These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4577#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence [CCGACATTGCCAGCCGGCTGCAAGAGCTCGTGCACTTTTTAGTTATTTACTTTTATTGAAATTTCCCAATTAAAAACTTACACCTAGCCAACATGACCACCCTGAGGCCCTTCACCTGCAACGATATGTTCCGGTTCAACAAAGTGTGCGTGCAAAGAGCTTGGCGATGCAGCGCATTCTGGTACAGTGCGTTCGCTAACGACAAGAATGTTCCTTTTCTTCCCCGCCCCACAGGAACCTGGACCCACTGACCGAAACCTACTGTCTTTCGTTCTACATGCAGTACCTGGCACATTGGCCAGAGTACTTCCAGGTGGCCGAATCGCCGACCGGAGAAATCATGGGCTACATTATGGGCAAGGCGGAAGGTCAAGGCGAAAGCTGGCACGGCCACGTAACGGCTCTTACCGTGTCGCCCGACTACCGACGGCTCGGCCTAGCAGCTACGCTGATGAGCTTCCTGGAGGATGTGAGCGAAAAGAAACGGTGCTACTTTGTAGATCTGTTTGTTCGCGTGAGCAATAAAATTGCCATCGAAATGTACACCAAGCTAGGCTACATCGTGTACCGGACGGTGCTCGAGTATTACGTCGGCGATCCGGACGAGGATGCGTACGACATGCGGAAGGCCTGCTCGAGGGATGTTCACAAAAAGTCCGTTATACCGCTGGAGCACCCGGTACGGGCCCGAAGA] [+] EMBL BM578558 [CCGACATTGCCAGCCGGCTGCAAGAGCTCGTGCACTTTTTAGTTATTTACTTTTATTGAAATTTCCCAATTAAAAACTTACACCTAGCCAACATGACCACCCTGAGGCCCTTCACCTGCAACGATATGTTCCGGTTCAACAAAGTGTGCGTGCAAAGAGCTTGGCGATGCAGCGCATTCTGGTACAGTGCGTTCGCTAACGACAAGAATGTTCCTTTTCTTCCCCGCCCCACAGGAACCTGGACCCACTGACCGAAACCTACTGTCTTTCGTTCTACATGCAGTACCTGGCACATTGGCCAGAGTACTTCCAGGTGGCCGAATCGCCGACCGGAGAAATCATGGGCTACATTATGGGCAAGGCGGAAGGTCAAGGCGAAAGCTGGCACGGCCACGTAACGGCTCTTACCGTGTCGCCCGACTACCGACGGCTCGGCCTAGCAGCTACGCTGATGAGCTTCCTGGAGGATGTGAGCGAAAAGAAACGGTGCTACTTTGTAGATCTGTTTGTTCGCGTGAGCAATAAAATTGCCATCGAAATGTACACCAAGCTAGGCTACATCGTGTACCGGACGGTGCTCGAGTATTACGTCGGCGATCCGGACGAGGATGCGTACGACATGCGGAAGGCCTGCTCGAGGGATGTTCACAAAAAGTCCGTTATACCGCTGGAGCACCCGGTACGGGCCCGAAGA] consensusID : consensus_4577#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 644 fasta sequence [CCGGAAAAACATTGCCAGCCGGCTGCAAGAGCTCGTGCACTTTTTAGTTATTTACTTTTATTGAAATTTCCCAATTAAAAAACTTACACCTAGCCAACATGACCACCCTGAGGCCCTTCACCTGCAACGATATGTTCCGGTTCAACAAAGTGAACCTGGACCCACTGACCGAAACCTACTGTCTTTCGTTCTACATGCAGTACCTGGCACATTGGCCAGAGTACTTCCAGGTGGCCGAATCGCCGACCGGAGAAATCATGGGCTACATTATGGGCAAGGCGGAAGGTCAAGGCGAAAGCTGGCACGGCCACGTAACGGCTCTTACCGTGTCGCCCGACTACCGACGGCTCGGCCTAGCAGCTACGCTGATGAGCTTCCTGGAGGATGTGAGCGAAAAGAAACGGTGCTACTTTGTAGATCTGTTTGTTCGCGTGAGCAATAAAATTGCCATCGAAATGTACACCAAGCTAGGCTACATCGTGTACCGGACGGTGCTCGAGTATTACGTCGGCGATCCGGACGAGGATGCGTACGACATGCGGAAGGCCTGCTCGAGGGATGTTCACAAAAAGTCCGTTATACCGCTGGAGCACCCGGTACGGCCCGAAGAGGTGGATTGATAACGACCCAAACGAGGCAGCGAA] [+] EMBL BM600201 [CCGGAAAAACATTGCCAGCCGGCTGCAAGAGCTCGTGCACTTTTTAGTTATTTACTTTTATTGAAATTTCCCAATTAAAAAACTTACACCTAGCCAACATGACCACCCTGAGGCCCTTCACCTGCAACGATATGTTCCGGTTCAACAAAGTGAACCTGGACCCACTGACCGAAACCTACTGTCTTTCGTTCTACATGCAGTACCTGGCACATTGGCCAGAGTACTTCCAGGTGGCCGAATCGCCGACCGGAGAAATCATGGGCTACATTATGGGCAAGGCGGAAGGTCAAGGCGAAAGCTGGCACGGCCACGTAACGGCTCTTACCGTGTCGCCCGACTACCGACGGCTCGGCCTAGCAGCTACGCTGATGAGCTTCCTGGAGGATGTGAGCGAAAAGAAACGGTGCTACTTTGTAGATCTGTTTGTTCGCGTGAGCAATAAAATTGCCATCGAAATGTACACCAAGCTAGGCTACATCGTGTACCGGACGGTGCTCGAGTATTACGTCGGCGATCCGGACGAGGATGCGTACGACATGCGGAAGGCCTGCT ] [+] EMBL BM577143 [ ccgCTTTTATTGAAATTTCCCAATT AAAAACTTACACCTAGCCAACATGACCACCCTGAGGCCCTTCACCTGCAACGATATGTTCCGGTTCAACAAAGTGAACCTGGACCCACTGACCGAAACCTACTGTCTTTCGTTCTACATGCAGTACCTGGCACATTGGCCAGAGTACTTCCAGGTGGCCGAATCGCCGACCGGAGAAATCATGGGCTACATTATGGGCAAGGCGGAAGGTCAAGGCGAAAGCTGGCACGGCCACGTAACGGCTCTTACCGTGTCGCCCGACTACCGACGGCTCGGCCTAGCAGCTACGCTGATGAGCTTCCTGGAGGATGTGAGCGAAAAGAAACGGTGCTACTTTGTAGATCTGTTTGTTCGCGTGAGCAATAAAATTGCCATCGAAATGTACACCAAGCTAGGCTACATCGTGTACCGGACGGTGCTCGAGTATTACGTCGGCGATCCGGACGAGGATGCGTACGACATGCGGAAGGCCTGCTCGAGGGATGTTCACAAAAAGTCCGTTATACCGCTGGAGCACCCGGTACGGCCCGAAGAGGTGGATTGATAACGACCCAAACGAGGCAGCGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4577#0 -----CCGACATTGCCAGCCGGCTGCAAGAGCTCGTGCACTTTTTAGTTATTTACTTTTA 55 consensus_4577#1 CCGGAAAAACATTGCCAGCCGGCTGCAAGAGCTCGTGCACTTTTTAGTTATTTACTTTTA 60 **************************************************** consensus_4577#0 TTGAAATTTCCCAATTAAAAA-CTTACACCTAGCCAACATGACCACCCTGAGGCCCTTCA 114 consensus_4577#1 TTGAAATTTCCCAATTAAAAAACTTACACCTAGCCAACATGACCACCCTGAGGCCCTTCA 120 ********************* ************************************** consensus_4577#0 CCTGCAACGATATGTTCCGGTTCAACAAAGTGTGCGTGCAAAGAGCTTGGCGATGCAGCG 174 consensus_4577#1 CCTGCAACGATATGTTCCGGTTCAACAAAGTG---------------------------- 152 ******************************** consensus_4577#0 CATTCTGGTACAGTGCGTTCGCTAACGACAAGAATGTTCCTTTTCTTCCCCGCCCCACAG 234 consensus_4577#1 ------------------------------------------------------------ consensus_4577#0 GAACCTGGACCCACTGACCGAAACCTACTGTCTTTCGTTCTACATGCAGTACCTGGCACA 294 consensus_4577#1 -AACCTGGACCCACTGACCGAAACCTACTGTCTTTCGTTCTACATGCAGTACCTGGCACA 211 *********************************************************** consensus_4577#0 TTGGCCAGAGTACTTCCAGGTGGCCGAATCGCCGACCGGAGAAATCATGGGCTACATTAT 354 consensus_4577#1 TTGGCCAGAGTACTTCCAGGTGGCCGAATCGCCGACCGGAGAAATCATGGGCTACATTAT 271 ************************************************************ consensus_4577#0 GGGCAAGGCGGAAGGTCAAGGCGAAAGCTGGCACGGCCACGTAACGGCTCTTACCGTGTC 414 consensus_4577#1 GGGCAAGGCGGAAGGTCAAGGCGAAAGCTGGCACGGCCACGTAACGGCTCTTACCGTGTC 331 ************************************************************ consensus_4577#0 GCCCGACTACCGACGGCTCGGCCTAGCAGCTACGCTGATGAGCTTCCTGGAGGATGTGAG 474 consensus_4577#1 GCCCGACTACCGACGGCTCGGCCTAGCAGCTACGCTGATGAGCTTCCTGGAGGATGTGAG 391 ************************************************************ consensus_4577#0 CGAAAAGAAACGGTGCTACTTTGTAGATCTGTTTGTTCGCGTGAGCAATAAAATTGCCAT 534 consensus_4577#1 CGAAAAGAAACGGTGCTACTTTGTAGATCTGTTTGTTCGCGTGAGCAATAAAATTGCCAT 451 ************************************************************ consensus_4577#0 CGAAATGTACACCAAGCTAGGCTACATCGTGTACCGGACGGTGCTCGAGTATTACGTCGG 594 consensus_4577#1 CGAAATGTACACCAAGCTAGGCTACATCGTGTACCGGACGGTGCTCGAGTATTACGTCGG 511 ************************************************************ consensus_4577#0 CGATCCGGACGAGGATGCGTACGACATGCGGAAGGCCTGCTCGAGGGATGTTCACAAAAA 654 consensus_4577#1 CGATCCGGACGAGGATGCGTACGACATGCGGAAGGCCTGCTCGAGGGATGTTCACAAAAA 571 ************************************************************ consensus_4577#0 GTCCGTTATACCGCTGGAGCACCCGGTACGGGCCCGAAGA-------------------- 694 consensus_4577#1 GTCCGTTATACCGCTGGAGCACCCGGTACGG-CCCGAAGAGGTGGATTGATAACGACCCA 630 ******************************* ******** consensus_4577#0 -------------- consensus_4577#1 AACGAGGCAGCGAA 644 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||