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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4567#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 985 fasta sequence
[GTAACTGCTGCTGCTGCTGCTGCTTCAAAAACAAACGCTGACTGACAGTGCCGTACACTAACGGTCATAGTGTTGGTGTGTGTCCCCCCCCCCACCCCGATTCTTTTTACAGCCTCATTTCAATTCTCTTGTTCTCTCTTCCTTTCTTCACACCTCCAGCAGAGAAGTTTTGTGTGCAGATTCGTCGAGAAAACGTTCGTTTTACATCACACAATCCTTCACATTCGCCTCCAAAGTCCTTATTCGCCGCAGCGCCGGATTTCGCTGTTTCGCCTTGCCGCCTTCTGTGTCCTTTTTCTCTTGCTGTGACTGCCTTATTATCCTGTCTCGACAGCGTACGGTCGTCGCCTGCCCTGTTTCCGATATCCGCGTACAAGCCGATACACGTGTGTTTTTATGTTGCTGCTGCTGCTGCCGCTTCTGCAACGGGATGTTGATGTCTACTTATACTGCTTCTTTGCAGTATGTCCTCACACTACTGCTGCGGGAACACCATTTTTGCATACATCGAGCGGGCACGGCCGAAGAGGAAGAAGAAGATGGTGGTAGGAATAAGGAAAAAGACACCACAGCACAATCGAATATCCTTCTATTCACTGCACTGGCACATTTTTTATTTTTGCTTCTTTCCCACGGGGTGTTCGAAGGGGGGAGGAAGAAAAGGAAACCCTCGTCGCTGTGTGGCACCACACTCAGGATACACTTTTATCGCATACAAAGCGACACAAAAAGAACAAAAAAATATAAAACAACACTTTTCCCGACTTTTTTTTCGGAGCGAGCTTTTTGCTTCACTTCAAACACTGCACATTGCTCCGAATTTTCTCCTGCTTCAACTTATTTTTCCCATTTCTCGACAGGCTTGGTTTTCACACCCTCTTTTTGTACCTTTTGCGAAGATTGTTTTGTGAGCGTTTGTACCGAAAACGGCGAGCAAACACAGGAGCAAGACCCTCAAACACAACCACACCACACCGTTCTGTTC]
[+] EMBL CNS09KJC [GTAACTGCTGCTGCTGCTGCTGCTTCAAAAACAAACGCTGACTGACAGTGCCGTACACTAACGGTCATAGTGTTGGTGTGTGTCCCCCCCCCCACCCCGATTCTTTTTACAGCCTCATTTCAATTCTCTTGTTCTCTCTTCCTTTCTTCACACCTCCAGCAGAGAAGTTTTGTGTGCAGATTCGTCGAGAAAACGTTCGTTTTACATCACACAATCCTTCACATTCGCCTCCAAAGTCCTTATTCGCCGCAGCGCCGGATTTCGCTGTTTCGCCTTGCCGCCTTCTGTGTCCTTTTTCTCTTGCTGTGACTGCCTTATTATCCTGTCTCGACAGCGTACGGTCGTCGCCTGCCCTGTTTCCGATATCCGCGTACAAGCCGATACACGTGTGTTTTTATGTTGCTGCTGCTGCTGCCGCTTCTGCAACGGGATGTTGATGTCTACTTATACTGCTTCTTTGCAGTATGTCCTCACACTACTGCTGCGGGAACACCATTTTTGCATACATCGAGCGGGCACGGCCGAAGAGGAAGAAGAAGATGGTGGTAGGAATAAGGAAAAAGACACCACAGCACAATCGAATATCCTTCTATTCACTGCACTGGCACATTTTTTATTTTTGCTTCTTTCCCACGGGGTGTTCGAAGGGGGGAGGAAGAAAAGGAAACCCTCGTCGCTGTGTGGCACCACACTCAGGATACACTTTTATCGCATACAAAGCGACACAAAAAGAACAAAAAAATATAAAACAACACTTTTCCCGACTTTTTTTTCGGAGCGAGCTTTTTGCTTCACTTCAAACACTGCACATTGCTCCGAATTTTCTCCTGCTTCAACTTATTTTTCCCATTTCTCGACAGGCTTGGTTTTCACACCCTCTTTTTGTACCTTTTGCGAAGATTGTTTTGTGAGCGTTTGTACCGAAAACGGCGAGCAAACACAGGAGCAAGACCCTCAAACACAACCACACCACACCGTTCTGTTC]
consensusID : consensus_4567#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 925 fasta sequence
[GGTGTGTGTCTGAATTCTCGATGCGATTCTTTTTACAGCCTCATTTCAATTCTCTTGTTCTCTCTTCCTTTCTTCACACCTCCAGCAGAGAAGTTTTGTGTGCAGATTCGTCGAGAAAACGTTCGTTTTACATCACACAATCCTTCACATTCGCCTCCAAAGTCCTTATTCGCCGCAGCGCCGGATTTCGCTGTTTCGCCTTGCCGCCTTCTGTGTCCTTTTTCTCTTGCTGTGACTGCCTTATTATCCTGTCTCGACAGCGTACGGTCGTCGCCTGCCCTGTTTCCGATATCCGCGTACAAGCCGATACACGTGTGTGTGTATGTTGCTGCTGCTGCTGCCGCTTCTGCAACGGGATGTTGATGTCTACTTATACTGCTTCTTTGCAGTATGTCCTCACACTACTGCTGCGGAACACCATTTTTGCATACATCGAGCGGGCACGGCCGAAGAGGAAGAAGAAGATGGTGGTAGGAATAAGGAAAAAGACACCACAGCACAATCGAATATCCTTCTATTCACTGCACTGGCACATTTTTTATTTTTGCTTCTTTCCCACGGGGTGTTCGAAGGGGGGAGGAAGAAAAGGAAACCCTCGTCGCTGTGTGGCACCACACTCAGGATACACTTTTATCGCATACAAAGCGACACAAAAAGAACAGAAAAATATAAAACAACACTTTTCCCGACTTTTTTTTCGGAGCGAGCTTTTTGCTTCACTTCAAACACTGCACATTGCTCCGAATTTTCTCCTGCTTCAACTTATTTTTCCCATTTCTCGACAGGCTTGGTTTTCACACCCTCTTTTGTACCTTTTGCGAAGATTGTTTTGTGAGCGTTTGTACCGAAAACGGCGAGCAAACACAGGAGCAAGACCCTCAAACACAACCAGCGGGGGGGGGCGGGGTGTTCTGGCAGCTGGGTG]
[-] EMBL CNS09KJB [GGTGTGTGTCTGAATTCTCGATGCGATTCTTTTTACAGCCTCATTTCAATTCTCTTGTTCTCTCTTCCTTTCTTCACACCTCCAGCAGAGAAGTTTTGTGTGCAGATTCGTCGAGAAAACGTTCGTTTTACATCACACAATCCTTCACATTCGCCTCCAAAGTCCTTATTCGCCGCAGCGCCGGATTTCGCTGTTTCGCCTTGCCGCCTTCTGTGTCCTTTTTCTCTTGCTGTGACTGCCTTATTATCCTGTCTCGACAGCGTACGGTCGTCGCCTGCCCTGTTTCCGATATCCGCGTACAAGCCGATACACGTGTGTGTGTATGTTGCTGCTGCTGCTGCCGCTTCTGCAACGGGATGTTGATGTCTACTTATACTGCTTCTTTGCAGTATGTCCTCACACTACTGCTGCGGAACACCATTTTTGCATACATCGAGCGGGCACGGCCGAAGAGGAAGAAGAAGATGGTGGTAGGAATAAGGAAAAAGACACCACAGCACAATCGAATATCCTTCTATTCACTGCACTGGCACATTTTTTATTTTTGCTTCTTTCCCACGGGGTGTTCGAAGGGGGGAGGAAGAAAAGGAAACCCTCGTCGCTGTGTGGCACCACACTCAGGATACACTTTTATCGCATACAAAGCGACACAAAAAGAACAGAAAAATATAAAACAACACTTTTCCCGACTTTTTTTTCGGAGCGAGCTTTTTGCTTCACTTCAAACACTGCACATTGCTCCGAATTTTCTCCTGCTTCAACTTATTTTTCCCATTTCTCGACAGGCTTGGTTTTCACACCCTCTTTTGTACCTTTTGCGAAGATTGTTTTGTGAGCGTTTGTACCGAAAACGGCGAGCAAACACAGGAGCAAGACCCTCAAACACAACCAGCGGGGGGGGGCGGGGTGTTCTGGCAGCTGGGTG]
consensusID : consensus_4567#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 645 fasta sequence
[ACACACTCACACGCACACAGGTACGCACACAGGTAGTATGAAGGGAACTTGCACACTTGATGAGATTGCTGGGTGTGCTGGATTTTACACAGCTGTAAATCTTGTTACACAGCAAACGCACACACACACCCCTTTACAGACGCACACACGCACACGGCGATGAGCCAAAAAGAAAACACACCACCGTTGACCGAGATTTTCCAGGAAACTGGCCCCCTGTTATCCGACACGCGTACCCGCGCGCACACACAAGGATAAAAACGCACACACAGAGCCCGAGACGCACACACACGCACAGGAACGTACGCACACACACACACACAGCTACACACGCACACAGTTTGCGAATCGCAACATAGATTTTCTGCCACTTTTTTTGGAAACGAGATTCAAAGGGATGGAGGGGGGCACTGTGTTTTTCCTTCTTTCTTTTTTTTTTGCTGTCGCTTTCCACTTACAACAACACTTTTCCCGACTTTTTTTTCCGAGCGAGCTTTTTGCTTCACTTCAAACACTGCACATTGCTCCGAATTTTCTCCTGCTTTTGCGAAGATTGTTTTGTGAGCGTTTGTACCGAAAACGGCGAGCAAACACAGGAGCAAGACCCTCAAACACAACCACACCACACCGTTCTGTTCTGGCCGG]
[-] EMBL BM579555 [ACACACTCACACGCACACAGGTACGCACACAGGTAGTATGAAGGGAACTTGCACACTTGATGAGATTGCTGGGTGTGCTGGATTTTACACAGCTGTAAATCTTGTTACACAGCAAACGCACACACACACCCCTTTACAGACGCACACACGCACACGGCGATGAGCCAAAAAGAAAACACACCACCGTTGACCGAGATTTTCCAGGAAACTGGCCCCCTGTTATCCGACACGCGTACCCGCGCGCACACACAAGGATAAAAACGCACACACAGAGCCCGAGACGCACACACACGCACAGGAACGTACGCACACACACACACACAGCTACACACGCACACAGTTTGCGAATCGCAACATAGATTTTCTGCCACTTTTTTTGGAAACGAGATTCAAAGGGATGGAGGGGGGCACTGTGTTTTTCCTTCTTTCTTTTTTTTTTGCTGTCGCTTTCCACTTACAACAACACTTTTCCCGACTTTTTTTTCCGAGCGAGCTTTTTGCTTCACTTCAAACACTGCACATTGCTCCGAATTTTCTCCTGCTTTTGCGAAGATTGTTTTGTGAGCGTTTGTACCGAAAACGGCGAGCAAACACAGGAGCAAGACCCTCAAACACAACCACACCACACCGTTCTGTTCTGGCCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4567#0 GTAACTGCTGCTGCTGCTGCTGCTTCAAAAACAAACGCTGACTGACAGTGCCGTACACTA 60
consensus_4567#1 ------------------------------------------------------------
consensus_4567#2 ------------------------------------------------------------
consensus_4567#0 ACGGTCATAGTGTTGGTGTGTGTCCCCCCCCCCACCCCGATTCTTTTTACAGCCTCATTT 120
consensus_4567#1 --------------GGTGTGTGTCTGAATTCTCGATGCGATTCTTTTTACAGCCTCATTT 46
consensus_4567#2 ------------------------------------------------------------
consensus_4567#0 CAATTCTCTTGTTCTCTCTTCCTTTCTTCACACCTCCAGCAGAGAAGTTTTGTGTGCAGA 180
consensus_4567#1 CAATTCTCTTGTTCTCTCTTCCTTTCTTCACACCTCCAGCAGAGAAGTTTTGTGTGCAGA 106
consensus_4567#2 ------------------------------------------------------------
consensus_4567#0 TTCGTCGAGAAAACGTTCGTTTTACATCACACAATCCTTCACATTCGCCTCCAAAGTCCT 240
consensus_4567#1 TTCGTCGAGAAAACGTTCGTTTTACATCACACAATCCTTCACATTCGCCTCCAAAGTCCT 166
consensus_4567#2 ----------------------------ACACACTCACACGCACACAGGTACGCA----- 27
***** ** * ** * * * *
consensus_4567#0 TATTCGCCGCAGCGCCGGATTTCGCTGTTTCGCCTTGCCGCCTTCTGTGTCCTTTTTCTC 300
consensus_4567#1 TATTCGCCGCAGCGCCGGATTTCGCTGTTTCGCCTTGCCGCCTTCTGTGTCCTTTTTCTC 226
consensus_4567#2 CACAGGTAGTATGAAGGGAACTTGCACACTTGATGAGA---TTGCTGGGTGTGCTGGATT 84
* * * * *** * ** * * * * *** ** * *
consensus_4567#0 TTGCTGTGACTGCCTTATTATCCTGTCTCGACAGCGTACGGTCGTCGCCTGCCCTGTTTC 360
consensus_4567#1 TTGCTGTGACTGCCTTATTATCCTGTCTCGACAGCGTACGGTCGTCGCCTGCCCTGTTTC 286
consensus_4567#2 TTAC----ACAGCTGTAA-ATCTTGTTAC-ACAGCAAACGCACA-CACACACCCCTTTAC 137
** * ** ** ** *** *** * ***** *** * * * *** ** *
consensus_4567#0 CGAT--ATCCGCGTACAAGCCGATACACGTGTGTTTTTATGTTGCTGCTGCTGCTGCCGC 418
consensus_4567#1 CGAT--ATCCGCGTACAAGCCGATACACGTGTGTGTGTATGTTGCTGCTGCTGCTGCCGC 344
consensus_4567#2 AGACGCACACACGCACACGGCGATGAGCCAAAAAGAAAACAC-ACCACCGTTGACCGAGA 196
** * * ** *** * **** * * * * * ** *
consensus_4567#0 TTCTGCAACGGGATGTTGATGTCTACTTATACTGCTTCTTTGCAGTATGTCCTCACACTA 478
consensus_4567#1 TTCTGCAACGGGATGTTGATGTCTACTTATACTGCTTCTTTGCAGTATGTCCTCACACTA 404
consensus_4567#2 TTTTCCA---GGAAACTGGCCCCCTGTTATCCGACAC-------GCGTACCCGCGCGCAC 246
** * ** *** ** * **** * * * * ** * * *
consensus_4567#0 CTGCTGCGGGAACACCATTTTTGCATACATCGAG-CGGGCACGGCCGAAGAGGAAGAAGA 537
consensus_4567#1 CTGCTGCGG-AACACCATTTTTGCATACATCGAG-CGGGCACGGCCGAAGAGGAAGAAGA 462
consensus_4567#2 ACACAAGGATAAAAACGCACACACAGAGCCCGAGACGCACACACACGCACAGGAAC---- 302
* * ** * * ** * **** ** *** ** * *****
consensus_4567#0 AGATGGTGGTAGGAATAAGGAAAAAGACACCACAGCACAATCGAATATCCTTCTATTCAC 597
consensus_4567#1 AGATGGTGGTAGGAATAAGGAAAAAGACACCACAGCACAATCGAATATCCTTCTATTCAC 522
consensus_4567#2 --------GTACGCACA--CACACACACACAGCTACACACGCACACAGTTTGCGAATCGC 352
*** * * * * * * **** * **** * * * * * * ** *
consensus_4567#0 TGCACTGGCACATTTTTTATTTTTGCTTCTTTCCCACGGGGTGTTCGAAGGGGGGAGGAA 657
consensus_4567#1 TGCACTGGCACATTTTTTATTTTTGCTTCTTTCCCACGGGGTGTTCGAAGGGGGGAGGAA 582
consensus_4567#2 AACA----TAGATTTTCTGCC---ACTTTTTTTGGAAACGAGATTCAAAGGGATGGAGGG 405
** * ***** * *** *** * * *** ***** * *
consensus_4567#0 GAAAAGGAAACCCTCGTCGCTGTGTGGCACCACACTCAGGATACACTTTTATCGCATACA 717
consensus_4567#1 GAAAAGGAAACCCTCGTCGCTGTGTGGCACCACACTCAGGATACACTTTTATCGCATACA 642
consensus_4567#2 GGG--------------CACTGTGTTTTTCCTTCTT-----TCTTTTTTTTTTGC---TG 443
* * ****** ** * * **** * **
consensus_4567#0 AAGCGACACAAAAAGAACAAAAAAATATAAAACAACACTTTTCCCGACTTTTTTTTCGGA 777
consensus_4567#1 AAGCGACACAAAAAGAACAGAAAAATATAAAACAACACTTTTCCCGACTTTTTTTTCGGA 702
consensus_4567#2 TCGCTTTCCA---------------CTTACAACAACACTTTTCCCGACTTTTTTTTCCGA 488
** ** ** *************************** **
consensus_4567#0 GCGAGCTTTTTGCTTCACTTCAAACACTGCACATTGCTCCGAATTTTCTCCTGCTTCAAC 837
consensus_4567#1 GCGAGCTTTTTGCTTCACTTCAAACACTGCACATTGCTCCGAATTTTCTCCTGCTTCAAC 762
consensus_4567#2 GCGAGCTTTTTGCTTCACTTCAAACACTGCACATTGCTCCGAATTTTCTCCTGCTT---- 544
********************************************************
consensus_4567#0 TTATTTTTCCCATTTCTCGACAGGCTTGGTTTTCACACCCTCTTTTTGTACCTTTTGCGA 897
consensus_4567#1 TTATTTTTCCCATTTCTCGACAGGCTTGGTTTTCACACCCTCTTTT-GTACCTTTTGCGA 821
consensus_4567#2 ------------------------------------------------------TTGCGA 550
******
consensus_4567#0 AGATTGTTTTGTGAGCGTTTGTACCGAAAACGGCGAGCAAACACAGGAGCAAGACCCTCA 957
consensus_4567#1 AGATTGTTTTGTGAGCGTTTGTACCGAAAACGGCGAGCAAACACAGGAGCAAGACCCTCA 881
consensus_4567#2 AGATTGTTTTGTGAGCGTTTGTACCGAAAACGGCGAGCAAACACAGGAGCAAGACCCTCA 610
************************************************************
consensus_4567#0 AACACAACCAC---ACCACACCGTTCTGTTC------------- 985
consensus_4567#1 AACACAACCAGCGGGGGGGGGCGGGGTGTTCTGGCAGCTGGGTG 925
consensus_4567#2 AACACAACCAC---ACCACACCGTTCTGTTCTGGCCGG------ 645
********** ** *****
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||