These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4588#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 699 fasta sequence [CCGCCCACGCGTCCGAGAGAGGAAGGGTACCGGCATTATCCTGCGGAATTAGGACGAGGCCAATCGGACAGCAGGATGGGCGGATTGCAGGCGGCCTGGTCCATCATGTCGATGGTGACGCTGACACCGTTCTTCGCCTTCCTATTTTCCATCGTGTTTATGGCATCGATCGGAAAATCGTTCGGCGTGCGGCGGCTCTACGTGAACCTGCTGGTGAAAATATTCGAGTTCGGTCGTCAGAACATTGAATCGGTGCGGAAGCAGCAGTTTGCCAACATTACACAATCAGATCCAGAAGATGAAGACGCACCCACCGGTGACAATCCTAGCCCGGACGCGGCCGACACCGGCGATGGCACTGGAAGCGCCAAAACGAACGGCACCCTACCGAACGGGGGCAGCCACCGGTACA--TGAACGGGCGCGACACCTCCTCACACATTGCGAACGGTGGCAACACCGT-CATTAGCCGGGCCGAATCGCTCATCCTATCGCCGGAGATGATCGATGACACGCGCAGCAAAAGTGCCGAACCGCACGAGGAGGGCGCGGGTGGTGGTACGCGCGATCAGGGCGAAGAGGGCGACGAGGAAACCAAATCGGATGGGTCGGAGGGCGGCGGCGGCGACCACGAGGCAGCCGGCTTCAAGTTGTCGAACTGTCTCGACTACGTCAAGTCGGGCATGGAGGCCATCATCGAG] [+] EMBL BM595598 [CCGCCCACGCGTCCGAGAGAGGAAGGGTACCGGCATTATCCTGCGGAATTAGGACGAGGCCAATCGGACAGCAGGATGGGCGGATTGCAGGCGGCCTGGTCCATCATGTCGATGGTGACGCTGACACCGTTCTTCGCCTTCCTATTTTCCATCGTGTTTATGGCATCGATCGGAAAATCGTTCGGCGTGCGGCGGCTCTACGTGAACCTGCTGGTGAAAATATTCGAGTTCGGTCGTCAGAACATTGAATCGGTGCGGAAGCAGCAGTTTGCCAACATTACACAATCAGATCCAGAAGATGAAGACGCACCCACCGGTGACAATCCTAGCCCGGACGCGGCCGACACCGGCGATGGCACTGGAAGCGCCAAAACGAACGGCACCCTACCGAACGGGGGCAGCCACCGGTACA TGAACGGGCGCGACACCTCCTCACACATTGCGAACGGTGGCAACACCGT CATTAGCCGGGCCGAATCGCTCATCCTATCGCCGGAGATGATCGATGACACGCGCAGCAAAAGTGCCGAACCGCACGAGGAGGGCGCGGGTGGTGGTACGCGCGATCAGGGCGAAGAGGGCGACGAGGAA ] [+] EMBL CNS08NSZ [ AGATCCAGAAGATGAGGACGCACCCAGCGGTGACAATCCTAGCCCGGACGCGGCCGACACCGGCGATGGCACGGGCAGCGCCAAAACGAACGGCACCCTACCGAACGGGGGCAGCCACCGGTACACCCCCCCGCGCGCGACACTTCCTCACACATTGCGAACGGTGGCAACA CGTACATTAGCCGGGCGGAATCGCTCATCCTATCGCCGGAGATGATCGATGACACGCGCA CAAAAGTGCTGAATCGCAGGAGGAGGGCGCGGGTGGTGGTACGCGCGATCAGGGCGAAGAGGGCGACGAGGAAACCAAATCGGATGGGTCGGAGGGCGGCGGCGGCGACCACGAGGCAGCCGGCTTCAAGTTGTCGAACTGTCTCGACTACGTCAAGTCGGGCATGGAGGCCATCATCGAG] consensusID : consensus_4588#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 645 fasta sequence [CCGATCGCGCCATCGGCATGAATAAAAAAACACGGCTTAAAGCATAACTGTTCGGCTGCGGCTCTCCAGACGTGATAAATAGCACGACGGCCAAGGAACAGAAGGGCACAGTGAACCGTGGTGCGTGAACGTAAACATAATACCGTCGGAGGAAGTGTGCGCTGTGCGTTTTGGTGTGAGCGGCTTCGGTGTGTGCATGTGCTCTGCCGCCTAAAGGAAAGGAAGCTGTGTGCACAAAAGGACAACACATACGCACACACCCGGGAGGGGTAAAGGTTGAGTCGTGCTCGTTTTTGGGGTGACGAATTTGGTGCCCCGTGATTGTTACGTGGTGGTGTTGTTCAGTGCTGGTGCGCGTGTGTGTTAGCCCCCGCAACAACAACAAAAAATCACCGTTTATGTGGGAAGAGTGAGTGTAGTGTAGCAACCCTTCCCAATTACGACGACACCGAAGGACGGAGAGCGAGAGAGAGCGAGAAAGAGCGGAAGGGTACCGGCATTATCCTGCGGAATTAGGACGAGGTCAATCGGACAGCAGGATGGGCGGATTGCAGGCGGCCTGGTCCATCATGTCGATGGTGACGCTGACACCGTTCTTCGCCTTCCTATTTTCCATCGTGTTTATGGCATCGATCGGAAAATCGT] [+] EMBL BM656872 [CCGATCGCGCCATCGGCATGAATAAAAAAACACGGCTTAAAGCATAACTGTTCGGCTGCGGCTCTCCAGACGTGATAAATAGCACGACGGCCAAGGAACAGAAGGGCACAGTGAACCGTGGTGCGTGAACGTAAACATAATACCGTCGGAGGAAGTGTGCGCTGTGCGTTTTGGTGTGAGCGGCTTCGGTGTGTGCATGTGCTCTGCCGCCTAAAGGAAAGGAAGCTGTGTGCACAAAAGGACAACACATACGCACACACCCGGGAGGGGTAAAGGTTGAGTCGTGCTCGTTTTTGGGGTGACGAATTTGGTGCCCCGTGATTGTTACGTGGTGGTGTTGTTCAGTGCTGGTGCGCGTGTGTGTTAGCCCCCGCAACAACAACAAAAAATCACCGTTTATGTGGGAAGAGTGAGTGTAGTGTAGCAACCCTTCCCAATTACGACGACACCGAAGGACGGAGAGCGAGAGAGAGCGAGAAAGAGCGGAAGGGTACCGGCATTATCCTGCGGAATTAGGACGAGGTCAATCGGACAGCAGGATGGGCGGATTGCAGGCGGCCTGGTCCATCATGTCGATGGTGACGCTGACACCGTTCTTCGCCTTCCTATTTTCCATCGTGTTTATGGCATCGATCGGAAAATCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4588#0 CCGCCCACGCGTCCGAGAGAGGAAGGGTACCGGCATTATCCTGCGGAATTAGGACGAGGC 60 consensus_4588#1 -----------------------CCGATCGCGCCATCGGCATGAATAAA-AAAACACGGC 36 * * ** *** * ** ** * ** *** consensus_4588#0 CAATCGGACAGCAGGATGGGCGGATTGCAGGCGGCCTGGTCCAT--CATGTCGATGGTGA 118 consensus_4588#1 TTAAAGCATAACTGTTCGGCTGCGGCTCTCCAGACGTGATAAATAGCACGACGGCCAAGG 96 * * * * * * ** * * * * ** * ** ** * ** * consensus_4588#0 CGCTGACACCGTTCTTCGCCTTCCTATTTTCCATCGTGTTTATGGCATCGATCGGAAAAT 178 consensus_4588#1 AACAGA-AGGGCACAGTGAACCGTGGTGCGTGAACGTAAACATAATACCGTCGGAGGAAG 155 * ** * * * * * * *** ** * ** * ** consensus_4588#0 CGTTCGGCGTGCGGCGGCTCTACGTGAACCTGCTGGTGAAAATATTCGAGTTCGGTCGTC 238 consensus_4588#1 TGTGCGCTGTGCGT---TTTGGTGTGAGCG-GCTTCGGTGTGTGCATGTGCTCTGCCGCC 211 ** ** ***** * **** * *** * * * * ** * ** * consensus_4588#0 AGAACATTGAATCGGTGCGGAAGCAGCAGTTTGCCAACATTACACAATCAGATCCAGAAG 298 consensus_4588#1 TAAAGGAAAGGAAGCTGTGTGCACAAAAG---GACAACAC-ATACGCACACACCCGGGAG 267 ** * ** * ** ** * ***** * ** ** * ** * ** consensus_4588#0 ATGAAGACGCACCCACCGGTGACAATCCTAGCCCGGACGCGGCCGACACCGGCGATGGCA 358 consensus_4588#1 GGGTAAAGG--TTGAGTCGTGCTCGTTTTTGGGGTGACGAATTTGGTGCC--CCGTGATT 323 * * * * * *** * * * **** * ** * ** consensus_4588#0 CTGGAAGCGCCAAAACGAACGGCACCCTACCGAACGGGGGC-AGCCACCGGTACATGAAC 417 consensus_4588#1 GTTACGTGGTGGTGTTGTTCAGTGCTGGTGCGCGTGTGTGTTAGCCCCCGCAACAACAAC 383 * * * * * * ** * * * **** *** *** *** consensus_4588#0 GGGCGCGACACCTCCTCACACATTGCGAACGGTGGCAACACCGTCATTAGCCGGGCCGAA 477 consensus_4588#1 AAA----AAATCACCGTTTATGTGG-GAAGAGTGAGTGTAGTGT-AGCAACCCTTCCCAA 437 * * * ** * * * *** *** * ** * * ** ** ** consensus_4588#0 TCGCTCATCCTATCGCCGGAGATGATCGATGACACGCGCAGCAAAAGTGCCGAACCGCAC 537 consensus_4588#1 TTAC----------GACGACACCGAAGGACGGAGAGCG-AGAGAGAGCGAGAAAGAGCG- 485 * * * ** ** ** * *** ** * ** * ** ** consensus_4588#0 GAGGAGGGCGCGGGTGGTGGTACGCGCGATCAGGGCGAAGAGGGCGACGAGGAAACCAAA 597 consensus_4588#1 --GAAGGGTACCGGCATTATCCTGCGGAATTAGGACGA----GGTCAATCGGACAGCAGG 539 * **** * ** * *** ** *** *** ** * *** * ** consensus_4588#0 TCGGATGGGTCGGAGGGCGGCGGCGGCGACCACGAGGCAGCCGGCTTCAA----GTTGTC 653 consensus_4588#1 ATGGGCGGATTGCAGG-CGGCCTGGTCCATCATGTCGATGGTGACGCTGACACCGTTCTT 598 ** ** * * *** **** * * * ** * * * * * * *** * consensus_4588#0 GAACTGTCTCGACTACGTCAAGTCG--GGCATGGAGGCCATCATCGAG 699 consensus_4588#1 CGCCTTCCTATTTTCCATCGTGTTTATGGCATCGATCGGAAAATCGT- 645 ** ** * * ** ** ***** ** * **** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||