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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4587#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 822 fasta sequence
[TCCCCAGGTATCTGTGAGTGCGTCTGCATTTCAAAATAACTATCGTGGGNGGCCAAATAGTGTGGAAAAAGTTTGAGGAAATAATTGCGATATTCAATTGCATATAACAATCATTCTGTGATGAGAGGAGTTTGGAAACTGCTGTTTGGGCGATATCTTCTAGTTACTAATACTATTAGTTCCGGTGTACTGATGATGCGGGAGATGTTGCAGCTCAAGAAATTGAACGACGACAGGAGAAAACTACATCGGCTTCAGAAGGCCTCGAAAGGCAGCGAGCCTTAAATATGACATTGGTAGGACTTTCCCAAGGCCCGCTGCATCATTATCTTTACAAATGGATGGACGCTTATCTTCCCGGCGCTACCGGTACGAACAGTGCTCAAAAAGATTGCTATCGATCAGCCTTGTTATATCACCCATCTTCATCGTTACATATTTATACAGCGCTGGTCTTCTAGAAGGTGCTTCTGTAAGGGACTGTAACGCCGAACTGCGCTACAAGTACTGGACTATCTATACAGCGGATTGGCTTGTTTGNGCCTCCGACACAGTTATAAACTTACTACTTACTTAGCCCAAAATATCGGTGTCCTTCTATATTAAGTGCCATTACCATGGCGTGTACCAATGTGTTTCTCTGNTACCATCAACATAACGATGATNNCCATTTCTGAGNATAACCCAGAAAATGAAATCGCTCAAGGCGGNATGNTNTGGACCGGAACAGGCAACACCGACAGGTTNACACCATNACTGGGNAATTCTCCTCTGATTATCCCCATATNTGGNTNATTGACCGGCGCGCANNTGAGCAGTATC]
[+] EMBL AL932877 [TCCCCAGGTATCTGTGAGTGCGTCTGCATTTCAAAATAACTATCGTGGGNGGCCAAATAGTGTGGAAAAAGTTTGAGGAAATAATTGCGATATTCAATTGCATATAACAATCATTCTGTGATGAGAGGAGTTTGGAAACTGCTGTTTGGGCGATATCTTCTAGTTACTAATACTATTAGTTCCGGTGTACTGATGATGCGGGAGATGTTGCAGCTCAAGAAATTGAACGACGACAGGAGAAAACTACATCGGCTTCAGAAGGCCTCGAAAGGCAGCGAGCCTTAAATATGACATTGGTAGGACTTTCCCAAGGCCCGCTGCATCATTATCTTTACAAATGGATGGACGCTTATCTTCCCGGCGCTACCGGTACGAACAGTGCTCAAAAAGATTGCTATCGATCAGCCTTGTTATATCACCCATCTTCATCGTTACATATTTATACAGCGCTGGTCTTCTAGAAGGTGCTTCTGTAAGGGACTGTAACGCCGAACTGCGCTACAAGTACTGGACTATCTATACAGCGGATTGGCTTGTTTGNGCCTCCGACACAGTTATAAACTTACTACTTACTTAGCCCAAAATATCGGTGTCCTTCTATATTAAGTGCCATTACCATGGCGTGTACCAATGTGTTTCTCTGNTACCATCAACATAACGATGATNNCCATTTCTGAGNATAACCCAGAAAATGAAATCGCTCAAGGCGGNATGNTNTGGACCGGAACAGGCAACACCGACAGGTTNACACCATNACTGGGNAATTCTCCTCTGATTATCCCCATATNTGGNTNATTGACCGGCGCGCANNTGAGCAGTATC]
consensusID : consensus_4587#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 700 fasta sequence
[TAATATGCGGCAATGCTGGCTAGTTATTTTCATCACCCAATGTTATTACCATTTCAATTGTAAACATCATAATGTCATTCAAATTTAGACGTTTTCTGTCATGTTGTGCAACAGTGTTGCCAGAACAATTAGTCTGATATTTTTGAAAAATTCTTTCGTACGCTTTACATGACTTGTAATTCTTCATGCACATTTTAGCTGTTGAAATATAAATACAAATACAAATATAGCTGTATGATGGAATACAAAAATGATTGTACTTATACACTTTAATTCATTGCATAGGTTCGGTTATGCGATACAAAAATTCGACATCATTTTGGCTTATCGCGTAATGAATGCGGTTGGCTGCTGATCAGCTGGTGATTACGCAAGTTTTTTTTTTGTAGACAAACGTAAACAAACTTTGCTCGTTCCATTCATGTAATGCTTATCTTTCCGATTTGTTGAGTGCGTCTGCATTTCAAAAATAACTATCGTGGGGGCCAAATAGTGTGGAAAAAGTTTGAGGAAATAATTGCGATATTCAATTGCATATAACAATCATTCTGTGATGAGAGGAGTTTGGAAACTGCTGTTTGGGCGATATCTTCTAGTTACTGTCGTAACCGCAGCCCTTGTCATCATTGATGTTATACATTTTAACACTTTTTTTTTTTACTGCTGGGACACTCTTTTTATTGCGACTTGTCTTTTCCGG]
[-] EMBL BM619351 [TAATATGCGGCAATGCTGGCTAGTTATTTTCATCACCCAATGTTATTACCATTTCAATTGTAAACATCATAATGTCATTCAAATTTAGACGTTTTCTGTCATGTTGTGCAACAGTGTTGCCAGAACAATTAGTCTGATATTTTTGAAAAATTCTTTCGTACGCTTTACATGACTTGTAATTCTTCATGCACATTTTAGCTGTTGAAATATAAATACAAATACAAATATAGCTGTATGATGGAATACAAAAATGATTGTACTTATACACTTTAATTCATTGCATAGGTTCGGTTATGCGATACAAAAATTCGACATCATTTTGGCTTATCGCGTAATGAATGCGGTTGGCTGCTGATCAGCTGGTGATTACGCAAGTTTTTTTTTTGTAGACAAACGTAAACAAACTTTGCTCGTTCCATTCATGTAATGCTTATCTTTCCGATTTGTTGAGTGCGTCTGCATTTCAAAAATAACTATCGTGGGGGCCAAATAGTGTGGAAAAAGTTTGAGGAAATAATTGCGATATTCAATTGCATATAACAATCATTCTGTGATGAGAGGAGTTTGGAAACTGCTGTTTGGGCGATATCTTCTAGTTACTGTCGTAACCGCAGCCCTTGTCATCATTGATGTTATACATTTTAACACTTTTTTTTTTTACTGCTGGGACACTCTTTTTATTGCGACTTGTCTTTTCCGG]
consensusID : consensus_4587#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 558 fasta sequence
[TTATCTGCATTTCAAAAATAACTATCGTGGGGGCCAATAGTGTGGTAAAAGTTTGAGGAAATAATTGCGATATTCAATTGCATATAACAATCATTCTGTGATGAGAGGAGTTTGGAAACTGCTGTTTGGGCGATATCTTCTAGTTACTAATACTATTAGTTCCGGTGTACTGATGCTGGCGGGAGATGTTGCAGCTCAAGAAATTGAACGACGACAGGAGAAAACTACATCGGCTTCAGAAGGCCTCGAAAGGCAGCGAGCCTTTTATTTTTTATGTTTCATGGCACAGTAAATATGACATTGGTAGGACTTTCCCAAGGCCCGCTGCATCATTATCTTTACAAATGGATGGACGCTTATCTTCCCGGCGCTACCGTACGAACAGTGCTCAAAAAGATTGCTATCGATCAGCTTGTTATATCACCCATCTTCATCGTTACATATTTATACAGCGCTGGTCTTCTAGAAGGTGCTTCTGTAAGGGACTGTAACGCCGAACTGCGCTACAAGTACTGGACTATCTATACAGCGGATTGGCTTGTTTGGCCTCCGACACAG]
[+] EMBL AL933385 [TTATCTGCATTTCAAAAATAACTATCGTGGGGGCCAATAGTGTGGTAAAAGTTTGAGGAAATAATTGCGATATTCAATTGCATATAACAATCATTCTGTGATGAGAGGAGTTTGGAAACTGCTGTTTGGGCGATATCTTCTAGTTACTAATACTATTAGTTCCGGTGTACTGATGCTGGCGGGAGATGTTGCAGCTCAAGAAATTGAACGACGACAGGAGAAAACTACATCGGCTTCAGAAGGCCTCGAAAGGCAGCGAGCCTTTTATTTTTTATGTTTCATGGCACAGTAAATATGACATTGGTAGGACTTTCCCAAGGCCCGCTGCATCATTATCTTTACAAATGGATGGACGCTTATCTTCCCGGCGCTACCGTACGAACAGTGCTCAAAAAGATTGCTATCGATCAGCTTGTTATATCACCCATCTTCATCGTTACATATTTATACAGCGCTGGTCTTCTAGAAGGTGCTTCTGTAAGGGACTGTAACGCCGAACTGCGCTACAAGTACTGGACTATCTATACAGCGGATTGGCTTGTTTGGCCTCCGACACAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4587#0 TCCCCAGGTATCTGTGAGTGCGTCTGCATTTCAAAA-TAACTATCGTGGGNGGCCAAATA 59
consensus_4587#2 -------------------TTATCTGCATTTCAAAAATAACTATCGTGGGGG--CCAATA 39
consensus_4587#1 ---------------TAATATG-CGGCAATGCTGGC-TAGTTATTTTCATCA-CCCAATG 42
* *** * * ** *** * * ***
consensus_4587#0 GTGTGGAAAAAGT--TTGAGGAAATAATTGCGATATTCAATTGCATATAACAATCATTCT 117
consensus_4587#2 GTGTGGTAAAAGT--TTGAGGAAATAATTGCGATATTCAATTGCATATAACAATCATTCT 97
consensus_4587#1 TTATTACCATTTCAATTGTAAACATCATAATGTCATTCAAATTTAGACGTTTTCTGTCAT 102
* * * *** * ** ** * ****** * * * * *
consensus_4587#0 GTGATGAGAGGAGTTTGGAAACTGCTGTTTGGGCGATATCTTCTAGTTACTAATACTATT 177
consensus_4587#2 GTGATGAGAGGAGTTTGGAAACTGCTGTTTGGGCGATATCTTCTAGTTACTAATACTATT 157
consensus_4587#1 GTTGTGCAAC-AGTGTTGCCAGAACAATTAGTCTGATATTTTTGAAAAATTCTTTCGTAC 161
** ** * *** * * * * ** * ***** ** * * * * *
consensus_4587#0 AGTTCCGGTGTACTGATGATG-CGGGAGATGTTGCAGCTCAAGAAATTGAACGACGACAG 236
consensus_4587#2 AGTTCCGGTGTACTGATGCTGGCGGGAGATGTTGCAGCTCAAGAAATTGAACGACGACAG 217
consensus_4587#1 GCTTTACATGACTTGTAATTCTTCATGCACATTTTAGCTGTTGAAATATAAATACAA--- 218
** ** ** * * ** **** ***** ** ** *
consensus_4587#0 GAGAAAACTACATCGGCTTCAGAAGGCCTCGAAAGGCAGCGAGCCTT------------- 283
consensus_4587#2 GAGAAAACTACATCGGCTTCAGAAGGCCTCGAAAGGCAGCGAGCCTTTTATTTTTTATGT 277
consensus_4587#1 -ATACAAATATAGCTGTATGATGGAATA-CAAAAATGATTGTACTTATACACTTTAATTC 276
* * ** ** * * * * * * *** * * * *
consensus_4587#0 -------------AAATATG----ACATTGGTAGGACTTTCCCAAGGCCCGCTGCATCAT 326
consensus_4587#2 TTCATGGCACAGTAAATATG----ACATTGGTAGGACTTTCCCAAGGCCCGCTGCATCAT 333
consensus_4587#1 ATTGCATAGGTTCGGTTATGCGATACAAAAATTCGACATCATTTTGGCTTATCGCGTAAT 336
**** *** * *** * *** ** * **
consensus_4587#0 TATC----TTTACAAATGGATGGACGCTTATCTTCCCGGCGCTACCGGTACGAACAGTGC 382
consensus_4587#2 TATC----TTTACAAATGGATGGACGCTTATCTTCCCGGCGCTACCG-TACGAACAGTGC 388
consensus_4587#1 GAATGCGGTTGGCTGCTGATCAGCTGGTGATTACGCAAGTTTTTTTTTTGTAGACAA-AC 395
* ** * ** * * * ** * * * * *** *
consensus_4587#0 TCAAAAAGATTGCTATCGATCAGCCTTGTTATATCACCCATCTTCATCGTTACATATTTA 442
consensus_4587#2 TCAAAAAGATTGCTATCGATCAGC-TTGTTATATCACCCATCTTCATCGTTACATATTTA 447
consensus_4587#1 GTAAACAAACTTTGCTCGTTC--CATTCATGTAATGCTTATCTT-----TCCGATTTGTT 448
*** * * * *** ** * ** * ** * ***** * ** * *
consensus_4587#0 TACAGCGCTGGTCTTCTAGAAGGTGCTTCTGTAAGGGACTGTAACGCCGAACTGCGCTAC 502
consensus_4587#2 TACAGCGCTGGTCTTCTAGAAGGTGCTTCTGTAAGGGACTGTAACGCCGAACTGCGCTAC 507
consensus_4587#1 GAGTGCGTCTGCATTTCAAAAATAACTATCGTGGGGGCCAAATAGTGTGGAAAAAGTTTG 508
* *** * ** * ** ** ** *** * * * * * *
consensus_4587#0 AAGTACTGGACTATCTATACAGCGGATTGGCTTGTTTGNGCCTCCGACACAGTTATAAAC 562
consensus_4587#2 AAGTACTGGACTATCTATACAGCGGATTGGCTTGTTTGG-CCTCCGACACAG-------- 558
consensus_4587#1 AGGAAATAATTGCGATATTCAATTGCATATAACAATCAT-TCTGTGATGAGAGGAGTTTG 567
* * * * *** ** * * * ** **
consensus_4587#0 TTACTACTTACTTAGCCCAAAATATCGGTGTCCTTCTATATTAAGTGCCATTACCATGGC 622
consensus_4587#2 ------------------------------------------------------------
consensus_4587#1 GAAACTGCTGTTTGGGCGATATCTTCTAGTTACTGTCGTAACCGCAGCCCTTGTCATCAT 627
consensus_4587#0 GTGTACCAATGTGTTTCTCTGNTACCATCAACATAACGATGATNNCCATTTCTGAGNATA 682
consensus_4587#2 ------------------------------------------------------------
consensus_4587#1 TGATGTTATACATTTTAACACTTTTTTTTTTTACTGCTGGGACACTCTTTTTATTGCGAC 687
consensus_4587#0 ACCCAGAAAATGAAATCGCTCAAGGCGGNATGNTNTGGACCGGAACAGGCAACACCGACA 742
consensus_4587#2 ------------------------------------------------------------
consensus_4587#1 TTGTCTTTTCCGG----------------------------------------------- 700
consensus_4587#0 GGTTNACACCATNACTGGGNAATTCTCCTCTGATTATCCCCATATNTGGNTNATTGACCG 802
consensus_4587#2 ------------------------------------------------------------
consensus_4587#1 ------------------------------------------------------------
consensus_4587#0 GCGCGCANNTGAGCAGTATC 822
consensus_4587#2 --------------------
consensus_4587#1 --------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||