These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4578#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 517 fasta sequence [CATCAGCTGCTGCTGATCTCGCAAAAATCTACCCAGCCACTGTTCCCGGGCTACTCGATACGGATGCTGCAGGTGCCTGGGTTTGTGGCGAGTGCCGGTGCCGCCTCGATGCTCGTGTCGTCCCGCTCCGTCCGTGACATTGCCATCGATGCGTCGGACGATCTGTTC-GC-GTGTGCTGCGATGGAAAAGATGGTGAAGGTATTTTCCATCCAG-AAT-CGCTCGGTCCA-GTGTACGATCACGCCGAGCCAGGATCCGCTGTGGTCGTGTGCGTTCGATAAGGAGCGTTCCAAGTTCCTGTACCTCGGTTCGCAGCGCGGTTCCGTGTACGTGTACGACATCCGGCAGCCGGACCAGCTGCTGGAAGAGTTCCGGGTCGGGCACGGGCAGAACGATTACACCGGCGTGGTAAAGATTTGTCCGGTCGAGCCGACGTCCATCATTCCGTGCGGTGGGTTTTTTGGTGTGCAAGCTGAAATCGATCTGGTTCTACGAGTACACCCCAACCCAGCAGATCGAA] [+] EMBL BX614536 [CATCAGCTGCTGCTGATCTCGCAAAAATCTACCCAGCCACTGTTCCCGGGCTACTCGATACGGATGCTGCAGGTGCCTGGGTTTGTGGCGAGTGCCGGTGCCGCCTCGATGCTCGTGTCGTCCCGCTCCGTCCGTGACATTGCCATCGATGCGTCGGACGATCTGTTC GC GTGTGCTGCGATGGAAAAGATGGTGAAGGTATTTTCCATCCAG AAT CGCTCGGTCCA GTGTACGATCACGCCGAGCCAGGATCCGCTGTGGTCGTGTGCGTTCGATAAGGAGCGTTCCAAGTTCCTGTACCTCGGTTCGCAGCGCGGTTCCGTGTACGTGTACGACATCCGGCAGCCGGACCAGCTGCTGGAAGAGTTCCGGGTCGGGCACGGGCAGAACGATTACACCGGCGTGGTAAAGATTTGTCCGGTCGAGCCGACGTCCATCATTCCGTGCGGTGGGTTTTTTGGTGTGCAAGCTGAAATCGATCTGGTTCTACGAGTACACCCCAACCCAGCAGATCGAA] [+] EMBL AL931144 [ GGACGATCTGTTCGGCGGTGTGCTGCGATGGAAAAGATGGTGAAGGTATTTTCCATCCAGAAATCCGCTCGGTCCAGGTGTACGATCACGCCGAGCCAGGATCCGCTGTGGTCGTGTGCGTTCGATAAGGAGCGTTCCAAGTTCCTGTACCTCGGTTCGCAGCGCGGTTCCGTGTACGTGTACGACATCCGGCAGCCGGA ] consensusID : consensus_4578#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 258 fasta sequence [CTGCGGGAAGAGTCCCGGGTCGGGCACGGGCAGAACGATAACACCGGCGGGGTAAAGATAGGTCCGGGCGAGCCGACGTCCATCATGCCGTGCGGTGGGTGAGGGGTGTGCAAGCTGAAATCGATCTGGTACTACGAGTACACCCCAACCCAGCAGAACGAAAGCCATCTGCTCAACATAACCGGGGCGTGCTCCGCGATGAGCTACAATCCGGACAGTGGGCTGATTCTGGTCAGCGTGCGACCGACGACCGACAAA] [+] EMBL BX612566 [CTGCGGGAAGAGTCCCGGGTCGGGCACGGGCAGAACGATAACACCGGCGGGGTAAAGATAGGTCCGGGCGAGCCGACGTCCATCATGCCGTGCGGTGGGTGAGGGGTGTGCAAGCTGAAATCGATCTGGTACTACGAGTACACCCCAACCCAGCAGAACGAAAGCCATCTGCTCAACATAACCGGGGCGTGCTCCGCGATGAGCTACAATCCGGACAGTGGGCTGATTCTGGTCAGCGTGCGACCGACGACCGACAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4578#0 CATCAGCTGCTGCTGATCTCGCAAAAATCTACCCAGCCACTGTTCCCGGGCTACTCGATA 60 consensus_4578#1 ------------------------------------------------------------ consensus_4578#0 CGGATGCTGCAGGTGCCTGGGTTTGTGGCGAGTGCCGGTGCCGCCTCGATGCTCGTGTCG 120 consensus_4578#1 ------------------------------------------------------------ consensus_4578#0 TCCCGCTCCGTCCGTGACATTGCCATCGATGCGTCGGACGATCTGTTCGCGTGTGCTGCG 180 consensus_4578#1 ------------------------------------------------------------ consensus_4578#0 ATGGAAAAGATGGTGAAGGTATTTTCCATCCAGAATCGCTCGGTCCAGTGTACGATCACG 240 consensus_4578#1 ------------------------------------------------------------ consensus_4578#0 CCGAGCCAGGATCCGCTGTGGTCGTGTGCGTTCGATAAGGAGCGTTCCAAGTTCCTGTAC 300 consensus_4578#1 ------------------------------------------------------------ consensus_4578#0 CTCGGTTCGCAGCGCGGTTCCGTGTACGTGTACGACATCCGGCAGCCGGACCAGCTGCTG 360 consensus_4578#1 ------------------------------------------------------CTGCGG 6 **** * consensus_4578#0 GAAGAGTTCCGGGTCGGGCACGGGCAGAACGATTACACCGGCGTGGTAAAGATTTGTCCG 420 consensus_4578#1 GAAGAGTCCCGGGTCGGGCACGGGCAGAACGATAACACCGGCGGGGTAAAGATAGGTCCG 66 ******* ************************* ********* ********* ***** consensus_4578#0 GTCGAGCCGACGTCCATCATTCCGTGCGGTGGGTTTTTTGGTGTGCAAGCTGAAATCGAT 480 consensus_4578#1 GGCGAGCCGACGTCCATCATGCCGTGCGGTGGGTGAGG-GGTGTGCAAGCTGAAATCGAT 125 * ****************** ************* ********************* consensus_4578#0 CTGGTTCTACGAGTACACCCCAACCCAGCAGATCGAA----------------------- 517 consensus_4578#1 CTGGTACTACGAGTACACCCCAACCCAGCAGAACGAAAGCCATCTGCTCAACATAACCGG 185 ***** ************************** **** consensus_4578#0 ------------------------------------------------------------ consensus_4578#1 GGCGTGCTCCGCGATGAGCTACAATCCGGACAGTGGGCTGATTCTGGTCAGCGTGCGACC 245 consensus_4578#0 ------------- consensus_4578#1 GACGACCGACAAA 258 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||