGGTAAAAATAGTTTAACGAGTTATCTACGTAAGCATTCATTGGCCCTAGATGTACAAACTGGAGCAAATTTTGGATTTGAAAAAAATTCGCTTTACACGCTGTTCGGAGTATCCATCACTATGACCGATCGTGGATTAGAAAATGTTGAGCAAATTTTAAAAGCTGTATACTCGTTTGTACGATTGCTAAAGCGCGAAGGACCTGTTGAATGGATTTACAAAGAACTGCAAGAATTGGAAGCAACATCTTTTCGATACCGTAAAGAAAAAGAAGCTAGTGATAATGTGGAAGAATTAGTTGTCAACATGCGTTATTATCCTTCTGAACATATTATCACTGGCTCAGAATTATATTTCAA]
consensusID : consensus_4544#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 578 fasta sequence
[CCGCCCACGCGTCCGAGGACCTGTTGAATGGATTTACAAAGAACTGCAAGAATTGGAAGCAACATCTTTTCGATACCGTAAAGAAAAAGAAGCTAGTGATAATGTGGAAGAATTAGTTGTCAACATGCGTTATTATCCTTCTGAACATATTATCACTGGCTCAGAATTATATTTCAAATACGACCCGAACGAGATATGGACGGTTATCAACAACTTAAACAAGCCACAGTTTAATCTGATGATATCGTCTACAAAACCTTATAGAAATGTAACTTACAATCGTACTGAGGCTTGGTTTGGAACGGAATATGTCGAGTTAGATGTTCCAAAAGAATGGCAACTTTTATGGGAATTGGCGGAACCAATGCCAGAAATACAAATTCAAGAGAAAAACCAATATATTTCGACCAATTTTACGATATTAGCGGATGTAACAGAAAATTTAGAGGTTCCACCTCACCCAGAGAAGATTTTCGAAAACGATTTATGTGAACTATGGTTCCGCCAAGATAATAAATTCCGGCTTCCTTCAGCACTAATGTATTTTTACATAATTTCTCCGCTACCATTCAATAATC]
[+] EMBL BM643939 [CCGCCCACGCGTCCGAGGACCTGTTGAATGGATTTACAAAGAACTGCAAGAATTGGAAGCAACATCTTTTCGATACCGTAAAGAAAAAGAAGCTAGTGATAATGTGGAAGAATTAGTTGTCAACATGCGTTATTATCCTTCTGAACATATTATCACTGGCTCAGAATTATATTTCAAATACGACCCGAACGAGATATGGACGGTTATCAACAACTTAAACAAGCCACAGTTTAATCTGATGATATCGTCTACAAAACCTTATAGAAATGTAACTTACAATCGTACTGAGGCTTGGTTTGGAACGGAATATGTCGAGTTAGATGTTCCAAAAGAATGGCAACTTTTATGGGAATTGGCGGAACCAATGCCAGAAATACAAATTCAAGAGAAAAACCAATATATTTCGACCAATTTTACGATATTAGCGGATGTAACAGAAAATTTAGAGGTTCCACCTCACCCAGAGAAGATTTTCGAAAACGATTTATGTGAACTATGGTTCCGCCAAGATAATAAATTCCGGCTTCCTTCAGCACTAATGTATTTTTACATAATTTCTCCGCTACCATTCAATAATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4544#0 TGAATACGATTCCTTTATCAGTAAATGCGGTGGTT---TTGACAATGCAGTAACGGATTT 57
consensus_4544#1 ------CCGCCCACGCGTCCGAGGACCTGTTGAATGGATTTACAAAGAACTGCAAGAATT 54
* * ** * * * ** * ** **** * * * ** **
consensus_4544#0 GGGAAGAAACCACATTTTATTTTGAAATAGATGAAGCGCATTTAGATGGAGCTTTGGATC 117
consensus_4544#1 GGAAGCAACATCTTTTCGATACCG---TAAAGAAAAAGAAGCTAG-TGATAATGTGGAAG 110
** * ** ** ** * ** * ** * * *** ** * ****
consensus_4544#0 GTTTTGCTAGTCTATTTACTGAACCGTTAATGCTTCGCGATTCCGTTTGCCGTGAACGTG 177
consensus_4544#1 AATTAGTT-GTCAACATGC---GTTATTA-TCCTTCTGAACATATTATCACTGGCTCAGA 165
** * * *** * * * *** * **** * * * * * *
consensus_4544#0 ATGCCGTTGAAAGCGAGTTTCAAACAAACAAGAATCGTTTTACTCCGGCTCGTGAACAAT 237
consensus_4544#1 ATTATATTTCAAATACGACCCGAACGAGATATGGACGGTTATCAACAACT--TAAACAAG 223
** ** ** * * *** * * ** ** * * ** * *****
consensus_4544#0 TGATAGCATCACTCGATGACGAATTGTATAAGGAACTCCATAAATTTCAAAGGCAACACT 297
consensus_4544#1 CCACAGTTTAATCTGATGAT--ATCGTCTACAAAACCTTATAGA----------AATGTA 271
* ** * * ***** ** ** ** *** *** * **
consensus_4544#0 ATTCAGCTCATCGTA-TGCACTTTGCTGTACAAGCGCGCATGAGCCTTGACGAGCTCGAA 356
consensus_4544#1 ACTTA--CAATCGTACTGAGGCTTGGTTTGGAA-------CGGAATATGTCGAGTTAGAT 322
* * * ****** ** *** * * ** * ** **** * **
consensus_4544#0 TCCCTAACTGTGAAGCATTTTTCAAGCATACCTTCCAACCAACTACCAGCTAATAACTTG 416
consensus_4544#1 GTTCCAAAAGAATGGCAACTTTTATGGGAATTGGCGGAACCAATGCCAGA-AATA----- 376
* ** * *** *** * * * * * * * * **** ****
consensus_4544#0 TCAGTATTGTTTAACGAAAAAAATGCTTTTCGGGATGAATTCTACCGAAAACTTTTGATT 476
consensus_4544#1 -CAA-ATTCAAGAGAAAAACCAATATATTTC--GACCAATTTTAC--GATATTAGCGGAT 430
** *** * *** *** **** ** **** *** * * * * *
consensus_4544#0 GTGAAACCAGTCTCAGATGT---GTGTCAACTAGACATAACGTGGTGTTTACCACCTAGC 533
consensus_4544#1 GTAACAGAAAATTTAGAGGTTCCACCTCACCCAGAGAAGATTTT-CGAAAACGATTTA-T 488
** * * * * *** ** *** * *** * * * * ** * **
consensus_4544#0 ATAAAAGATTACCACGTGAAACCAATTGATTACATTTCCTATATTATGGGCTATGAGGGT 593
consensus_4544#1 GTGAACTATGGTTCCGCCAAGATAATAAATTCCGGCTTCCTTC------------AGCAC 536
* ** ** ** ** *** *** * * * * **
consensus_4544#0 AAAAATAGTTTAACGAGTTATCTACGTAAGCATTCATTGGCCCTAGATGTACAAACTGGA 653
consensus_4544#1 TAATGTATTTTTACATAATTTCTCCGCTACCATTCAATAATC------------------ 578
** ** *** ** * *** ** * ****** * *
consensus_4544#0 GCAAATTTTGGATTTTGAAAAAATTCGCTTTACACGCTGTTCGGAGTATCCATCACTATG 713
consensus_4544#1 ------------------------------------------------------------
consensus_4544#0 ACCGATCGTGGATTAGAAAATGTTGAGCAAATTTTAAAAGCTGTATACTCGTTTGTACGA 773
consensus_4544#1 ------------------------------------------------------------
consensus_4544#0 TTGCTAAAGCGCGAAGGACCTGTTGAATGGATTTACAAAGAACTGCAAGAATTGGAAGCA 833
consensus_4544#1 ------------------------------------------------------------
consensus_4544#0 ACATCTTTTCGATACCGTAAAGAAAAAGAAGCTAGTGATAATGTGGAAGAATTAGTTGTC 893
consensus_4544#1 ------------------------------------------------------------
consensus_4544#0 AACATGCGTTATTATCCTTCTGAACATATTATCACTGGCTCAGAATTATATTTCAA 949
consensus_4544#1 --------------------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||