These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4600#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 710 fasta sequence [GTGGCAGCAGGTGGCGATGGCTAGTGGTTGTGGGTGACACATCGTAGTTCCTTCATTTCAATTTCATTCCTTCTCGAGCTCTGTGCGTTGGAAAAAGAAGGGGATTTTAGAGGGTGGAGCAACAAATTCCAAATGGCAATACAGGCGCGACACACTCAAGAGCCTCAGCCTTCCTACCCCCCCGTACCCGTACACCCGAAAGCAGTTCATGGGGGATTATTCAGCAGCAGCAGCAGCACCACCGAGAACCGTTTGCTCCACTGTTGCTAATTGTTTCGGCCACCTTCTGGGTTCTACTGTAGGCGCCCCCCGCCAGCTATAATGGTGTGTTACATTTGTCGCTTAGTCGCTTGAACGTCTTGTCAAACAAAACGCCCGAAAGAAGTTACAACTTTTCCCAAAAAAGAACAAAAACAAACGGCCCCAATATATCCCCCCTACAAGTTGCCACACTTGAAAGACACAAACTCCGAACACGGTGTGCAAGCAAATAGAGCACATACCAATAGCGCATTACTTTAGCATTCCTGATGGTGGGCCCTCTTCTGTACATGATCGAGAGAAAGGGATGGGAANGGAAGGTGGGGGCAATCTGTTTAGGGTAGATGGGTATGTTTTACACATAGAAACGCTTAGAACAGAACAGAATGGNCCTCCTGTTTGGCACGAAAAACACACAAAATTCGACNATGGGAAGTTAGTGAGAGTTA] [+] EMBL BX620993 [GTGGCAGCAGGTGGCGATGGCTAGTGGTTGTGGGTGACACATCGTAGTTCCTTCATTTCAATTTCATTCCTTCTCGAGCTCTGTGCGTTGGAAAAAGAAGGGGATTTTAGAGGGTGGAGCAACAAATTCCAAATGGCAATACAGGCGCGACACACTCAAGAGCCTCAGCCTTCCTACCCCCCCGTACCCGTACACCCGAAAGCAGTTCATGGGGGATTATTCAGCAGCAGCAGCAGCACCACCGAGAACCGTTTGCTCCACTGTTGCTAATTGTTTCGGCCACCTTCTGGGTTCTACTGTAGGCGCCCCCCGCCAGCTATAATGGTGTGTTACATTTGTCGCTTAGTCGCTTGAACGTCTTGTCAAACAAAACGCCCGAAAGAAGTTACAACTTTTCCCAAAAAAGAACAAAAACAAACGGCCCCAATATATCCCCCCTACAAGTTGCCACACTTGAAAGACACAAACTCCGAACACGGTGTGCAAGCAAATAGAGCACATACCAATAGCGCATTACTTTAGCATTCCTGATGGTGGGCCCTCTTCTGTACATGATCGAGAGAAAGGGATGGGAANGGAAGGTGGGGGCAATCTGTTTAGGGTAGATGGGTATGTTTTACACATAGAAACGCTTAGAACAGAACAGAATGGNCCTCCTGTTTGGCACGAAAAACACACAAAATTCGACNATGGGAAGTTAGTGAGAGTTA] [+] EMBL BM583326 [ ccgTGGCTAGTGGTTGTGGGTGACACATCGTAGTTCCTTCATTTCAATTTCATTCCTTCTCGAGCTCTGTGCGTTGGAAAAAGAAGGGGATTTTAGAGGGTGGAGCAACAAATTCCAAATGGCAATACAGGCGCGACACACTCAAGAGCCTCAGCCTTCCTACCCCCCCGTACCCGTACACCCGAAAGCAGTTCATGGGGGATTATTCAGCAGCAGCAGCAGCACCACCGAGAACCGTTTGCTCCACTGTTGCTAATTGTTTCGGCCACCTTCTGGGTTCTACTGTAGGCGCCCCCCGCCAGCTATAATGGTGTGTTACATTTGTCGCTTAGTCGCTTGAACGTCTTGTCAAACAAAACGCCCGAAAGAAGTTACAACTTTTCCCAAAAAAGAACAAAAACAAACGGCCCCAATATATCCCCCCTACAAGTTGCCACACTTGAAAGACACAAACTCCGAACACGGTGTGCAAGCAAATAGAGCACATACCAATAGCGCATTACTTTAGCATTCCTGATGGTGGGCCCTCTTCTGTACATGATCGAGAGAAAGGGATGGGAAGGGAAGGTGGGGGCAATCTGTTTAGGGTAGATGGTTATGTTTTACACATAGAAACGCTTAGAACAGAACA ] consensusID : consensus_4600#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 449 fasta sequence [GCAAGCAGCAAGATAAAGGCACAGTAAAAAGGCCCCAACCACCGGCAAAAAGAGAGCAGCGACGACCCCTTGCGGCTAAATTTCTTTCCAAAGGCGTAAAGGGATGAGGAGAGGGGGGGGGGCGGGGGCTGTAGAAGCAGCAGAAGGTGGCAGCAGGTAGCGATTGCCTAGTGGTTGTGGGTGACACATCGTAGTTCCTTCATTTCAATTCCATTCCTTCTCGAGCTCTGTGCGTTGGAAAAAGAAGAAGGGGTTTCTAGAGGGTGGAGCAACAAATTCCAAATGGCAATACAGGCGCGACACACTCAGGAGCCTCAGCCCTCCTACCCCCCGTACCCGTACACCCGTAAGCAGTTCATGGGGATTATCCAGCAGCAGCAGCACCACAGAGAACCGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGGTTTT] [+] EMBL CNS08XJD [GCAAGCAGCAAGATAAAGGCACAGTAAAAAGGCCCCAACCACCGGCAAAAAGAGAGCAGCGACGACCCCTTGCGGCTAAATTTCTTTCCAAAGGCGTAAAGGGATGAGGAGAGGGGGGGGGGCGGGGGCTGTAGAAGCAGCAGAAGGTGGCAGCAGGTAGCGATTGCCTAGTGGTTGTGGGTGACACATCGTAGTTCCTTCATTTCAATTCCATTCCTTCTCGAGCTCTGTGCGTTGGAAAAAGAAGAAGGGGTTTCTAGAGGGTGGAGCAACAAATTCCAAATGGCAATACAGGCGCGACACACTCAGGAGCCTCAGCCCTCCTACCCCCCGTACCCGTACACCCGTAAGCAGTTCATGGGGATTATCCAGCAGCAGCAGCACCACAGAGAACCGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGGTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4600#0 ------------------------------------------------------------ consensus_4600#1 GCAAGCAGCAAGATAAAGGCACAGTAAAAAGGCCCCAACCACCGGCAAAAAGAGAGCAGC 60 consensus_4600#0 ------------------------------------------------------------ consensus_4600#1 GACGACCCCTTGCGGCTAAATTTCTTTCCAAAGGCGTAAAGGGATGAGGAGAGGGGGGGG 120 consensus_4600#0 --------------------------GTGGCAGCAGGTGGCGATGGC-TAGTGGTTGTGG 33 consensus_4600#1 GGCGGGGGCTGTAGAAGCAGCAGAAGGTGGCAGCAGGTAGCGATTGCCTAGTGGTTGTGG 180 ************ ***** ** ************ consensus_4600#0 GTGACACATCGTAGTTCCTTCATTTCAATTTCATTCCTTCTCGAGCTCTGTGCGTTGGAA 93 consensus_4600#1 GTGACACATCGTAGTTCCTTCATTTCAATTCCATTCCTTCTCGAGCTCTGTGCGTTGGAA 240 ****************************** ***************************** consensus_4600#0 AAAGAAG---GGGATTTTAGAGGGTGGAGCAACAAATTCCAAATGGCAATACAGGCGCGA 150 consensus_4600#1 AAAGAAGAAGGGGTTTCTAGAGGGTGGAGCAACAAATTCCAAATGGCAATACAGGCGCGA 300 ******* *** ** ******************************************* consensus_4600#0 CACACTCAAGAGCCTCAGCCTTCCTACCCCCCCGTACCCGTACACCCGAAAGCAGTTCAT 210 consensus_4600#1 CACACTCAGGAGCCTCAGCCCTCCTACCCCCC-GTACCCGTACACCCGTAAGCAGTTCAT 359 ******** *********** *********** *************** *********** consensus_4600#0 GGGGGATTATTCAGCAGCAGCAGCAGCACCACCGAGAACCGTTTGCTCCACTGTTGCTAA 270 consensus_4600#1 GGGG-ATTATCCAGCAGCAGCAGC---ACCACAGAGAACCGTTAAAAAAAAAAAAAAAAA 415 **** ***** ************* ***** ********** * ** consensus_4600#0 TTGTTTCGGCCA----CCTTCTGGGTTCTACTGTAGGCGCCCCCCGCCAGCTATAATGGT 326 consensus_4600#1 AAAAAAAAAAAAAAGGCCACATGTGCCCGGTTTT-------------------------- 449 * ** ** * * * * consensus_4600#0 GTGTTACATTTGTCGCTTAGTCGCTTGAACGTCTTGTCAAACAAAACGCCCGAAAGAAGT 386 consensus_4600#1 ------------------------------------------------------------ consensus_4600#0 TACAACTTTTCCCAAAAAAGAACAAAAACAAACGGCCCCAATATATCCCCCCTACAAGTT 446 consensus_4600#1 ------------------------------------------------------------ consensus_4600#0 GCCACACTTGAAAGACACAAACTCCGAACACGGTGTGCAAGCAAATAGAGCACATACCAA 506 consensus_4600#1 ------------------------------------------------------------ consensus_4600#0 TAGCGCATTACTTTAGCATTCCTGATGGTGGGCCCTCTTCTGTACATGATCGAGAGAAAG 566 consensus_4600#1 ------------------------------------------------------------ consensus_4600#0 GGATGGGAANGGAAGGTGGGGGCAATCTGTTTAGGGTAGATGGGTATGTTTTACACATAG 626 consensus_4600#1 ------------------------------------------------------------ consensus_4600#0 AAACGCTTAGAACAGAACAGAATGGNCCTCCTGTTTGGCACGAAAAACACACAAAATTCG 686 consensus_4600#1 ------------------------------------------------------------ consensus_4600#0 ACNATGGGAAGTTAGTGAGAGTTA 710 consensus_4600#1 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||