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Anopheles gambiae
cluster # 4611 cluster # 4611       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4611#0 length = 989 sequences # 2  
consensus_4611#1 length = 551 sequences # 1  

consensusID : consensus_4611#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 989
fasta sequence
                              [CGAAAGTGACATCTACTCCAAGCTGAACGATTTCGATGTGGTGTTTGAAAATCCGGCCGAACGGCCCGACCCGATTCGAGCGGCCGTAGCAGCGGCGGCCGCTCCCGTGCCCGATTTCGACCCCCTTCTTCCGAGGCAGCAGCCGTCCAGTGGCGCCGGCGGACGCAAGGTTCTGACGAGCGACAACAGTACCGATTCGTTCGCTTCCTCCACGGCCACGTCCAGCGGAGCGCCGGTGTCTTCCGGCGCGAATGGAGACGAAGGTGGTGGGCAGCGCGATCACGGCGCTAGCACGGTGCCGTAGCTCAGCACGTGCAAGATATTGCAGCGCAAGCTGGAGCTGAAGGTGGAACGCGCCAAACGCAACTACCGCCAGATGTACCACGATGGGGGACAGGTAGGTCGGCACGTGTTTGGCATCGTGCAATGAAGGTTGAATTTACTATAAAAAAAACCCACCAAACCGATTCCATTCAGCAGGATCCAATCGAAAAGGAGCCGAAGATTAGCAGCCTCATACCGATCTCGCGCCTTCCGATACCGGCCGGGCGGGAAAGCCACCAGCTGGTGGACGTCAACACCGGCTTCAACAGTGACGACGAGCTCGAGAATGTGTCCTTCTTTCCGCGCCCCAATCGGAAGGGCAGCGGCGGGGGCAGCACGCGCCAGGAGCTGTCCGACACGTTCAGCATCCAGGAGATGACGATCGAGTCGGACAACGACGAGCTGGACTTTGAGCAGTGCCGCAAGATGTCGGACAGCAAGGGCTACCGGAAGATACTGAACCGCGGGTGCTCGGGCGCGGCCGGCAAGGACGACTATCTGGACAACGATACGCTGGACGAGGATGACGATTCGCAGAACCTGGAGCTGCTGCCACCGAAGGGCGGCGGTTACGCGCTGAAGGAGCAGCTGCGGCGACTGTTTTGCTGCTGCTTCGTAAAGAGTAACGATTTCCTGTGATGTGATGGACAGCACTCGTTCGTTTA]

[+] EMBL BX618627             [CGAAAGTGACATCTACTCCAAGCTGAACGATTTCGATGTGGTGTTTGAAAATCCGGCCGAACGGCCCGACCCGATTCGAGCGGCCGTAGCAGCGGCGGCCGCTCCCGTGCCCGATTTCGACCCCCTTCTTCCGAGGCAGCAGCCGTCCAGTGGCGCCGGCGGACGCAAGGTTCTGACGAGCGACAACAGTACCGATTCGTTCGCTTCCTCCACGGCCACGTCCAGCGGAGCGCCGGTGTCTTCCGGCGCGAATGGAGACGAAGGTGGTGGGCAGCGCGATCACGGCGCTAGCACGGTGCCGTAGCTCAGCACGTGCAAGATATTGCAGCGCAAGCTGGAGCTGAAGGTGGAACGCGCCAAACGCAACTACCGCCAGATGTACCACGATGGGGGACAGGTAGGTCGGCACGTGTTTGGCATCGTGCAATGAAGGTTGAATTTACTATAAAAAAAACCCACCAAACCGATTCCATTCAGCAGGATCCAATCGAAAAGGAGCCGAAGATTAGCAGCCTCATACCGATCTCGCGCCTTCCGATACCGGCCGGGCGGGAAAGCCACCAGCTGGTGGACGTCAACACCGGCTTCAACAGTGACGACGAGCTCGAGAATGTGTCCT                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BX614225             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CGTCAACACCGGCTTCAACAGTGACGACGAGCTCGAGAATGTGTCCTTCTTTCCGCGCCCCAATCGGAAGGGCAGCGGCGGGGGCAGCACGCGCCAGGAGCTGTCCGACACGTTCAGCATCCAGGAGATGACGATCGAGTCGGACAACGACGAGCTGGACTTTGAGCAGTGCCGCAAGATGTCGGACAGCAAGGGCTACCGGAAGATACTGAACCGCGGGTGCTCGGGCGCGGCCGGCAAGGACGACTATCTGGACAACGATACGCTGGACGAGGATGACGATTCGCAGAACCTGGAGCTGCTGCCACCGAAGGGCGGCGGTTACGCGCTGAAGGAGCAGCTGCGGCGACTGTTTTGCTGCTGCTTCGTAAAGAGTAACGATTTCCTGTGATGTGATGGACAGCACTCGTTCGTTTA]


>consensus_4611#0 CGAAAGTGACATCTACTCCAAGCTGAACGATTTCGATGTGGTGTTTGAAAATCCGGCCGA ACGGCCCGACCCGATTCGAGCGGCCGTAGCAGCGGCGGCCGCTCCCGTGCCCGATTTCGA CCCCCTTCTTCCGAGGCAGCAGCCGTCCAGTGGCGCCGGCGGACGCAAGGTTCTGACGAG CGACAACAGTACCGATTCGTTCGCTTCCTCCACGGCCACGTCCAGCGGAGCGCCGGTGTC TTCCGGCGCGAATGGAGACGAAGGTGGTGGGCAGCGCGATCACGGCGCTAGCACGGTGCC GTAGCTCAGCACGTGCAAGATATTGCAGCGCAAGCTGGAGCTGAAGGTGGAACGCGCCAA ACGCAACTACCGCCAGATGTACCACGATGGGGGACAGGTAGGTCGGCACGTGTTTGGCAT CGTGCAATGAAGGTTGAATTTACTATAAAAAAAACCCACCAAACCGATTCCATTCAGCAG GATCCAATCGAAAAGGAGCCGAAGATTAGCAGCCTCATACCGATCTCGCGCCTTCCGATA CCGGCCGGGCGGGAAAGCCACCAGCTGGTGGACGTCAACACCGGCTTCAACAGTGACGAC GAGCTCGAGAATGTGTCCTTCTTTCCGCGCCCCAATCGGAAGGGCAGCGGCGGGGGCAGC ACGCGCCAGGAGCTGTCCGACACGTTCAGCATCCAGGAGATGACGATCGAGTCGGACAAC GACGAGCTGGACTTTGAGCAGTGCCGCAAGATGTCGGACAGCAAGGGCTACCGGAAGATA CTGAACCGCGGGTGCTCGGGCGCGGCCGGCAAGGACGACTATCTGGACAACGATACGCTG GACGAGGATGACGATTCGCAGAACCTGGAGCTGCTGCCACCGAAGGGCGGCGGTTACGCG CTGAAGGAGCAGCTGCGGCGACTGTTTTGCTGCTGCTTCGTAAAGAGTAACGATTTCCTG TGATGTGATGGACAGCACTCGTTCGTTTA



consensusID : consensus_4611#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 551
fasta sequence
                              [ACGAAGGTGGTGGGCAGCGCGATCACGGCGCTAGCACGGTGCCGCAGCTCAGCACGTGCAAGATATTGCAGCGCAAGCTGGAGCTGAAGGTGGAACGCGCCAAACGCAACTACCGCCAGATGTACCACGATGGGGGACAGCAGGATCCAATCGAAAAGGAGCCGAAGATTAGCAGCCTCATACCGATCTCGCGCCTTCCGATACCGGCCGGGCGGGAAAGCCACCAGCTGGTGGACGTCAACACCGGCTTCAACAGTGACGACGAGCTCGAGAATGTGTCCTTCTTTCCGCGCCCCAATCGGAAGGGCAGCGGCGGGGGCAGCACGCGCCAGGAGCTGTCCGACACGTTCAGCATCCAGGAGATGACGATCGAGTCGGACAACGACGAGCTGGACTTTGAGCAGTGCCGCAAGATGTCGGACAGCAAGGGCTACCGGAAGATACTGAACCGCGGGTGCTCGGGCGCGGCCGGCAAGGACGACTATCTGGACAACGATACGCTGGACGAGGATGACGATTCGCAGAACCTGGAGCTGCTGCCACCGAAGGGC]

[+] EMBL BX617545             [ACGAAGGTGGTGGGCAGCGCGATCACGGCGCTAGCACGGTGCCGCAGCTCAGCACGTGCAAGATATTGCAGCGCAAGCTGGAGCTGAAGGTGGAACGCGCCAAACGCAACTACCGCCAGATGTACCACGATGGGGGACAGCAGGATCCAATCGAAAAGGAGCCGAAGATTAGCAGCCTCATACCGATCTCGCGCCTTCCGATACCGGCCGGGCGGGAAAGCCACCAGCTGGTGGACGTCAACACCGGCTTCAACAGTGACGACGAGCTCGAGAATGTGTCCTTCTTTCCGCGCCCCAATCGGAAGGGCAGCGGCGGGGGCAGCACGCGCCAGGAGCTGTCCGACACGTTCAGCATCCAGGAGATGACGATCGAGTCGGACAACGACGAGCTGGACTTTGAGCAGTGCCGCAAGATGTCGGACAGCAAGGGCTACCGGAAGATACTGAACCGCGGGTGCTCGGGCGCGGCCGGCAAGGACGACTATCTGGACAACGATACGCTGGACGAGGATGACGATTCGCAGAACCTGGAGCTGCTGCCACCGAAGGGC]


>consensus_4611#1 ACGAAGGTGGTGGGCAGCGCGATCACGGCGCTAGCACGGTGCCGCAGCTCAGCACGTGCA AGATATTGCAGCGCAAGCTGGAGCTGAAGGTGGAACGCGCCAAACGCAACTACCGCCAGA TGTACCACGATGGGGGACAGCAGGATCCAATCGAAAAGGAGCCGAAGATTAGCAGCCTCA TACCGATCTCGCGCCTTCCGATACCGGCCGGGCGGGAAAGCCACCAGCTGGTGGACGTCA ACACCGGCTTCAACAGTGACGACGAGCTCGAGAATGTGTCCTTCTTTCCGCGCCCCAATC GGAAGGGCAGCGGCGGGGGCAGCACGCGCCAGGAGCTGTCCGACACGTTCAGCATCCAGG AGATGACGATCGAGTCGGACAACGACGAGCTGGACTTTGAGCAGTGCCGCAAGATGTCGG ACAGCAAGGGCTACCGGAAGATACTGAACCGCGGGTGCTCGGGCGCGGCCGGCAAGGACG ACTATCTGGACAACGATACGCTGGACGAGGATGACGATTCGCAGAACCTGGAGCTGCTGC CACCGAAGGGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4611#0      CGAAAGTGACATCTACTCCAAGCTGAACGATTTCGATGTGGTGTTTGAAAATCCGGCCGA 60
consensus_4611#1      ------------------------------------------------------------
                                                                                  

consensus_4611#0      ACGGCCCGACCCGATTCGAGCGGCCGTAGCAGCGGCGGCCGCTCCCGTGCCCGATTTCGA 120
consensus_4611#1      ------------------------------------------------------------
                                                                                  

consensus_4611#0      CCCCCTTCTTCCGAGGCAGCAGCCGTCCAGTGGCGCCGGCGGACGCAAGGTTCTGACGAG 180
consensus_4611#1      ------------------------------------------------------------
                                                                                  

consensus_4611#0      CGACAACAGTACCGATTCGTTCGCTTCCTCCACGGCCACGTCCAGCGGAGCGCCGGTGTC 240
consensus_4611#1      ------------------------------------------------------------
                                                                                  

consensus_4611#0      TTCCGGCGCGAATGGAGACGAAGGTGGTGGGCAGCGCGATCACGGCGCTAGCACGGTGCC 300
consensus_4611#1      -----------------ACGAAGGTGGTGGGCAGCGCGATCACGGCGCTAGCACGGTGCC 43
                                       *******************************************

consensus_4611#0      GTAGCTCAGCACGTGCAAGATATTGCAGCGCAAGCTGGAGCTGAAGGTGGAACGCGCCAA 360
consensus_4611#1      GCAGCTCAGCACGTGCAAGATATTGCAGCGCAAGCTGGAGCTGAAGGTGGAACGCGCCAA 103
                      * **********************************************************

consensus_4611#0      ACGCAACTACCGCCAGATGTACCACGATGGGGGACAGGTAGGTCGGCACGTGTTTGGCAT 420
consensus_4611#1      ACGCAACTACCGCCAGATGTACCACGATGGGGGACAG----------------------- 140
                      *************************************                       

consensus_4611#0      CGTGCAATGAAGGTTGAATTTACTATAAAAAAAACCCACCAAACCGATTCCATTCAGCAG 480
consensus_4611#1      ---------------------------------------------------------CAG 143
                                                                               ***

consensus_4611#0      GATCCAATCGAAAAGGAGCCGAAGATTAGCAGCCTCATACCGATCTCGCGCCTTCCGATA 540
consensus_4611#1      GATCCAATCGAAAAGGAGCCGAAGATTAGCAGCCTCATACCGATCTCGCGCCTTCCGATA 203
                      ************************************************************

consensus_4611#0      CCGGCCGGGCGGGAAAGCCACCAGCTGGTGGACGTCAACACCGGCTTCAACAGTGACGAC 600
consensus_4611#1      CCGGCCGGGCGGGAAAGCCACCAGCTGGTGGACGTCAACACCGGCTTCAACAGTGACGAC 263
                      ************************************************************

consensus_4611#0      GAGCTCGAGAATGTGTCCTTCTTTCCGCGCCCCAATCGGAAGGGCAGCGGCGGGGGCAGC 660
consensus_4611#1      GAGCTCGAGAATGTGTCCTTCTTTCCGCGCCCCAATCGGAAGGGCAGCGGCGGGGGCAGC 323
                      ************************************************************

consensus_4611#0      ACGCGCCAGGAGCTGTCCGACACGTTCAGCATCCAGGAGATGACGATCGAGTCGGACAAC 720
consensus_4611#1      ACGCGCCAGGAGCTGTCCGACACGTTCAGCATCCAGGAGATGACGATCGAGTCGGACAAC 383
                      ************************************************************

consensus_4611#0      GACGAGCTGGACTTTGAGCAGTGCCGCAAGATGTCGGACAGCAAGGGCTACCGGAAGATA 780
consensus_4611#1      GACGAGCTGGACTTTGAGCAGTGCCGCAAGATGTCGGACAGCAAGGGCTACCGGAAGATA 443
                      ************************************************************

consensus_4611#0      CTGAACCGCGGGTGCTCGGGCGCGGCCGGCAAGGACGACTATCTGGACAACGATACGCTG 840
consensus_4611#1      CTGAACCGCGGGTGCTCGGGCGCGGCCGGCAAGGACGACTATCTGGACAACGATACGCTG 503
                      ************************************************************

consensus_4611#0      GACGAGGATGACGATTCGCAGAACCTGGAGCTGCTGCCACCGAAGGGCGGCGGTTACGCG 900
consensus_4611#1      GACGAGGATGACGATTCGCAGAACCTGGAGCTGCTGCCACCGAAGGGC------------ 551
                      ************************************************            

consensus_4611#0      CTGAAGGAGCAGCTGCGGCGACTGTTTTGCTGCTGCTTCGTAAAGAGTAACGATTTCCTG 960
consensus_4611#1      ------------------------------------------------------------
                                                                                  

consensus_4611#0      TGATGTGATGGACAGCACTCGTTCGTTTA 989
consensus_4611#1      -----------------------------
                                                   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)