These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4611#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 989 fasta sequence [CGAAAGTGACATCTACTCCAAGCTGAACGATTTCGATGTGGTGTTTGAAAATCCGGCCGAACGGCCCGACCCGATTCGAGCGGCCGTAGCAGCGGCGGCCGCTCCCGTGCCCGATTTCGACCCCCTTCTTCCGAGGCAGCAGCCGTCCAGTGGCGCCGGCGGACGCAAGGTTCTGACGAGCGACAACAGTACCGATTCGTTCGCTTCCTCCACGGCCACGTCCAGCGGAGCGCCGGTGTCTTCCGGCGCGAATGGAGACGAAGGTGGTGGGCAGCGCGATCACGGCGCTAGCACGGTGCCGTAGCTCAGCACGTGCAAGATATTGCAGCGCAAGCTGGAGCTGAAGGTGGAACGCGCCAAACGCAACTACCGCCAGATGTACCACGATGGGGGACAGGTAGGTCGGCACGTGTTTGGCATCGTGCAATGAAGGTTGAATTTACTATAAAAAAAACCCACCAAACCGATTCCATTCAGCAGGATCCAATCGAAAAGGAGCCGAAGATTAGCAGCCTCATACCGATCTCGCGCCTTCCGATACCGGCCGGGCGGGAAAGCCACCAGCTGGTGGACGTCAACACCGGCTTCAACAGTGACGACGAGCTCGAGAATGTGTCCTTCTTTCCGCGCCCCAATCGGAAGGGCAGCGGCGGGGGCAGCACGCGCCAGGAGCTGTCCGACACGTTCAGCATCCAGGAGATGACGATCGAGTCGGACAACGACGAGCTGGACTTTGAGCAGTGCCGCAAGATGTCGGACAGCAAGGGCTACCGGAAGATACTGAACCGCGGGTGCTCGGGCGCGGCCGGCAAGGACGACTATCTGGACAACGATACGCTGGACGAGGATGACGATTCGCAGAACCTGGAGCTGCTGCCACCGAAGGGCGGCGGTTACGCGCTGAAGGAGCAGCTGCGGCGACTGTTTTGCTGCTGCTTCGTAAAGAGTAACGATTTCCTGTGATGTGATGGACAGCACTCGTTCGTTTA] [+] EMBL BX618627 [CGAAAGTGACATCTACTCCAAGCTGAACGATTTCGATGTGGTGTTTGAAAATCCGGCCGAACGGCCCGACCCGATTCGAGCGGCCGTAGCAGCGGCGGCCGCTCCCGTGCCCGATTTCGACCCCCTTCTTCCGAGGCAGCAGCCGTCCAGTGGCGCCGGCGGACGCAAGGTTCTGACGAGCGACAACAGTACCGATTCGTTCGCTTCCTCCACGGCCACGTCCAGCGGAGCGCCGGTGTCTTCCGGCGCGAATGGAGACGAAGGTGGTGGGCAGCGCGATCACGGCGCTAGCACGGTGCCGTAGCTCAGCACGTGCAAGATATTGCAGCGCAAGCTGGAGCTGAAGGTGGAACGCGCCAAACGCAACTACCGCCAGATGTACCACGATGGGGGACAGGTAGGTCGGCACGTGTTTGGCATCGTGCAATGAAGGTTGAATTTACTATAAAAAAAACCCACCAAACCGATTCCATTCAGCAGGATCCAATCGAAAAGGAGCCGAAGATTAGCAGCCTCATACCGATCTCGCGCCTTCCGATACCGGCCGGGCGGGAAAGCCACCAGCTGGTGGACGTCAACACCGGCTTCAACAGTGACGACGAGCTCGAGAATGTGTCCT ] [+] EMBL BX614225 [ CGTCAACACCGGCTTCAACAGTGACGACGAGCTCGAGAATGTGTCCTTCTTTCCGCGCCCCAATCGGAAGGGCAGCGGCGGGGGCAGCACGCGCCAGGAGCTGTCCGACACGTTCAGCATCCAGGAGATGACGATCGAGTCGGACAACGACGAGCTGGACTTTGAGCAGTGCCGCAAGATGTCGGACAGCAAGGGCTACCGGAAGATACTGAACCGCGGGTGCTCGGGCGCGGCCGGCAAGGACGACTATCTGGACAACGATACGCTGGACGAGGATGACGATTCGCAGAACCTGGAGCTGCTGCCACCGAAGGGCGGCGGTTACGCGCTGAAGGAGCAGCTGCGGCGACTGTTTTGCTGCTGCTTCGTAAAGAGTAACGATTTCCTGTGATGTGATGGACAGCACTCGTTCGTTTA] consensusID : consensus_4611#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 551 fasta sequence [ACGAAGGTGGTGGGCAGCGCGATCACGGCGCTAGCACGGTGCCGCAGCTCAGCACGTGCAAGATATTGCAGCGCAAGCTGGAGCTGAAGGTGGAACGCGCCAAACGCAACTACCGCCAGATGTACCACGATGGGGGACAGCAGGATCCAATCGAAAAGGAGCCGAAGATTAGCAGCCTCATACCGATCTCGCGCCTTCCGATACCGGCCGGGCGGGAAAGCCACCAGCTGGTGGACGTCAACACCGGCTTCAACAGTGACGACGAGCTCGAGAATGTGTCCTTCTTTCCGCGCCCCAATCGGAAGGGCAGCGGCGGGGGCAGCACGCGCCAGGAGCTGTCCGACACGTTCAGCATCCAGGAGATGACGATCGAGTCGGACAACGACGAGCTGGACTTTGAGCAGTGCCGCAAGATGTCGGACAGCAAGGGCTACCGGAAGATACTGAACCGCGGGTGCTCGGGCGCGGCCGGCAAGGACGACTATCTGGACAACGATACGCTGGACGAGGATGACGATTCGCAGAACCTGGAGCTGCTGCCACCGAAGGGC] [+] EMBL BX617545 [ACGAAGGTGGTGGGCAGCGCGATCACGGCGCTAGCACGGTGCCGCAGCTCAGCACGTGCAAGATATTGCAGCGCAAGCTGGAGCTGAAGGTGGAACGCGCCAAACGCAACTACCGCCAGATGTACCACGATGGGGGACAGCAGGATCCAATCGAAAAGGAGCCGAAGATTAGCAGCCTCATACCGATCTCGCGCCTTCCGATACCGGCCGGGCGGGAAAGCCACCAGCTGGTGGACGTCAACACCGGCTTCAACAGTGACGACGAGCTCGAGAATGTGTCCTTCTTTCCGCGCCCCAATCGGAAGGGCAGCGGCGGGGGCAGCACGCGCCAGGAGCTGTCCGACACGTTCAGCATCCAGGAGATGACGATCGAGTCGGACAACGACGAGCTGGACTTTGAGCAGTGCCGCAAGATGTCGGACAGCAAGGGCTACCGGAAGATACTGAACCGCGGGTGCTCGGGCGCGGCCGGCAAGGACGACTATCTGGACAACGATACGCTGGACGAGGATGACGATTCGCAGAACCTGGAGCTGCTGCCACCGAAGGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4611#0 CGAAAGTGACATCTACTCCAAGCTGAACGATTTCGATGTGGTGTTTGAAAATCCGGCCGA 60 consensus_4611#1 ------------------------------------------------------------ consensus_4611#0 ACGGCCCGACCCGATTCGAGCGGCCGTAGCAGCGGCGGCCGCTCCCGTGCCCGATTTCGA 120 consensus_4611#1 ------------------------------------------------------------ consensus_4611#0 CCCCCTTCTTCCGAGGCAGCAGCCGTCCAGTGGCGCCGGCGGACGCAAGGTTCTGACGAG 180 consensus_4611#1 ------------------------------------------------------------ consensus_4611#0 CGACAACAGTACCGATTCGTTCGCTTCCTCCACGGCCACGTCCAGCGGAGCGCCGGTGTC 240 consensus_4611#1 ------------------------------------------------------------ consensus_4611#0 TTCCGGCGCGAATGGAGACGAAGGTGGTGGGCAGCGCGATCACGGCGCTAGCACGGTGCC 300 consensus_4611#1 -----------------ACGAAGGTGGTGGGCAGCGCGATCACGGCGCTAGCACGGTGCC 43 ******************************************* consensus_4611#0 GTAGCTCAGCACGTGCAAGATATTGCAGCGCAAGCTGGAGCTGAAGGTGGAACGCGCCAA 360 consensus_4611#1 GCAGCTCAGCACGTGCAAGATATTGCAGCGCAAGCTGGAGCTGAAGGTGGAACGCGCCAA 103 * ********************************************************** consensus_4611#0 ACGCAACTACCGCCAGATGTACCACGATGGGGGACAGGTAGGTCGGCACGTGTTTGGCAT 420 consensus_4611#1 ACGCAACTACCGCCAGATGTACCACGATGGGGGACAG----------------------- 140 ************************************* consensus_4611#0 CGTGCAATGAAGGTTGAATTTACTATAAAAAAAACCCACCAAACCGATTCCATTCAGCAG 480 consensus_4611#1 ---------------------------------------------------------CAG 143 *** consensus_4611#0 GATCCAATCGAAAAGGAGCCGAAGATTAGCAGCCTCATACCGATCTCGCGCCTTCCGATA 540 consensus_4611#1 GATCCAATCGAAAAGGAGCCGAAGATTAGCAGCCTCATACCGATCTCGCGCCTTCCGATA 203 ************************************************************ consensus_4611#0 CCGGCCGGGCGGGAAAGCCACCAGCTGGTGGACGTCAACACCGGCTTCAACAGTGACGAC 600 consensus_4611#1 CCGGCCGGGCGGGAAAGCCACCAGCTGGTGGACGTCAACACCGGCTTCAACAGTGACGAC 263 ************************************************************ consensus_4611#0 GAGCTCGAGAATGTGTCCTTCTTTCCGCGCCCCAATCGGAAGGGCAGCGGCGGGGGCAGC 660 consensus_4611#1 GAGCTCGAGAATGTGTCCTTCTTTCCGCGCCCCAATCGGAAGGGCAGCGGCGGGGGCAGC 323 ************************************************************ consensus_4611#0 ACGCGCCAGGAGCTGTCCGACACGTTCAGCATCCAGGAGATGACGATCGAGTCGGACAAC 720 consensus_4611#1 ACGCGCCAGGAGCTGTCCGACACGTTCAGCATCCAGGAGATGACGATCGAGTCGGACAAC 383 ************************************************************ consensus_4611#0 GACGAGCTGGACTTTGAGCAGTGCCGCAAGATGTCGGACAGCAAGGGCTACCGGAAGATA 780 consensus_4611#1 GACGAGCTGGACTTTGAGCAGTGCCGCAAGATGTCGGACAGCAAGGGCTACCGGAAGATA 443 ************************************************************ consensus_4611#0 CTGAACCGCGGGTGCTCGGGCGCGGCCGGCAAGGACGACTATCTGGACAACGATACGCTG 840 consensus_4611#1 CTGAACCGCGGGTGCTCGGGCGCGGCCGGCAAGGACGACTATCTGGACAACGATACGCTG 503 ************************************************************ consensus_4611#0 GACGAGGATGACGATTCGCAGAACCTGGAGCTGCTGCCACCGAAGGGCGGCGGTTACGCG 900 consensus_4611#1 GACGAGGATGACGATTCGCAGAACCTGGAGCTGCTGCCACCGAAGGGC------------ 551 ************************************************ consensus_4611#0 CTGAAGGAGCAGCTGCGGCGACTGTTTTGCTGCTGCTTCGTAAAGAGTAACGATTTCCTG 960 consensus_4611#1 ------------------------------------------------------------ consensus_4611#0 TGATGTGATGGACAGCACTCGTTCGTTTA 989 consensus_4611#1 ----------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||