cluster # 46

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Anopheles gambiae
cluster # 46 cluster # 46 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_46#0 length = 657 sequences # 1

consensus_46#1 length = 551 sequences # 1

consensusID : consensus_46#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 657
fasta sequence

                              [CCGAAAAATTTTCCAAGCGGATATCATTTACCATCTGTTTGACAAATTCATGGCCTATCGTGAAGAAATCAAGCAGCGCAAACGAGACGAATTTAAAACCATCGCTGTTTTCCCCTGCAAATTAAAGATTCTACCCCAGTGTGTGTTTAACAGTCGTGACCCAATCGTGATGGGTGTGATGGTTGAGGCTGGTATCGTCAAGGAAGGTACGCCAATCACAGTGCCTAGCAAAGAGTTTACAGATATAGGCGTCGTGACGTCGATCGAAGCTAACCATAAACAATTGGAAAGTGCTCGAAAAGGACAAGAAGTGTGCCTCAAAATTGAACCCATACCAGGCGAGACACCTAAAATGTATGGTCGTCATTTCGATGAAACCGACATGCTAGTTAGTAAGATTTCCCGTCAAAGCATCGATGCTTGTAAGGACTATTTCCGGGATGATCTTTTAAAATCCGACTGGACGCTTATGGTGGAGCTGAAGAAGACCTTCCAAATATTGTAGATTGTGTCTATTCATGTTGCCTTCATTTAGATATTGTGTTTTTTTTTTTTTTGTATCATTATTTTTATTTTCGGGATCTTTTCTTCTTTTTGCTCGACTCACAAAGTACACACAAAAAGGAACCATCCCATTGTGATGTTTCACAAAATTAG]

[+] EMBL BM630403             [CCGAAAAATTTTCCAAGCGGATATCATTTACCATCTGTTTGACAAATTCATGGCCTATCGTGAAGAAATCAAGCAGCGCAAACGAGACGAATTTAAAACCATCGCTGTTTTCCCCTGCAAATTAAAGATTCTACCCCAGTGTGTGTTTAACAGTCGTGACCCAATCGTGATGGGTGTGATGGTTGAGGCTGGTATCGTCAAGGAAGGTACGCCAATCACAGTGCCTAGCAAAGAGTTTACAGATATAGGCGTCGTGACGTCGATCGAAGCTAACCATAAACAATTGGAAAGTGCTCGAAAAGGACAAGAAGTGTGCCTCAAAATTGAACCCATACCAGGCGAGACACCTAAAATGTATGGTCGTCATTTCGATGAAACCGACATGCTAGTTAGTAAGATTTCCCGTCAAAGCATCGATGCTTGTAAGGACTATTTCCGGGATGATCTTTTAAAATCCGACTGGACGCTTATGGTGGAGCTGAAGAAGACCTTCCAAATATTGTAGATTGTGTCTATTCATGTTGCCTTCATTTAGATATTGTGTTTTTTTTTTTTTTGTATCATTATTTTTATTTTCGGGATCTTTTCTTCTTTTTGCTCGACTCACAAAGTACACACAAAAAGGAACCATCCCATTGTGATGTTTCACAAAATTAG]




>consensus_46#0
CCGAAAAATTTTCCAAGCGGATATCATTTACCATCTGTTTGACAAATTCATGGCCTATCG
TGAAGAAATCAAGCAGCGCAAACGAGACGAATTTAAAACCATCGCTGTTTTCCCCTGCAA
ATTAAAGATTCTACCCCAGTGTGTGTTTAACAGTCGTGACCCAATCGTGATGGGTGTGAT
GGTTGAGGCTGGTATCGTCAAGGAAGGTACGCCAATCACAGTGCCTAGCAAAGAGTTTAC
AGATATAGGCGTCGTGACGTCGATCGAAGCTAACCATAAACAATTGGAAAGTGCTCGAAA
AGGACAAGAAGTGTGCCTCAAAATTGAACCCATACCAGGCGAGACACCTAAAATGTATGG
TCGTCATTTCGATGAAACCGACATGCTAGTTAGTAAGATTTCCCGTCAAAGCATCGATGC
TTGTAAGGACTATTTCCGGGATGATCTTTTAAAATCCGACTGGACGCTTATGGTGGAGCT
GAAGAAGACCTTCCAAATATTGTAGATTGTGTCTATTCATGTTGCCTTCATTTAGATATT
GTGTTTTTTTTTTTTTTGTATCATTATTTTTATTTTCGGGATCTTTTCTTCTTTTTGCTC
GACTCACAAAGTACACACAAAAAGGAACCATCCCATTGTGATGTTTCACAAAATTAG

consensusID : consensus_46#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 551
fasta sequence

                              [GGAAGCNAGATACGGCACGAGGAAATTATGGCCTATCGTGAAGAAATCAAGCAGCGCAAACGAGACGAATGTAAAACCATCGCTGTTTTCCCCTGCAAATTAAAGATTCTACCCCAGTGTGTGTTTAACAGTCGTGACCCAATCGTGATGGGTGTGATGGTTGAGGCTGGTATCGTCAAGGAAGGTACGCCAATCACAGTGCCTAGCAAAGAGTTTACAGATATAGGCGTCGTGACGTCGATCGAAGCTAACCATAAACAATTGGAAAGTGCTCGAAAAGGACAAGAAGTGTGCCTCAAAATTGAACCCATACCAGGCGAGACACCTAAAATGTATGGTCGTCATTTCGATGAAACCGACATGCTAGTTAGTAAGATTTCCCGTCAAAGCATCGATGCTTGTAAGGACTATTTCCGGGATGATCTTTTAAAATCCGACTGGACGCTTATGGTGGAGCTAAAGAAGACCTTCCAAATATTGTAGATTGTGTCTATGGACGTTGCCTTCATTTAGATATTGGTTTTTTATATTATTATTTTTATTTTCGGTAT]

[+] EMBL BX619874             [GGAAGCNAGATACGGCACGAGGAAATTATGGCCTATCGTGAAGAAATCAAGCAGCGCAAACGAGACGAATGTAAAACCATCGCTGTTTTCCCCTGCAAATTAAAGATTCTACCCCAGTGTGTGTTTAACAGTCGTGACCCAATCGTGATGGGTGTGATGGTTGAGGCTGGTATCGTCAAGGAAGGTACGCCAATCACAGTGCCTAGCAAAGAGTTTACAGATATAGGCGTCGTGACGTCGATCGAAGCTAACCATAAACAATTGGAAAGTGCTCGAAAAGGACAAGAAGTGTGCCTCAAAATTGAACCCATACCAGGCGAGACACCTAAAATGTATGGTCGTCATTTCGATGAAACCGACATGCTAGTTAGTAAGATTTCCCGTCAAAGCATCGATGCTTGTAAGGACTATTTCCGGGATGATCTTTTAAAATCCGACTGGACGCTTATGGTGGAGCTAAAGAAGACCTTCCAAATATTGTAGATTGTGTCTATGGACGTTGCCTTCATTTAGATATTGGTTTTTTATATTATTATTTTTATTTTCGGTAT]




>consensus_46#1
GGAAGCNAGATACGGCACGAGGAAATTATGGCCTATCGTGAAGAAATCAAGCAGCGCAAA
CGAGACGAATGTAAAACCATCGCTGTTTTCCCCTGCAAATTAAAGATTCTACCCCAGTGT
GTGTTTAACAGTCGTGACCCAATCGTGATGGGTGTGATGGTTGAGGCTGGTATCGTCAAG
GAAGGTACGCCAATCACAGTGCCTAGCAAAGAGTTTACAGATATAGGCGTCGTGACGTCG
ATCGAAGCTAACCATAAACAATTGGAAAGTGCTCGAAAAGGACAAGAAGTGTGCCTCAAA
ATTGAACCCATACCAGGCGAGACACCTAAAATGTATGGTCGTCATTTCGATGAAACCGAC
ATGCTAGTTAGTAAGATTTCCCGTCAAAGCATCGATGCTTGTAAGGACTATTTCCGGGAT
GATCTTTTAAAATCCGACTGGACGCTTATGGTGGAGCTAAAGAAGACCTTCCAAATATTG
TAGATTGTGTCTATGGACGTTGCCTTCATTTAGATATTGGTTTTTTATATTATTATTTTT
ATTTTCGGTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_46#0      CCGAAAAATTTTCCAAGCGGATATCATTTACCATCTGTTTGACAAATTCATGGCCTATCG 60
consensus_46#1      ------------------GGAAGCNAGATAC----GGCACGAGGAAATTATGGCCTATCG 38
                                      ***    *  ***     *   **  ** * ***********

consensus_46#0      TGAAGAAATCAAGCAGCGCAAACGAGACGAATTTAAAACCATCGCTGTTTTCCCCTGCAA 120
consensus_46#1      TGAAGAAATCAAGCAGCGCAAACGAGACGAATGTAAAACCATCGCTGTTTTCCCCTGCAA 98
                    ******************************** ***************************

consensus_46#0      ATTAAAGATTCTACCCCAGTGTGTGTTTAACAGTCGTGACCCAATCGTGATGGGTGTGAT 180
consensus_46#1      ATTAAAGATTCTACCCCAGTGTGTGTTTAACAGTCGTGACCCAATCGTGATGGGTGTGAT 158
                    ************************************************************

consensus_46#0      GGTTGAGGCTGGTATCGTCAAGGAAGGTACGCCAATCACAGTGCCTAGCAAAGAGTTTAC 240
consensus_46#1      GGTTGAGGCTGGTATCGTCAAGGAAGGTACGCCAATCACAGTGCCTAGCAAAGAGTTTAC 218
                    ************************************************************

consensus_46#0      AGATATAGGCGTCGTGACGTCGATCGAAGCTAACCATAAACAATTGGAAAGTGCTCGAAA 300
consensus_46#1      AGATATAGGCGTCGTGACGTCGATCGAAGCTAACCATAAACAATTGGAAAGTGCTCGAAA 278
                    ************************************************************

consensus_46#0      AGGACAAGAAGTGTGCCTCAAAATTGAACCCATACCAGGCGAGACACCTAAAATGTATGG 360
consensus_46#1      AGGACAAGAAGTGTGCCTCAAAATTGAACCCATACCAGGCGAGACACCTAAAATGTATGG 338
                    ************************************************************

consensus_46#0      TCGTCATTTCGATGAAACCGACATGCTAGTTAGTAAGATTTCCCGTCAAAGCATCGATGC 420
consensus_46#1      TCGTCATTTCGATGAAACCGACATGCTAGTTAGTAAGATTTCCCGTCAAAGCATCGATGC 398
                    ************************************************************

consensus_46#0      TTGTAAGGACTATTTCCGGGATGATCTTTTAAAATCCGACTGGACGCTTATGGTGGAGCT 480
consensus_46#1      TTGTAAGGACTATTTCCGGGATGATCTTTTAAAATCCGACTGGACGCTTATGGTGGAGCT 458
                    ************************************************************

consensus_46#0      GAAGAAGACCTTCCAAATATTGTAGATTGTGTCTATTCATGTTGCCTTCATTTAGATATT 540
consensus_46#1      AAAGAAGACCTTCCAAATATTGTAGATTGTGTCTATGGACGTTGCCTTCATTTAGATATT 518
                     ***********************************  * ********************

consensus_46#0      GTGTTTTTTTTTTTTTTGTATCATTATTTTTATTTTCGGGATCTTTTCTTCTTTTTGCTC 600
consensus_46#1      GG---------TTTTTTATATTATTATTTTTATTTTCGGTAT------------------ 551
                    *          ****** *** ***************** **                  

consensus_46#0      GACTCACAAAGTACACACAAAAAGGAACCATCCCATTGTGATGTTTCACAAAATTAG 657
consensus_46#1      ---------------------------------------------------------