These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4669#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 860 fasta sequence [CCGCCCACGCGTCCGCCACCCACTACCAGACGTACTGCGTCGAAATCAAACCGAAGCAGGGCTGGCTGGCGTACGAATTCTGGGAGGGGTGCCCCTTCCCCCGGAGCCGCTGTCCAACGGTGGTGGGGACCTTCGGAAGTGCCGTTACTGTTTGCATCAATATTTAAAGCTCCAAAAGAAATCGATAGCAAAGATTAGTAAATACTGTCCTCTGGATCTCTACTCCGGTAAACCCGTTCGTGTTCTGCAAGCCGTAAAGGGCCTTATCGGTGCGCCGCAGAACAACTTTAAAATACTGAAAAATGGCAAGGTCGTGTACGACGACAAGCGGGAAAAGTCCATGTTCAATCGGATACTGCGTGAAATGTTTCCGCGCGACGGTCGCACAAAGGATGAGAGAAGCACAATTTTCATGAATCTGATAAAGGAGATTTTGCTGAAAGATTTTACCACAAACGATGAGCATTGCGATCGGAAGCTGTTGAGCATCAAGAAGGATCGGAAGAAGAAGGATAAAAACCAGCTTCACGAACGAGCCTGCAACCCCGTCAATCAGCAGTTTCTTCCGCAAAGTTGCGCCCTCCGACAGATCCTAGACGTGCAGTTGTTAGTGAAGTCAAGCATTTCTACGATCGATCCATCGAAGCTGAACAAATCACGATCCCGATCCGTACAGCTATATTAGACGGAAAATTGTACGAACAAAGTATCTTCACCTANCCAGGGAGGACCGCACTTGTACGAATGGGCGCGNGCANCAAGTCGCACCAACTGGCCGAAACGGGTTCCCTTTCTTGTGCCCGAGTACCTGTCCGAGGAAGGAACCAGTATTCACCTCCGGTGCGAAACGGGCCCTGAAC] [+] EMBL BM617216 [CCGCCCACGCGTCCGCCACCCACTACCAGACGTACTGCGTCGAAATCAAACCGAAGCAGGGCTGGCTGGCGTACGAATTCTGGGAGGGGTGCCCCTTCCCCCGGAGCCGCTGTCCAACGGTGGTGGGGACCTTCGGAAGTGCCGTTACTGTTTGCATCAATATTTAAAGCTCCAAAAGAAATCGATAGCAAAGATTAGTAAATACTGTCCTCTGGATCTCTACTCCGGTAAACCCGTTCGTGTTCTGCAAGCCGTAAAGGGCCTTATCGGTGCGCCGCAGAACAACTTTAAAATACTGAAAAATGGCAAGGTCGTGTACGACGACAAGCGGGAAAAGTCCATGTTCAATCGGATACTGCGTGAAATGTTTCCGCGCGACGGTCGCACAAAGGATGAGAGAAGCACAATTTTCATGAATCTGATAAAGGAGATTTTGCTGAAAGATTTTACCACAAACGATGAGCATTGCGATCGGAAGCTGTTGAGCATCAAGAAGGATCGGAAGAAGAAGGATAAAAACCAGCTTCACGAACGAGCCTGCAACCCCGTCAATCAGCAGTTTCTTCCGCAAAG ] [+] EMBL AL932191 [ aatcGCCCCAGGATNAATCGATAGC AAGATTAGTAAATACTGTCCTCTGGATCTCTACTCCGGTAAACCCGTTCGTGTTCTGCAAGCCGTAAAGGGCCTTATCGGTGCGCCGCAGAACAACTTTAAAATACTGAAAAATGGCAAGGTCGTGTACGACGACAAGCGGGAAAAGTCCATGTTCAATCGGATACTGCGTGAAATGTTTCCGCGCGACGGTCGCACAAAGGATGAGAGAAGCACAATTTTCATGAATCTGATAAAGGAGATTTTGCTGAAAGATTTTACCACAAACGATGAGCATTGCGATCGGAAGCTGTTGAGCATCAAGAAGGATCGGAAGAAGAAGGATAAAAACCAGCTTCACGAACGAGCCTGCAACCCCGTCAATCAGCAGTTTCTTCCGCAAAGTTGCGCCCTCCGACAGATCCTAGACGTGCAGTTGTTAGTGAAGTCAAGCATTTCTACGATCGATCCATCGAAGCTGAACAAATCACGATCCCGATCCGTACAGCTATATTAGACGGAAAATTGTACGAACAAAGTATCTTCACCTANCCAGGGAGGACCGCACTTGTACGAATGGGCGCGNGCANCAAGTCGCACCAACTGGCCGAAACGGGTTCCCTTTCTTGTGCCCGAGTACCTGTCCGAGGAAGGAACCAGTATTCACCTCCGGTGCGAAACGGGCCCTGAAC] consensusID : consensus_4669#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 501 fasta sequence [AAACCAGCTTCACGAACGCGCCTGCAACCCGGTCAATCAGCAGTTTCTTCCCCAAAGTTGCGCCCTCCGACAGATCCTAGACGTGCAGTTGTTAGTGAAGTCAAGCATTTCTACGATCGATCCATCGAAGCTGAACAAATCGCGATCCGATCCGTACAGCTATATAGACGAAATCTACGAAAAGTATCTCACCTACCAGGAGGACGCACTGTACGATGGGCGCGGCAGCAGTCGCACCACCTGGCCGAACGGTTCCTTCTGTGCTGAGTACCTGTCCGAGGAGGAACAGTATCAGCTCGGTGCGACGGCCCTGGACTGCTCGATAATGATCACGTTCCGGCGGCTGTCCGGTGCCGAGGAGAGCAGCCTAACTGACACAGCACGGAATCACATCGTCTCGATCGAGGGTATGAAGTTTATCGTCAACGTTACGATCACCGATCTCGATCCAAAATCGCACAAACACTACGCCAAGTACGTGGGAACAGCTAGCGTCGTCTG] [+] EMBL BM618946 [AAACCAGCTTCACGAACGCGCCTGCAACCCGGTCAATCAGCAGTTTCTTCCCCAAAGTTGCGCCCTCCGACAGATCCTAGACGTGCAGTTGTTAGTGAAGTCAAGCATTTCTACGATCGATCCATCGAAGCTGAACAAATCGCGATCCGATCCGTACAGCTATATAGACGAAATCTACGAAAAGTATCTCACCTACCAGGAGGACGCACTGTACGATGGGCGCGGCAGCAGTCGCACCACCTGGCCGAACGGTTCCTTCTGTGCTGAGTACCTGTCCGAGGAGGAACAGTATCAGCTCGGTGCGACGGCCCTGGACTGCTCGATAATGATCACGTTCCGGCGGCTGTCCGGTGCCGAGGAGAGCAGCCTAACTGACACAGCACGGAATCACATCGTCTCGATCGAGGGTATGAAGTTTATCGTCAACGTTACGATCACCGATCTCGATCCAAAATCGCACAAACACTACGCCAAGTACGTGGGAACAGCTAGCGTCGTCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4669#0 CCGCCCACGCGTCCGCCACCCACTACCAGACGTACTGCGTCGAAATCAAACCGAAGCAGG 60 consensus_4669#1 ------------------------------------------------------------ consensus_4669#0 GCTGGCTGGCGTACGAATTCTGGGAGGGGTGCCCCTTCCCCCGGAGCCGCTGTCCAACGG 120 consensus_4669#1 ------------------------------------------------------------ consensus_4669#0 TGGTGGGGACCTTCGGAAGTGCCGTTACTGTTTGCATCAATATTTAAAGCTCCAAAAGAA 180 consensus_4669#1 ------------------------------------------------------------ consensus_4669#0 ATCGATAGCAAAGATTAGTAAATACTGTCCTCTGGATCTCTACTCCGGTAAACCCGTTCG 240 consensus_4669#1 ------------------------------------------------------------ consensus_4669#0 TGTTCTGCAAGCCGTAAAGGGCCTTATCGGTGCGCCGCAGAACAACTTTAAAATACTGAA 300 consensus_4669#1 ------------------------------------------------------------ consensus_4669#0 AAATGGCAAGGTCGTGTACGACGACAAGCGGGAAAAGTCCATGTTCAATCGGATACTGCG 360 consensus_4669#1 ------------------------------------------------------------ consensus_4669#0 TGAAATGTTTCCGCGCGACGGTCGCACAAAGGATGAGAGAAGCACAATTTTCATGAATCT 420 consensus_4669#1 ------------------------------------------------------------ consensus_4669#0 GATAAAGGAGATTTTGCTGAAAGATTTTACCACAAACGATGAGCATTGCGATCGGAAGCT 480 consensus_4669#1 ------------------------------------------------------------ consensus_4669#0 GTTGAGCATCAAGAAGGATCGGAAGAAGAAGGATAAAAACCAGCTTCACGAACGAGCCTG 540 consensus_4669#1 ------------------------------------AAACCAGCTTCACGAACGCGCCTG 24 ****************** ***** consensus_4669#0 CAACCCCGTCAATCAGCAGTTTCTTCCGCAAAGTTGCGCCCTCCGACAGATCCTAGACGT 600 consensus_4669#1 CAACCCGGTCAATCAGCAGTTTCTTCCCCAAAGTTGCGCCCTCCGACAGATCCTAGACGT 84 ****** ******************** ******************************** consensus_4669#0 GCAGTTGTTAGTGAAGTCAAGCATTTCTACGATCGATCCATCGAAGCTGAACAAATCACG 660 consensus_4669#1 GCAGTTGTTAGTGAAGTCAAGCATTTCTACGATCGATCCATCGAAGCTGAACAAATCGCG 144 ********************************************************* ** consensus_4669#0 ATCCCGATCCGTACAGCTATATTAGACGGAAAATTGTACGAACAAAGTATCTTCACCTAN 720 consensus_4669#1 ATCC-GATCCGTACAGCTATAT-AGACGAAA---TCTACGAA--AAGTATCT-CACCTAC 196 **** ***************** ***** ** * ****** ******** ****** consensus_4669#0 CCAGGGAGGACCGCACTTGTACGAATGGGCGCGNGCANCAAGTCGCACCAACTGGCCGAA 780 consensus_4669#1 C--AGGAGGAC-GCACT-GTACGA-TGGGCGCGG-CAGCA-GTCGCACCACCTGGCCGAA 249 * ******* ***** ****** ******** ** ** ********* ********* consensus_4669#0 ACGGGTTCCCTTTCTTGTGCCCGAGTACCTGTCCGAGGAAGGAACCAGTATTCACCTCCG 840 consensus_4669#1 --CGGTTCCTTC---TGTGCT-GAGTACCTGTCCGAGGAGGAA--CAGTATCAGCT--CG 299 ****** * ***** ***************** * * ****** * ** consensus_4669#0 GTGCGAAACGGGCCCTGAAC---------------------------------------- 860 consensus_4669#1 GTGCGA---CGGCCCTGGACTGCTCGATAATGATCACGTTCCGGCGGCTGTCCGGTGCCG 356 ****** ******* ** consensus_4669#0 ------------------------------------------------------------ consensus_4669#1 AGGAGAGCAGCCTAACTGACACAGCACGGAATCACATCGTCTCGATCGAGGGTATGAAGT 416 consensus_4669#0 ------------------------------------------------------------ consensus_4669#1 TTATCGTCAACGTTACGATCACCGATCTCGATCCAAAATCGCACAAACACTACGCCAAGT 476 consensus_4669#0 ------------------------- consensus_4669#1 ACGTGGGAACAGCTAGCGTCGTCTG 501 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||