These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4635#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1022 fasta sequence [GACCCACGCGTCCGGGCCCCAGCGGTCAGTACCAGAACGGGAAGGAGTGCATCATCTGTCGTGCCTACAACCTCGACGAGCATCTATTTACCGAAAGTGCAACGCTCGAGCTTCTGCAGATTCGCTGGCATCCGGCATCTCCGACGGATTCACACTTGCTCGCTCTCCTGTCGGACAATTCGATAAGGGTGTACGATGTGGACTCGCTGCGGCATGTATGGCGCATTGGACCGACACCAACACCGCAACCCGTCGTCATCGGTAGTGGCAGCGGCGTTGGAGGCGGCAGTAAACACGGTTCTTCGGCCAGTTTTGTCGGATCGCCGGGAACGGCTGTCGCCTCGCCGGGAGTCACTTCGAAGCTTGCCTATCTTAACAGTCTGGGCGATACGGCTGTTGATTTTGACATCGCACCGCCACGTGTGGTTTCTTCCGCCACCGGTGGAAGTGGCTCCGTCGGCGCCGATACAACGTTCTCACCGACGACGACCCTGTCAACGACGTCGTCAACGGTCACCGCAACGAAGCCGGCCATTGCTCCAAAGGAAGGCACCCTCATGAATGACTCGGTAATCGCGCAGAAGAATAAAAAGGCACCACCGACTGCCGGTGCCGGTGGGACCAAAGTGGAGTGGCCAATAGTGATTCTGCGGGGCGATGGCAATGTCTATGTACTTTGCGCCGGCATCGACACCAATCGACCCAAGCTGCAGGGACCGATTTCGATTCAGCCGCAGGTGGACGATAACTATGGGCTGGATTCGTGTTCGCTCATCGTCATCCCGACGCTGCCCCCGACAGTCATCATTGCCGAGAGCACGGGCAAAACGCATCATGCACTTTTCCTCGAGGAGTCCTGTTCCCTGGAGCGATCCCTCACGTCCGAGCAGCTGGCAGACAGCAATCTTACCCTGCACCCTTGCGAGTGGTACCTGCACGTGCTGGAAACGGTCGAGCTGGAGCTGGGGCTGCCGAGCGTGGAGGAAACGAAGGAGGCCAAGTCCTACTCCTGTCCGCTGCAT] [+] EMBL BM647192 [GACCCACGCGTCCGGGCCCCAGCGGTCAGTACCAGAACGGGAAGGAGTGCATCATCTGTCGTGCCTACAACCTCGACGAGCATCTATTTACCGAAAGTGCAACGCTCGAGCTTCTGCAGATTCGCTGGCATCCGGCATCTCCGACGGATTCACACTTGCTCGCTCTCCTGTCGGACAATTCGATAAGGGTGTACGATGTGGACTCGCTGCGGCATGTATGGCGCATTGGACCGACACCAACACCGCAACCCGTCGTCATCGGTAGTGGCAGCGGCGTTGGAGGCGGCAGTAAACACGGTTCTTCGGCCAGTTTTGTCGGATCGCCGGGAACGGCTGTCGCCTCGCCGGGAGTCACTTCGAAGCTTGCCTATCTTAACAGTCTGGGCGATACGGCTGTTGATTTTGACATCGCACCGCCACGTGTGGTTTCTTCCGCCACCGGTGGAAGTGGCTCCGTCGGCGCCGATACAACGTTCTCACCGACGACGACCCTGTCAACGACGTCGTCAACGGTCACCGCAACGAAGCCGGCCATTGCTCCAAAGGAAGGCACCCTCATGAATGACTCGGTAATCGCGCAGAAGAATAAAAAGGCACCACCGACTGCCGGTGCCGGTGGGACCAAAGTGGAGTGGCCAATAGTGATTCTGCGGGGCGATGGCAATGTCTATGTACTTTGCGCCGGCATCGACACCAATCGAC ] [+] EMBL BM637964 [ ccgGCGCAGAAGAATAAAAAGGCACCACCGACTGCCGGTGCCGGTGGGACCAAAGTGGAGTGGCCAATAGTGATTCTGCGGGGCGATGGCAATGTCTATGTACTTTGCGCCGGCATCGACACCAATCGACCCAAGCTGCAGGGACCGATTTCGATTCAGCCGCAGGTGGACGATAACTATGGGCTGGATTCGTGTTCGCTCATCGTCATCCCGACGCTGCCCCCGACAGTCATCATTGCCGAGAGCACGGGCAAAACGCATCATGCACTTTTCCTCGAGGAGTCCTGTTCCCTGGAGCGATCCCTCACGTCCGAGCAGCTGGCAGACAGCAATCTTACCCTGCACCCTTGCGAGTGGTACCTGCACGTGCTGGAAACGGTCGAGCTGGAGCTGGGGCTGCCGAGCGTGGAGGAAACGAAGGAGGCCAAGTCCTACTCCTGTCCGCTGCAT] consensusID : consensus_4635#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence [CCGCGGACGCGTGGGCGAAGCTTGCCTATCTTAACAGTCTGGGCGATACGGCTGTTGATTTTGACATCGCACCGCCACGTGTGGTTTCTTCCGCCACCGGTGGAAGTGGCTCCGTCGGCGCCGATACAACGTTCTCACCGACGACGACCCTGTCAACGACGTCGTCAACGGTCACCGCAACGAAGCCGGCCATTGCTCCAAAGGAAGGCACCCTCATGAATGACTCGGTAATCGCGCAGAAGAATAAAAAGGCACCACCGACTGCCGGTGCCGGTGGGACCAAAGTGGAGTGGCCAATAGTGATTCTGCGGGGCGATGGCAATGTCTATGTACTTTGCGCCGGCATCGACACCAATCGACCCAAGCTGCAGGGACCGATTTCGATTCAGCCGCAGGTGGACGATAACTATGGGCTGGATTCGTGTTCGCTCATCGTCATCCCGACGCTGCCACCGACAGTCATCATTGCCGAGAGCACGGGCAAAACGCATCATGCACTTTTCCTCGAGGAGTCCTGTCCCCTGGAGCGATCCCTCACGTCCGAGCAGCTGGCAGACAGCAATCTTACCCTGCACCCGTGCGAGTGGTACCTGCACGTGCTGGAAACGGTCGAGCTGGAGCTGGGGCTGCCGAGCGTGGAGGAAACGAAGGAGGCCAAGTCCTACTCCTGTCCG] [+] EMBL BM643924 [CCGCGGACGCGTGGGCGAAGCTTGCCTATCTTAACAGTCTGGGCGATACGGCTGTTGATTTTGACATCGCACCGCCACGTGTGGTTTCTTCCGCCACCGGTGGAAGTGGCTCCGTCGGCGCCGATACAACGTTCTCACCGACGACGACCCTGTCAACGACGTCGTCAACGGTCACCGCAACGAAGCCGGCCATTGCTCCAAAGGAAGGCACCCTCATGAATGACTCGGTAATCGCGCAGAAGAATAAAAAGGCACCACCGACTGCCGGTGCCGGTGGGACCAAAGTGGAGTGGCCAATAGTGATTCTGCGGGGCGATGGCAATGTCTATGTACTTTGCGCCGGCATCGACACCAATCGACCCAAGCTGCAGGGACCGATTTCGATTCAGCCGCAGGTGGACGATAACTATGGGCTGGATTCGTGTTCGCTCATCGTCATCCCGACGCTGCCACCGACAGTCATCATTGCCGAGAGCACGGGCAAAACGCATCATGCACTTTTCCTCGAGGAGTCCTGTCCCCTGGAGCGATCCCTCACGTCCGAGCAGCTGGCAGACAGCAATCTTACCCTGCACCCGTGCGAGTGGTACCTGCACGTGCTGGAAACGGTCGAGCTGGAGCTGGGGCTGCCGAGCGTGGAGGAAACGAAGGAGGCCAAGTCCTACTCCTGTCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4635#0 GACCCACGCGTCCGGGCCCCAGCGGTCAGTACCAGAACGGGAAGGAGTGCATCATCTGTC 60 consensus_4635#1 ------------------------------------------------------------ consensus_4635#0 GTGCCTACAACCTCGACGAGCATCTATTTACCGAAAGTGCAACGCTCGAGCTTCTGCAGA 120 consensus_4635#1 ------------------------------------------------------------ consensus_4635#0 TTCGCTGGCATCCGGCATCTCCGACGGATTCACACTTGCTCGCTCTCCTGTCGGACAATT 180 consensus_4635#1 ------------------------------------------------------------ consensus_4635#0 CGATAAGGGTGTACGATGTGGACTCGCTGCGGCATGTATGGCGCATTGGACCGACACCAA 240 consensus_4635#1 ------------------------------------------------------------ consensus_4635#0 CACCGCAACCCGTCGTCATCGGTAGTGGCAGCGGCGTTGGAGGCGGCAGTAAACACGGTT 300 consensus_4635#1 ------------------------------------------------------------ consensus_4635#0 CTTCGGCCAGTTTTGTCGGATCGCCGGGAACGGCTGTCGCCTCGCCGGGAGTCACTTCGA 360 consensus_4635#1 ------------------------------------------CCGCGGACGCGTGGGCGA 18 * *** * *** consensus_4635#0 AGCTTGCCTATCTTAACAGTCTGGGCGATACGGCTGTTGATTTTGACATCGCACCGCCAC 420 consensus_4635#1 AGCTTGCCTATCTTAACAGTCTGGGCGATACGGCTGTTGATTTTGACATCGCACCGCCAC 78 ************************************************************ consensus_4635#0 GTGTGGTTTCTTCCGCCACCGGTGGAAGTGGCTCCGTCGGCGCCGATACAACGTTCTCAC 480 consensus_4635#1 GTGTGGTTTCTTCCGCCACCGGTGGAAGTGGCTCCGTCGGCGCCGATACAACGTTCTCAC 138 ************************************************************ consensus_4635#0 CGACGACGACCCTGTCAACGACGTCGTCAACGGTCACCGCAACGAAGCCGGCCATTGCTC 540 consensus_4635#1 CGACGACGACCCTGTCAACGACGTCGTCAACGGTCACCGCAACGAAGCCGGCCATTGCTC 198 ************************************************************ consensus_4635#0 CAAAGGAAGGCACCCTCATGAATGACTCGGTAATCGCGCAGAAGAATAAAAAGGCACCAC 600 consensus_4635#1 CAAAGGAAGGCACCCTCATGAATGACTCGGTAATCGCGCAGAAGAATAAAAAGGCACCAC 258 ************************************************************ consensus_4635#0 CGACTGCCGGTGCCGGTGGGACCAAAGTGGAGTGGCCAATAGTGATTCTGCGGGGCGATG 660 consensus_4635#1 CGACTGCCGGTGCCGGTGGGACCAAAGTGGAGTGGCCAATAGTGATTCTGCGGGGCGATG 318 ************************************************************ consensus_4635#0 GCAATGTCTATGTACTTTGCGCCGGCATCGACACCAATCGACCCAAGCTGCAGGGACCGA 720 consensus_4635#1 GCAATGTCTATGTACTTTGCGCCGGCATCGACACCAATCGACCCAAGCTGCAGGGACCGA 378 ************************************************************ consensus_4635#0 TTTCGATTCAGCCGCAGGTGGACGATAACTATGGGCTGGATTCGTGTTCGCTCATCGTCA 780 consensus_4635#1 TTTCGATTCAGCCGCAGGTGGACGATAACTATGGGCTGGATTCGTGTTCGCTCATCGTCA 438 ************************************************************ consensus_4635#0 TCCCGACGCTGCCCCCGACAGTCATCATTGCCGAGAGCACGGGCAAAACGCATCATGCAC 840 consensus_4635#1 TCCCGACGCTGCCACCGACAGTCATCATTGCCGAGAGCACGGGCAAAACGCATCATGCAC 498 ************* ********************************************** consensus_4635#0 TTTTCCTCGAGGAGTCCTGTTCCCTGGAGCGATCCCTCACGTCCGAGCAGCTGGCAGACA 900 consensus_4635#1 TTTTCCTCGAGGAGTCCTGTCCCCTGGAGCGATCCCTCACGTCCGAGCAGCTGGCAGACA 558 ******************** *************************************** consensus_4635#0 GCAATCTTACCCTGCACCCTTGCGAGTGGTACCTGCACGTGCTGGAAACGGTCGAGCTGG 960 consensus_4635#1 GCAATCTTACCCTGCACCCGTGCGAGTGGTACCTGCACGTGCTGGAAACGGTCGAGCTGG 618 ******************* **************************************** consensus_4635#0 AGCTGGGGCTGCCGAGCGTGGAGGAAACGAAGGAGGCCAAGTCCTACTCCTGTCCGCTGC 1020 consensus_4635#1 AGCTGGGGCTGCCGAGCGTGGAGGAAACGAAGGAGGCCAAGTCCTACTCCTGTCCG---- 674 ******************************************************** consensus_4635#0 AT 1022 consensus_4635#1 -- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||