These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4653#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1048 fasta sequence [CAAAAAGCGGCATCACCGGGGGCATATGAAAACAAATCTNAGCAGAACAACGGCGCGTAGAAACTTTTCAAACCACATCCTCTTAGTGTGACGATAAAGATCCGGGCAAAGGATTACTCGTCATCCCTCTCTCCCGATTCACCCGGTCCGGGACTTTCGTTGACGTTTTTCTATCTGCCCAACATGCAGGTGGTAACCATGAACATTGCTTTAGTAGATTTTCATTCTGTAGGGGCAGCAGCAAGCGACGTTCTCTCCACCGACAGCGTGCTGAATGAGCTGTTCTGCGGAGATAGAGGAGAGGAATGTCCCAATCCGAAGATAAAATACCAGCTGCAGGATCTTTCAATAGACATCAATCAACTGGCACGCATGCTANAGGAAAGGAATCTCGGCAGCCCTTTTCTTTGGGTGCAGAAAATTTGCGGTCTAGAGTACATTTCGACNGCGTACACATGCGTTCGAGGACTTGACGTCCGAAATGACAACCTAGAGACTGGCGATAAATTGCATGAAACCATCCCGGTCAATCATNCACTCCGTTAGAGCACGATGGGAGGCACGGTTAAAGCTCTACAAGCAAATCCACGATCTCGAGAGCAAAATGATAGATACATCTGTCAACGATGAACATGGACATCCGATACGCATCTCCAGCACAGTACTGCAGTGGAGTTCCATTTCATTTGAGGATTACGTTTCATCGGGCGTAGCTGGTATGTTCCTGGAGGATTCTATAGCCACTGCTAGTGACCTGTACTTCCGTGCTATAGTCATACGCGGCTCGGCTAAACTTGAAAGCTATATTTGTGTACCATGTCGGTATCCGGATGCATCACCGCTGTGGTCGTTCTCATTACACTGGAATGGCAAGCATACGTCGGTATCGAACAGCTCAGTGAGGGAAATGGAATACTGGTGCAACAGTTTGTCGGCACTGGAACACTCGTGTGACATTCTACCGAAACAATTAAAACGAGCAATGTCCTGCTTGGATATCTACCTGGAAACCGAAGGACCTTACTACGCGCCAGCAGAGTTTACACAG] [+] EMBL BX619511 [CAAAAAGCGGCATCACCGGGGGCATATGAAAACAAATCTNAGCAGAACAACGGCGCGTAGAAACTTTTCAAACCACATCCTCTTAGTGTGACGATAAAGATCCGGGCAAAGGATTACTCGTCATCCCTCTCTCCCGATTCACCCGGTCCGGGACTTTCGTTGACGTTTTTCTATCTGCCCAACATGCAGGTGGTAACCATGAACATTGCTTTAGTAGATTTTCATTCTGTAGGGGCAGCAGCAAGCGACGTTCTCTCCACCGACAGCGTGCTGAATGAGCTGTTCTGCGGAGATAGAGGAGAGGAATGTCCCAATCCGAAGATAAAATACCAGCTGCAGGATCTTTCAATAGACATCAATCAACTGGCACGCATGCTANAGGAAAGGAATCTCGGCAGCCCTTTTCTTTGGGTGCAGAAAATTTGCGGTCTAGAGTACATTTCGACNGCGTACACATGCGTTCGAGGACTTGACGTCCGAAATGACAACCTAGAGACTGGCGATAAATTGCATGAAACCATCCCGGTCAATCATN ] [+] EMBL BX621068 [ ACATCAATCAACTGGCACNCATGCTAAAGGAAAGGAATCTCGGCAGCCCTTTTCTTTGGGTGCAGAAAATTTGCGGTCTAGAGTACATTTCGACGGCGTACACATGCGTTCGAGGACTTGACGTCGGAAATGACAACCTAGAGACTGGCGATAAATTGCATGAAACCATCCC GTCAATCATCCACTCCGTTAGAGCACGATGGGAGGCACGGTTAAAGCTCTACAAGCAAATCCACGATCTCGAGAGCAAAATGATAGATACATCTGTCAACGATGAACATGGACATCCGATACGCATCTCCAGCACAGTACTGCAGTGGAGTTCCATTTCATTTGAGGATTACGTTTCATCGGGCGTAGCTGGTATGTTCCTGGAGGATTCTATAGCCACTGCTAGTGACCTGTACTTCCGTGCTATAGTCATACGCGGCTCGGCTAAACTTGAAAGCTATATTTGTGTACCATGTCGGTATCCGGATGCATCACCGCTGTGGTCGTTCTCATTACACTGGAATGGCAAGCATACGTCGGTATCGAACAGCTCAGTGAGGGAAATGGAATACTGGTGCAACAGTTTGTCGGCACTGGAACACTCGTGTGACATTCTACCGAAACAATTAAAACGAGCAATGTCCTGCTTGGATATCTACCTGGAAACCGAAGGACCTTACTACGCGCCAGCAGAGTTTACACAG] consensusID : consensus_4653#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 699 fasta sequence [CCGCCCACGCGTCCGCACGGTTAAAGCTCTACAAGCAGATCCACGATCTCGAGAGCAAAATGATAGATACATCTGTCAACGATGAACATGGACATCCGATACGCATCTCCAGCACAGTACTGCAGTGGAGTTCCATTTCATTTGAGGATTACGTTTCATCGGGCGTAGCTGGTATGTTCCTGGAGGATTCTATAGCCACTGCTAGTGACCTGTACTTCCGTGCTATAGTCATACGCGGCTCGGCTAAACTTGAAAGCTATATTTGTGTACCATGTCGGTATCCGGATGCATCACCGCTGTGGTCGTTCTCATTACACTGGAATGGCAAGCATACGTCGGTATCGAACAGCTCAGTGAGGGAAATGGAATACTGGTGCAACAGTTTGTCGGCACTGGAACACTCGTGTGACATTCTACCGAAACAATTAAAACGAGCAATGTCCTGCTTGGATATCTACCTGGAAACCGAAGGACCTTACTACGCGCCAGCAGAGTTTACACAGGACAAAAGCTTTCTCAAACCTTTCCGGGGTCGCACAAGAGCACAACCCTTTCGAATTGCACCAAACGGTAGCAGTTCCTTGTTTACTCAAATTTAATATGCATGTACAGATGGAAAGAACTTAAAACATGCTAACCATTTTTTTACTACATCTTTTTAAATATCTATGTGTGAACAGAATTGGAATAGAGCAGAAT] [+] EMBL BM638013 [CCGCCCACGCGTCCGCACGGTTAAAGCTCTACAAGCAGATCCACGATCTCGAGAGCAAAATGATAGATACATCTGTCAACGATGAACATGGACATCCGATACGCATCTCCAGCACAGTACTGCAGTGGAGTTCCATTTCATTTGAGGATTACGTTTCATCGGGCGTAGCTGGTATGTTCCTGGAGGATTCTATAGCCACTGCTAGTGACCTGTACTTCCGTGCTATAGTCATACGCGGCTCGGCTAAACTTGAAAGCTATATTTGTGTACCATGTCGGTATCCGGATGCATCACCGCTGTGGTCGTTCTCATTACACTGGAATGGCAAGCATACGTCGGTATCGAACAGCTCAGTGAGGGAAATGGAATACTGGTGCAACAGTTTGTCGGCACTGGAACACTCGTGTGACATTCTACCGAAACAATTAAAACGAGCAATGTCCTGCTTGGATATCTACCTGGAAACCGAAGGACCTTACTACGCGCCAGCAGAGTTTACACAGGACAAAAGCTTTCTCAAACCTTTCCGGGGTCGCACAAGAGCACAACCCTTTCGAATTGCACCAAACGGTAGCAGTTCCTTGTTTACTCAAATTTAATATGCATGTACAGATGGAAAGAACTTAAAACATGCTAACCATTTTTTTACTACATCTTTTTAAATATCTATGTGTGAACAGAATTGGAATAGAGCAGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4653#0 CAAAAAGCGGCATCACCGGGGGCATATGAAAACAAATCTNAGCAGAACAACGGCGCGTAG 60 consensus_4653#1 ------------------------------------------------------------ consensus_4653#0 AAACTTTTCAAACCACATCCTCTTAGTGTGACGATAAAGATCCGGGCAAAGGATTACTCG 120 consensus_4653#1 ------------------------------------------------------------ consensus_4653#0 TCATCCCTCTCTCCCGATTCACCCGGTCCGGGACTTTCGTTGACGTTTTTCTATCTGCCC 180 consensus_4653#1 ------------------------------------------------------------ consensus_4653#0 AACATGCAGGTGGTAACCATGAACATTGCTTTAGTAGATTTTCATTCTGTAGGGGCAGCA 240 consensus_4653#1 ------------------------------------------------------------ consensus_4653#0 GCAAGCGACGTTCTCTCCACCGACAGCGTGCTGAATGAGCTGTTCTGCGGAGATAGAGGA 300 consensus_4653#1 ------------------------------------------------------------ consensus_4653#0 GAGGAATGTCCCAATCCGAAGATAAAATACCAGCTGCAGGATCTTTCAATAGACATCAAT 360 consensus_4653#1 ------------------------------------------------------------ consensus_4653#0 CAACTGGCACGCATGCTANAGGAAAGGAATCTCGGCAGCCCTTTTCTTTGGGTGCAGAAA 420 consensus_4653#1 ------------------------------------------------------------ consensus_4653#0 ATTTGCGGTCTAGAGTACATTTCGACNGCGTACACATGCGTTCGAGGACTTGACGTCCGA 480 consensus_4653#1 ------------------------------------------------------------ consensus_4653#0 AATGACAACCTAGAGACTGGCGATAAATTGCATGAAACCATCCCGGTCAATCATNCACTC 540 consensus_4653#1 ------------------------------------------------------------ consensus_4653#0 CGTTAGAGCACGATGGGAGGCACGGTTAAAGCTCTACAAGCAAATCCACGATCTCGAGAG 600 consensus_4653#1 -----CCGCCCACGCGTCCGCACGGTTAAAGCTCTACAAGCAGATCCACGATCTCGAGAG 55 ** * * *********************** ***************** consensus_4653#0 CAAAATGATAGATACATCTGTCAACGATGAACATGGACATCCGATACGCATCTCCAGCAC 660 consensus_4653#1 CAAAATGATAGATACATCTGTCAACGATGAACATGGACATCCGATACGCATCTCCAGCAC 115 ************************************************************ consensus_4653#0 AGTACTGCAGTGGAGTTCCATTTCATTTGAGGATTACGTTTCATCGGGCGTAGCTGGTAT 720 consensus_4653#1 AGTACTGCAGTGGAGTTCCATTTCATTTGAGGATTACGTTTCATCGGGCGTAGCTGGTAT 175 ************************************************************ consensus_4653#0 GTTCCTGGAGGATTCTATAGCCACTGCTAGTGACCTGTACTTCCGTGCTATAGTCATACG 780 consensus_4653#1 GTTCCTGGAGGATTCTATAGCCACTGCTAGTGACCTGTACTTCCGTGCTATAGTCATACG 235 ************************************************************ consensus_4653#0 CGGCTCGGCTAAACTTGAAAGCTATATTTGTGTACCATGTCGGTATCCGGATGCATCACC 840 consensus_4653#1 CGGCTCGGCTAAACTTGAAAGCTATATTTGTGTACCATGTCGGTATCCGGATGCATCACC 295 ************************************************************ consensus_4653#0 GCTGTGGTCGTTCTCATTACACTGGAATGGCAAGCATACGTCGGTATCGAACAGCTCAGT 900 consensus_4653#1 GCTGTGGTCGTTCTCATTACACTGGAATGGCAAGCATACGTCGGTATCGAACAGCTCAGT 355 ************************************************************ consensus_4653#0 GAGGGAAATGGAATACTGGTGCAACAGTTTGTCGGCACTGGAACACTCGTGTGACATTCT 960 consensus_4653#1 GAGGGAAATGGAATACTGGTGCAACAGTTTGTCGGCACTGGAACACTCGTGTGACATTCT 415 ************************************************************ consensus_4653#0 ACCGAAACAATTAAAACGAGCAATGTCCTGCTTGGATATCTACCTGGAAACCGAAGGACC 1020 consensus_4653#1 ACCGAAACAATTAAAACGAGCAATGTCCTGCTTGGATATCTACCTGGAAACCGAAGGACC 475 ************************************************************ consensus_4653#0 TTACTACGCGCCAGCAGAGTTTACACAG-------------------------------- 1048 consensus_4653#1 TTACTACGCGCCAGCAGAGTTTACACAGGACAAAAGCTTTCTCAAACCTTTCCGGGGTCG 535 **************************** consensus_4653#0 ------------------------------------------------------------ consensus_4653#1 CACAAGAGCACAACCCTTTCGAATTGCACCAAACGGTAGCAGTTCCTTGTTTACTCAAAT 595 consensus_4653#0 ------------------------------------------------------------ consensus_4653#1 TTAATATGCATGTACAGATGGAAAGAACTTAAAACATGCTAACCATTTTTTTACTACATC 655 consensus_4653#0 -------------------------------------------- consensus_4653#1 TTTTTAAATATCTATGTGTGAACAGAATTGGAATAGAGCAGAAT 699 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||