Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4635 cluster # 4635       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4635#0 length = 1022 sequences # 2  
consensus_4635#1 length = 674 sequences # 1  

consensusID : consensus_4635#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1022
fasta sequence
                              [GACCCACGCGTCCGGGCCCCAGCGGTCAGTACCAGAACGGGAAGGAGTGCATCATCTGTCGTGCCTACAACCTCGACGAGCATCTATTTACCGAAAGTGCAACGCTCGAGCTTCTGCAGATTCGCTGGCATCCGGCATCTCCGACGGATTCACACTTGCTCGCTCTCCTGTCGGACAATTCGATAAGGGTGTACGATGTGGACTCGCTGCGGCATGTATGGCGCATTGGACCGACACCAACACCGCAACCCGTCGTCATCGGTAGTGGCAGCGGCGTTGGAGGCGGCAGTAAACACGGTTCTTCGGCCAGTTTTGTCGGATCGCCGGGAACGGCTGTCGCCTCGCCGGGAGTCACTTCGAAGCTTGCCTATCTTAACAGTCTGGGCGATACGGCTGTTGATTTTGACATCGCACCGCCACGTGTGGTTTCTTCCGCCACCGGTGGAAGTGGCTCCGTCGGCGCCGATACAACGTTCTCACCGACGACGACCCTGTCAACGACGTCGTCAACGGTCACCGCAACGAAGCCGGCCATTGCTCCAAAGGAAGGCACCCTCATGAATGACTCGGTAATCGCGCAGAAGAATAAAAAGGCACCACCGACTGCCGGTGCCGGTGGGACCAAAGTGGAGTGGCCAATAGTGATTCTGCGGGGCGATGGCAATGTCTATGTACTTTGCGCCGGCATCGACACCAATCGACCCAAGCTGCAGGGACCGATTTCGATTCAGCCGCAGGTGGACGATAACTATGGGCTGGATTCGTGTTCGCTCATCGTCATCCCGACGCTGCCCCCGACAGTCATCATTGCCGAGAGCACGGGCAAAACGCATCATGCACTTTTCCTCGAGGAGTCCTGTTCCCTGGAGCGATCCCTCACGTCCGAGCAGCTGGCAGACAGCAATCTTACCCTGCACCCTTGCGAGTGGTACCTGCACGTGCTGGAAACGGTCGAGCTGGAGCTGGGGCTGCCGAGCGTGGAGGAAACGAAGGAGGCCAAGTCCTACTCCTGTCCGCTGCAT]

[+] EMBL BM647192             [GACCCACGCGTCCGGGCCCCAGCGGTCAGTACCAGAACGGGAAGGAGTGCATCATCTGTCGTGCCTACAACCTCGACGAGCATCTATTTACCGAAAGTGCAACGCTCGAGCTTCTGCAGATTCGCTGGCATCCGGCATCTCCGACGGATTCACACTTGCTCGCTCTCCTGTCGGACAATTCGATAAGGGTGTACGATGTGGACTCGCTGCGGCATGTATGGCGCATTGGACCGACACCAACACCGCAACCCGTCGTCATCGGTAGTGGCAGCGGCGTTGGAGGCGGCAGTAAACACGGTTCTTCGGCCAGTTTTGTCGGATCGCCGGGAACGGCTGTCGCCTCGCCGGGAGTCACTTCGAAGCTTGCCTATCTTAACAGTCTGGGCGATACGGCTGTTGATTTTGACATCGCACCGCCACGTGTGGTTTCTTCCGCCACCGGTGGAAGTGGCTCCGTCGGCGCCGATACAACGTTCTCACCGACGACGACCCTGTCAACGACGTCGTCAACGGTCACCGCAACGAAGCCGGCCATTGCTCCAAAGGAAGGCACCCTCATGAATGACTCGGTAATCGCGCAGAAGAATAAAAAGGCACCACCGACTGCCGGTGCCGGTGGGACCAAAGTGGAGTGGCCAATAGTGATTCTGCGGGGCGATGGCAATGTCTATGTACTTTGCGCCGGCATCGACACCAATCGAC                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BM637964             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ccgGCGCAGAAGAATAAAAAGGCACCACCGACTGCCGGTGCCGGTGGGACCAAAGTGGAGTGGCCAATAGTGATTCTGCGGGGCGATGGCAATGTCTATGTACTTTGCGCCGGCATCGACACCAATCGACCCAAGCTGCAGGGACCGATTTCGATTCAGCCGCAGGTGGACGATAACTATGGGCTGGATTCGTGTTCGCTCATCGTCATCCCGACGCTGCCCCCGACAGTCATCATTGCCGAGAGCACGGGCAAAACGCATCATGCACTTTTCCTCGAGGAGTCCTGTTCCCTGGAGCGATCCCTCACGTCCGAGCAGCTGGCAGACAGCAATCTTACCCTGCACCCTTGCGAGTGGTACCTGCACGTGCTGGAAACGGTCGAGCTGGAGCTGGGGCTGCCGAGCGTGGAGGAAACGAAGGAGGCCAAGTCCTACTCCTGTCCGCTGCAT]


>consensus_4635#0 GACCCACGCGTCCGGGCCCCAGCGGTCAGTACCAGAACGGGAAGGAGTGCATCATCTGTC GTGCCTACAACCTCGACGAGCATCTATTTACCGAAAGTGCAACGCTCGAGCTTCTGCAGA TTCGCTGGCATCCGGCATCTCCGACGGATTCACACTTGCTCGCTCTCCTGTCGGACAATT CGATAAGGGTGTACGATGTGGACTCGCTGCGGCATGTATGGCGCATTGGACCGACACCAA CACCGCAACCCGTCGTCATCGGTAGTGGCAGCGGCGTTGGAGGCGGCAGTAAACACGGTT CTTCGGCCAGTTTTGTCGGATCGCCGGGAACGGCTGTCGCCTCGCCGGGAGTCACTTCGA AGCTTGCCTATCTTAACAGTCTGGGCGATACGGCTGTTGATTTTGACATCGCACCGCCAC GTGTGGTTTCTTCCGCCACCGGTGGAAGTGGCTCCGTCGGCGCCGATACAACGTTCTCAC CGACGACGACCCTGTCAACGACGTCGTCAACGGTCACCGCAACGAAGCCGGCCATTGCTC CAAAGGAAGGCACCCTCATGAATGACTCGGTAATCGCGCAGAAGAATAAAAAGGCACCAC CGACTGCCGGTGCCGGTGGGACCAAAGTGGAGTGGCCAATAGTGATTCTGCGGGGCGATG GCAATGTCTATGTACTTTGCGCCGGCATCGACACCAATCGACCCAAGCTGCAGGGACCGA TTTCGATTCAGCCGCAGGTGGACGATAACTATGGGCTGGATTCGTGTTCGCTCATCGTCA TCCCGACGCTGCCCCCGACAGTCATCATTGCCGAGAGCACGGGCAAAACGCATCATGCAC TTTTCCTCGAGGAGTCCTGTTCCCTGGAGCGATCCCTCACGTCCGAGCAGCTGGCAGACA GCAATCTTACCCTGCACCCTTGCGAGTGGTACCTGCACGTGCTGGAAACGGTCGAGCTGG AGCTGGGGCTGCCGAGCGTGGAGGAAACGAAGGAGGCCAAGTCCTACTCCTGTCCGCTGC AT



consensusID : consensus_4635#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 674
fasta sequence
                              [CCGCGGACGCGTGGGCGAAGCTTGCCTATCTTAACAGTCTGGGCGATACGGCTGTTGATTTTGACATCGCACCGCCACGTGTGGTTTCTTCCGCCACCGGTGGAAGTGGCTCCGTCGGCGCCGATACAACGTTCTCACCGACGACGACCCTGTCAACGACGTCGTCAACGGTCACCGCAACGAAGCCGGCCATTGCTCCAAAGGAAGGCACCCTCATGAATGACTCGGTAATCGCGCAGAAGAATAAAAAGGCACCACCGACTGCCGGTGCCGGTGGGACCAAAGTGGAGTGGCCAATAGTGATTCTGCGGGGCGATGGCAATGTCTATGTACTTTGCGCCGGCATCGACACCAATCGACCCAAGCTGCAGGGACCGATTTCGATTCAGCCGCAGGTGGACGATAACTATGGGCTGGATTCGTGTTCGCTCATCGTCATCCCGACGCTGCCACCGACAGTCATCATTGCCGAGAGCACGGGCAAAACGCATCATGCACTTTTCCTCGAGGAGTCCTGTCCCCTGGAGCGATCCCTCACGTCCGAGCAGCTGGCAGACAGCAATCTTACCCTGCACCCGTGCGAGTGGTACCTGCACGTGCTGGAAACGGTCGAGCTGGAGCTGGGGCTGCCGAGCGTGGAGGAAACGAAGGAGGCCAAGTCCTACTCCTGTCCG]

[+] EMBL BM643924             [CCGCGGACGCGTGGGCGAAGCTTGCCTATCTTAACAGTCTGGGCGATACGGCTGTTGATTTTGACATCGCACCGCCACGTGTGGTTTCTTCCGCCACCGGTGGAAGTGGCTCCGTCGGCGCCGATACAACGTTCTCACCGACGACGACCCTGTCAACGACGTCGTCAACGGTCACCGCAACGAAGCCGGCCATTGCTCCAAAGGAAGGCACCCTCATGAATGACTCGGTAATCGCGCAGAAGAATAAAAAGGCACCACCGACTGCCGGTGCCGGTGGGACCAAAGTGGAGTGGCCAATAGTGATTCTGCGGGGCGATGGCAATGTCTATGTACTTTGCGCCGGCATCGACACCAATCGACCCAAGCTGCAGGGACCGATTTCGATTCAGCCGCAGGTGGACGATAACTATGGGCTGGATTCGTGTTCGCTCATCGTCATCCCGACGCTGCCACCGACAGTCATCATTGCCGAGAGCACGGGCAAAACGCATCATGCACTTTTCCTCGAGGAGTCCTGTCCCCTGGAGCGATCCCTCACGTCCGAGCAGCTGGCAGACAGCAATCTTACCCTGCACCCGTGCGAGTGGTACCTGCACGTGCTGGAAACGGTCGAGCTGGAGCTGGGGCTGCCGAGCGTGGAGGAAACGAAGGAGGCCAAGTCCTACTCCTGTCCG]


>consensus_4635#1 CCGCGGACGCGTGGGCGAAGCTTGCCTATCTTAACAGTCTGGGCGATACGGCTGTTGATT TTGACATCGCACCGCCACGTGTGGTTTCTTCCGCCACCGGTGGAAGTGGCTCCGTCGGCG CCGATACAACGTTCTCACCGACGACGACCCTGTCAACGACGTCGTCAACGGTCACCGCAA CGAAGCCGGCCATTGCTCCAAAGGAAGGCACCCTCATGAATGACTCGGTAATCGCGCAGA AGAATAAAAAGGCACCACCGACTGCCGGTGCCGGTGGGACCAAAGTGGAGTGGCCAATAG TGATTCTGCGGGGCGATGGCAATGTCTATGTACTTTGCGCCGGCATCGACACCAATCGAC CCAAGCTGCAGGGACCGATTTCGATTCAGCCGCAGGTGGACGATAACTATGGGCTGGATT CGTGTTCGCTCATCGTCATCCCGACGCTGCCACCGACAGTCATCATTGCCGAGAGCACGG GCAAAACGCATCATGCACTTTTCCTCGAGGAGTCCTGTCCCCTGGAGCGATCCCTCACGT CCGAGCAGCTGGCAGACAGCAATCTTACCCTGCACCCGTGCGAGTGGTACCTGCACGTGC TGGAAACGGTCGAGCTGGAGCTGGGGCTGCCGAGCGTGGAGGAAACGAAGGAGGCCAAGT CCTACTCCTGTCCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4635#0      GACCCACGCGTCCGGGCCCCAGCGGTCAGTACCAGAACGGGAAGGAGTGCATCATCTGTC 60
consensus_4635#1      ------------------------------------------------------------
                                                                                  

consensus_4635#0      GTGCCTACAACCTCGACGAGCATCTATTTACCGAAAGTGCAACGCTCGAGCTTCTGCAGA 120
consensus_4635#1      ------------------------------------------------------------
                                                                                  

consensus_4635#0      TTCGCTGGCATCCGGCATCTCCGACGGATTCACACTTGCTCGCTCTCCTGTCGGACAATT 180
consensus_4635#1      ------------------------------------------------------------
                                                                                  

consensus_4635#0      CGATAAGGGTGTACGATGTGGACTCGCTGCGGCATGTATGGCGCATTGGACCGACACCAA 240
consensus_4635#1      ------------------------------------------------------------
                                                                                  

consensus_4635#0      CACCGCAACCCGTCGTCATCGGTAGTGGCAGCGGCGTTGGAGGCGGCAGTAAACACGGTT 300
consensus_4635#1      ------------------------------------------------------------
                                                                                  

consensus_4635#0      CTTCGGCCAGTTTTGTCGGATCGCCGGGAACGGCTGTCGCCTCGCCGGGAGTCACTTCGA 360
consensus_4635#1      ------------------------------------------CCGCGGACGCGTGGGCGA 18
                                                                *  ***  *      ***

consensus_4635#0      AGCTTGCCTATCTTAACAGTCTGGGCGATACGGCTGTTGATTTTGACATCGCACCGCCAC 420
consensus_4635#1      AGCTTGCCTATCTTAACAGTCTGGGCGATACGGCTGTTGATTTTGACATCGCACCGCCAC 78
                      ************************************************************

consensus_4635#0      GTGTGGTTTCTTCCGCCACCGGTGGAAGTGGCTCCGTCGGCGCCGATACAACGTTCTCAC 480
consensus_4635#1      GTGTGGTTTCTTCCGCCACCGGTGGAAGTGGCTCCGTCGGCGCCGATACAACGTTCTCAC 138
                      ************************************************************

consensus_4635#0      CGACGACGACCCTGTCAACGACGTCGTCAACGGTCACCGCAACGAAGCCGGCCATTGCTC 540
consensus_4635#1      CGACGACGACCCTGTCAACGACGTCGTCAACGGTCACCGCAACGAAGCCGGCCATTGCTC 198
                      ************************************************************

consensus_4635#0      CAAAGGAAGGCACCCTCATGAATGACTCGGTAATCGCGCAGAAGAATAAAAAGGCACCAC 600
consensus_4635#1      CAAAGGAAGGCACCCTCATGAATGACTCGGTAATCGCGCAGAAGAATAAAAAGGCACCAC 258
                      ************************************************************

consensus_4635#0      CGACTGCCGGTGCCGGTGGGACCAAAGTGGAGTGGCCAATAGTGATTCTGCGGGGCGATG 660
consensus_4635#1      CGACTGCCGGTGCCGGTGGGACCAAAGTGGAGTGGCCAATAGTGATTCTGCGGGGCGATG 318
                      ************************************************************

consensus_4635#0      GCAATGTCTATGTACTTTGCGCCGGCATCGACACCAATCGACCCAAGCTGCAGGGACCGA 720
consensus_4635#1      GCAATGTCTATGTACTTTGCGCCGGCATCGACACCAATCGACCCAAGCTGCAGGGACCGA 378
                      ************************************************************

consensus_4635#0      TTTCGATTCAGCCGCAGGTGGACGATAACTATGGGCTGGATTCGTGTTCGCTCATCGTCA 780
consensus_4635#1      TTTCGATTCAGCCGCAGGTGGACGATAACTATGGGCTGGATTCGTGTTCGCTCATCGTCA 438
                      ************************************************************

consensus_4635#0      TCCCGACGCTGCCCCCGACAGTCATCATTGCCGAGAGCACGGGCAAAACGCATCATGCAC 840
consensus_4635#1      TCCCGACGCTGCCACCGACAGTCATCATTGCCGAGAGCACGGGCAAAACGCATCATGCAC 498
                      ************* **********************************************

consensus_4635#0      TTTTCCTCGAGGAGTCCTGTTCCCTGGAGCGATCCCTCACGTCCGAGCAGCTGGCAGACA 900
consensus_4635#1      TTTTCCTCGAGGAGTCCTGTCCCCTGGAGCGATCCCTCACGTCCGAGCAGCTGGCAGACA 558
                      ******************** ***************************************

consensus_4635#0      GCAATCTTACCCTGCACCCTTGCGAGTGGTACCTGCACGTGCTGGAAACGGTCGAGCTGG 960
consensus_4635#1      GCAATCTTACCCTGCACCCGTGCGAGTGGTACCTGCACGTGCTGGAAACGGTCGAGCTGG 618
                      ******************* ****************************************

consensus_4635#0      AGCTGGGGCTGCCGAGCGTGGAGGAAACGAAGGAGGCCAAGTCCTACTCCTGTCCGCTGC 1020
consensus_4635#1      AGCTGGGGCTGCCGAGCGTGGAGGAAACGAAGGAGGCCAAGTCCTACTCCTGTCCG---- 674
                      ********************************************************    

consensus_4635#0      AT 1022
consensus_4635#1      --
                        




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)