cluster # 4546

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Anopheles gambiae
cluster # 4546 cluster # 4546 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4546#0 length = 917 sequences # 2

consensus_4546#1 length = 712 sequences # 1

consensusID : consensus_4546#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 917
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGCTAAATTAAGCCATTTAGGCTTATTTTTGTAATAGTTTGAAATAAAAGACACTTTACTCGTTCTACGTGAGAAGTTTCCCTGTTATGGTGCTCGGTGTTGTTGCGGCAAGGCGAAGGAATTGAATGCGATAAAGGAAAACGATTGCGGATTTTGGCGCTGGTGTCACATCATCAAGATGAACAAGCTCGAGCGCACATTGCAGCTGTTGGACGAATCCACTGTCCAATCGCCCAGCGGATTGCTGCGGTCGAAGGATTCGGTGCGCTACTTGCAGCAGCAGGCCCGCGAGGAGCAGCGACAGCTGGGAGCGTCCGGGCTGGGCGAAAGTATGATGCTGGATTCCGTGCAGGATGTGGGCCTGTATCGAACGGTGGGCGAACTGGAACCGGCCGGAGGCGGACTGTCCGGCAGTCAGCTTAGCTTGGTCGCTGGCAGCACGGTAAGCTACACGAATGCAAACGTCCGGGAAGCGAGCAAGCAGTTGTGCGAAGAGTTCCTGCAGGTGCTGCAACGCTACAGCAACGCCTCGGACGTGTTCGAGGCGACCGAGGAGCTGGTGAAATCGTTGGACGACACGCTGGTACAGCTGAACAATGCGTCCAAGCAGCTGCTACCTACTGGTCGGGAGCGCCGGCTGCACGCGGAAGAGATGTGGCTGAACGCGGAACGGGATACGTGGCGGCTGATGATCTGCCTGTACCGCGATCGGTTGATAACGCAGAAGCAGGACAGCGAGATGGACGATTTGCCGCTGGTGAACAGTGAGCAGACCATCATCTCCCATCTGTACGGTGGCAATGCGAATCTGCGCGAGTACCAGATCATTGTGGACTGGCTGGAGCAGATGGCGCTGCGGCAGCAACAGACCGAGCTGGGCCACTACATGAAC]

[+] EMBL BM585733             [CCGCCCACGCGTCCGCCCACGCGTCCGCTAAATTAAGCCATTTAGGCTTATTTTTGTAATAGTTTGAAATAAAAGACACTTTACTCGTTCTACGTGAGAAGTTTCCCTGTTATGGTGCTCGGTGTTGTTGCGGCAAGGCGAAGGAATTGAATGCGATAAAGGAAAACGATTGCGGATTTTGGCGCTGGTGTCACATCATCAAGATGAACAAGCTCGAGCGCACATTGCAGCTGTTGGACGAATCCACTGTCCAATCGCCCAGCGGATTGCTGCGGTCGAAGGATTCGGTGCGCTACTTGCAGCAGCAGGCCCGCGAGGAGCAGCGACAGCTGGGAGCGTCCGGGCTGGGCGAAAGTATGATGCTGGATTCCGTGCAGGATGTGGGCCTGTATCGAACGGTGGGCGAACTGGAACCGGCCGGAGGCGGACTGTCCGGCAGTCAGCTTAGCTTGGTCGCTGGCAGCACGGTAAGCTACACGAATGCAAACGTCCGGGAAGCGAGCAAGCAGTTGTGCGAAGAGTTCCTGCAGGTGCTGCAACGCTACAGCAACGCCTCGGACGTGTTCGAGGCGACCGAGGAGCTGGTGAAATCGTTGGACGACACGCTGGTA                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BM602081             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ccGGCAGCACGGTAAGCTACACGAATGCAAACGTCCGGGAAGCGAGCAAGCAGTTGTGCGAAGAGTTCCTGCAGGTGCTGCAACGCTACAGCAACGCCTCGGACGTGTTCGAGGCGACCGAGGAGCTGGTGAAATCGTTGGACGACACGCTGGTACAGCTGAACAATGCGTCCAAGCAGCTGCTACCTACTGGTCGGGAGCGCCGGCTGCACGCGGAAGAGATGTGGCTGAACGCGGAACGGGATACGTGGCGGCTGATGATCTGCCTGTACCGCGATCGGTTGATAACGCAGAAGCAGGACAGCGAGATGGACGATTTGCCGCTGGTGAACAGTGAGCAGACCATCATCTCCCATCTGTACGGTGGCAATGCGAATCTGCGCGAGTACCAGATCATTGTGGACTGGCTGGAGCAGATGGCGCTGCGGCAGCAACAGACCGAGCTGGGCCACTACATGAAC]




>consensus_4546#0
CCGCCCACGCGTCCGCCCACGCGTCCGCTAAATTAAGCCATTTAGGCTTATTTTTGTAAT
AGTTTGAAATAAAAGACACTTTACTCGTTCTACGTGAGAAGTTTCCCTGTTATGGTGCTC
GGTGTTGTTGCGGCAAGGCGAAGGAATTGAATGCGATAAAGGAAAACGATTGCGGATTTT
GGCGCTGGTGTCACATCATCAAGATGAACAAGCTCGAGCGCACATTGCAGCTGTTGGACG
AATCCACTGTCCAATCGCCCAGCGGATTGCTGCGGTCGAAGGATTCGGTGCGCTACTTGC
AGCAGCAGGCCCGCGAGGAGCAGCGACAGCTGGGAGCGTCCGGGCTGGGCGAAAGTATGA
TGCTGGATTCCGTGCAGGATGTGGGCCTGTATCGAACGGTGGGCGAACTGGAACCGGCCG
GAGGCGGACTGTCCGGCAGTCAGCTTAGCTTGGTCGCTGGCAGCACGGTAAGCTACACGA
ATGCAAACGTCCGGGAAGCGAGCAAGCAGTTGTGCGAAGAGTTCCTGCAGGTGCTGCAAC
GCTACAGCAACGCCTCGGACGTGTTCGAGGCGACCGAGGAGCTGGTGAAATCGTTGGACG
ACACGCTGGTACAGCTGAACAATGCGTCCAAGCAGCTGCTACCTACTGGTCGGGAGCGCC
GGCTGCACGCGGAAGAGATGTGGCTGAACGCGGAACGGGATACGTGGCGGCTGATGATCT
GCCTGTACCGCGATCGGTTGATAACGCAGAAGCAGGACAGCGAGATGGACGATTTGCCGC
TGGTGAACAGTGAGCAGACCATCATCTCCCATCTGTACGGTGGCAATGCGAATCTGCGCG
AGTACCAGATCATTGTGGACTGGCTGGAGCAGATGGCGCTGCGGCAGCAACAGACCGAGC
TGGGCCACTACATGAAC

consensusID : consensus_4546#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 712
fasta sequence

                              [CCGGCTAGCTTGGCGATCTCCCGGTTTCGTTTGCATTGGCCGCACTAAATTAAGCCATTTAGGCTTATTTTTGTAATAGTTTGAAATAAAAGACACTTTACTCGTTCTACGTGAGAAATTTCCCTGTTATGGTGCTCGGTGTTGTTGCGGTAAGGCGAAGGAATTGAATGCGATAAAGGAAAACGATTGCGGTTTTTGGCGCTGGTGTCACATCATCAAGATGAACAAGCTCGAGCGCACATTGCAGCTGTTGGACGAATCCACTGTCCAATCGCCCAGCGGATTGCTGCGGTCGAAGGATTCGGTGCGCTACTTGCAGCAGCAGGCCCGCGAGGAACAGCGACAGCTGGGAGCGTCCGGGCTGGGCGAAAGTATGATGCTGGATTCCGTGCAGGATGTGGGCCTGTATCGAACGGTGGGCGAATTGGAACCGGCCGGAGGTGGACTGTCCGGCAGTCAGCTTAGCTTGGTCGCTGGCAGCACGGTAAGCTACACGAATGCAAACGTGCGGGAAGCGAGCAAACAGCTGTGCGAAGAGTTTCTGCAGGTGCTACAGCGCTACAGCAACGCCTCGGACGTGTTCGAGGCGACCGAGGAGCTGGTGAAATCGTTGGACGACACGCTGGTACAGCGAAAATCTGCTGCTGGCTGATGTGCTCAGCTCGGAAACGCGCAAGCTGTACAGCGTCTTCCCCAAGCACAAGCTGGCGGA]

[+] EMBL BM575058             [CCGGCTAGCTTGGCGATCTCCCGGTTTCGTTTGCATTGGCCGCACTAAATTAAGCCATTTAGGCTTATTTTTGTAATAGTTTGAAATAAAAGACACTTTACTCGTTCTACGTGAGAAATTTCCCTGTTATGGTGCTCGGTGTTGTTGCGGTAAGGCGAAGGAATTGAATGCGATAAAGGAAAACGATTGCGGTTTTTGGCGCTGGTGTCACATCATCAAGATGAACAAGCTCGAGCGCACATTGCAGCTGTTGGACGAATCCACTGTCCAATCGCCCAGCGGATTGCTGCGGTCGAAGGATTCGGTGCGCTACTTGCAGCAGCAGGCCCGCGAGGAACAGCGACAGCTGGGAGCGTCCGGGCTGGGCGAAAGTATGATGCTGGATTCCGTGCAGGATGTGGGCCTGTATCGAACGGTGGGCGAATTGGAACCGGCCGGAGGTGGACTGTCCGGCAGTCAGCTTAGCTTGGTCGCTGGCAGCACGGTAAGCTACACGAATGCAAACGTGCGGGAAGCGAGCAAACAGCTGTGCGAAGAGTTTCTGCAGGTGCTACAGCGCTACAGCAACGCCTCGGACGTGTTCGAGGCGACCGAGGAGCTGGTGAAATCGTTGGACGACACGCTGGTACAGCGAAAATCTGCTGCTGGCTGATGTGCTCAGCTCGGAAACGCGCAAGCTGTACAGCGTCTTCCCCAAGCACAAGCTGGCGGA]




>consensus_4546#1
CCGGCTAGCTTGGCGATCTCCCGGTTTCGTTTGCATTGGCCGCACTAAATTAAGCCATTT
AGGCTTATTTTTGTAATAGTTTGAAATAAAAGACACTTTACTCGTTCTACGTGAGAAATT
TCCCTGTTATGGTGCTCGGTGTTGTTGCGGTAAGGCGAAGGAATTGAATGCGATAAAGGA
AAACGATTGCGGTTTTTGGCGCTGGTGTCACATCATCAAGATGAACAAGCTCGAGCGCAC
ATTGCAGCTGTTGGACGAATCCACTGTCCAATCGCCCAGCGGATTGCTGCGGTCGAAGGA
TTCGGTGCGCTACTTGCAGCAGCAGGCCCGCGAGGAACAGCGACAGCTGGGAGCGTCCGG
GCTGGGCGAAAGTATGATGCTGGATTCCGTGCAGGATGTGGGCCTGTATCGAACGGTGGG
CGAATTGGAACCGGCCGGAGGTGGACTGTCCGGCAGTCAGCTTAGCTTGGTCGCTGGCAG
CACGGTAAGCTACACGAATGCAAACGTGCGGGAAGCGAGCAAACAGCTGTGCGAAGAGTT
TCTGCAGGTGCTACAGCGCTACAGCAACGCCTCGGACGTGTTCGAGGCGACCGAGGAGCT
GGTGAAATCGTTGGACGACACGCTGGTACAGCGAAAATCTGCTGCTGGCTGATGTGCTCA
GCTCGGAAACGCGCAAGCTGTACAGCGTCTTCCCCAAGCACAAGCTGGCGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4546#0      --------------CCGCCCACGCGTCCGCCCACGC-GTCCGC--TAAATTAAGCCATTT 43
consensus_4546#1      CCGGCTAGCTTGGCGATCTCCCGGTTTCGTTTGCATTGGCCGCACTAAATTAAGCCATTT 60
                                       * * **  * **    *   * ****  ***************

consensus_4546#0      AGGCTTATTTTTGTAATAGTTTGAAATAAAAGACACTTTACTCGTTCTACGTGAGAAGTT 103
consensus_4546#1      AGGCTTATTTTTGTAATAGTTTGAAATAAAAGACACTTTACTCGTTCTACGTGAGAAATT 120
                      ********************************************************* **

consensus_4546#0      TCCCTGTTATGGTGCTCGGTGTTGTTGCGGCAAGGCGAAGGAATTGAATGCGATAAAGGA 163
consensus_4546#1      TCCCTGTTATGGTGCTCGGTGTTGTTGCGGTAAGGCGAAGGAATTGAATGCGATAAAGGA 180
                      ****************************** *****************************

consensus_4546#0      AAACGATTGCGGATTTTGGCGCTGGTGTCACATCATCAAGATGAACAAGCTCGAGCGCAC 223
consensus_4546#1      AAACGATTGCGGTTTTTGGCGCTGGTGTCACATCATCAAGATGAACAAGCTCGAGCGCAC 240
                      ************ ***********************************************

consensus_4546#0      ATTGCAGCTGTTGGACGAATCCACTGTCCAATCGCCCAGCGGATTGCTGCGGTCGAAGGA 283
consensus_4546#1      ATTGCAGCTGTTGGACGAATCCACTGTCCAATCGCCCAGCGGATTGCTGCGGTCGAAGGA 300
                      ************************************************************

consensus_4546#0      TTCGGTGCGCTACTTGCAGCAGCAGGCCCGCGAGGAGCAGCGACAGCTGGGAGCGTCCGG 343
consensus_4546#1      TTCGGTGCGCTACTTGCAGCAGCAGGCCCGCGAGGAACAGCGACAGCTGGGAGCGTCCGG 360
                      ************************************ ***********************

consensus_4546#0      GCTGGGCGAAAGTATGATGCTGGATTCCGTGCAGGATGTGGGCCTGTATCGAACGGTGGG 403
consensus_4546#1      GCTGGGCGAAAGTATGATGCTGGATTCCGTGCAGGATGTGGGCCTGTATCGAACGGTGGG 420
                      ************************************************************

consensus_4546#0      CGAACTGGAACCGGCCGGAGGCGGACTGTCCGGCAGTCAGCTTAGCTTGGTCGCTGGCAG 463
consensus_4546#1      CGAATTGGAACCGGCCGGAGGTGGACTGTCCGGCAGTCAGCTTAGCTTGGTCGCTGGCAG 480
                      **** **************** **************************************

consensus_4546#0      CACGGTAAGCTACACGAATGCAAACGTCCGGGAAGCGAGCAAGCAGTTGTGCGAAGAGTT 523
consensus_4546#1      CACGGTAAGCTACACGAATGCAAACGTGCGGGAAGCGAGCAAACAGCTGTGCGAAGAGTT 540
                      *************************** ************** *** *************

consensus_4546#0      CCTGCAGGTGCTGCAACGCTACAGCAACGCCTCGGACGTGTTCGAGGCGACCGAGGAGCT 583
consensus_4546#1      TCTGCAGGTGCTACAGCGCTACAGCAACGCCTCGGACGTGTTCGAGGCGACCGAGGAGCT 600
                       *********** ** ********************************************

consensus_4546#0      GGTGAAATCGTTGGACGACACGCTGGTACAGCTGAACAATGCGTCCAAGCAGCTGCTACC 643
consensus_4546#1      GGTGAAATCGTTGGACGACACGCTGGTACAGCGAAAATCTGCTGCTG----GCTGATGTG 656
                      ********************************  **   ***  *      **** *   

consensus_4546#0      TACTGGTCGGGA--GCGCCGGCTGCACGCGGAAGAGATGTGGCTGAACGCGGAACGGGAT 701
consensus_4546#1      CTCAGCTCGGAAACGCGCAAGCTGTAC-----AGCGTCTTCCCCAAGCACAAGCTGGCGG 711
                        * * **** *  ****  **** **     ** *   *  *  * * *     **   

consensus_4546#0      ACGTGGCGGCTGATGATCTGCCTGTACCGCGATCGGTTGATAACGCAGAAGCAGGACAGC 761
consensus_4546#1      A----------------------------------------------------------- 712
                      *                                                           

consensus_4546#0      GAGATGGACGATTTGCCGCTGGTGAACAGTGAGCAGACCATCATCTCCCATCTGTACGGT 821
consensus_4546#1      ------------------------------------------------------------
                                                                                  

consensus_4546#0      GGCAATGCGAATCTGCGCGAGTACCAGATCATTGTGGACTGGCTGGAGCAGATGGCGCTG 881
consensus_4546#1      ------------------------------------------------------------
                                                                                  

consensus_4546#0      CGGCAGCAACAGACCGAGCTGGGCCACTACATGAAC 917
consensus_4546#1      ------------------------------------