cluster # 4680

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4680 cluster # 4680 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4680#0 length = 906 sequences # 2

consensus_4680#1 length = 551 sequences # 1

consensusID : consensus_4680#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 906
fasta sequence

                              [CCGCCCACGCGTCCGCAAGAACTTTGACGAGCTGGAGACGAGCACCAAGGAGAAGGGTGCGCTGCTGTTCGACGCCAAGCGCGAGGTGATTGTGCAGCAGAGCGTGGACGACATCGACTCGTGGATGGACGATCTCGAGAAGCAGATCATCAACACGGACACGGGCAACGATCTGACCTCGGTGAACATCCTGATGCAGAAGCAGCAGATCATCCAGACGCAGATGGCGGTGAAGGCGCGCCAGGTCGAGGAGCTCGACAAGCAGACGGAGGTGCTGACCAAGACGGCCCCGTCCGACGTCCTCGAGCCGATCGTCGAGAAGAAGACGGCGGTGAATGCGCGCTTCGAAAAGATCAAGGCACCGCTGCTGGAGCGCCAGCGCCAGCTGGAGAAGAAGAAGGAAGCGTTCCAGTTCCGGCGCGACGTCGAGGACGAGAAGCTGTGGATCGACGAGAAGATGCCGCTGGCCGAGTCGACAGAGTACGGCAACTCGCTGTTCAACGTGCACGTGCTGAAGAAGAAGCACCAGTCGCTCAACACCGAGATCGACAACCACGAGCCGCGCATCATGACGATCTGCAACAATGGGCAGAAGCTGATCGACGAGGGGCACGAGGATGCGGGCTCGTACGCGGATCTGATCAGCCAGCTTACGCAGAAGTGGCAGGAGCTGAAGGATGCGGTCGAGAACCGGCACCGCCAGCTCGACCAGTCCGAGAAGGTGCAGCAGTACTTCTTCGACGCGGCCGAGGCTGAGTCGTGGATGAGCGAGCAGGAGCTGTACATGATGGTGGAGGACCGCGGCAAGGACGAAACGTCCGCCCAGAATCTGATGAAGAAGCACGAGAGTCTGGAGCAGTCGGTGGAGGACTATGCCGACACGATCCGTCAGCTGGGTGAGACCGC]

[+] EMBL BM638520             [CCGCCCACGCGTCCGCAAGAACTTTGACGAGCTGGAGACGAGCACCAAGGAGAAGGGTGCGCTGCTGTTCGACGCCAAGCGCGAGGTGATTGTGCAGCAGAGCGTGGACGACATCGACTCGTGGATGGACGATCTCGAGAAGCAGATCATCAACACGGACACGGGCAACGATCTGACCTCGGTGAACATCCTGATGCAGAAGCAGCAGATCATCCAGACGCAGATGGCGGTGAAGGCGCGCCAGGTCGAGGAGCTCGACAAGCAGACGGAGGTGCTGACCAAGACGGCCCCGTCCGACGTCCTCGAGCCGATCGTCGAGAAGAAGACGGCGGTGAATGCGCGCTTCGAAAAGATCAAGGCACCGCTGCTGGAGCGCCAGCGCCAGCTGGAGAAGAAGAAGGAAGCGTTCCAGTTCCGGCGCGACGTCGAGGACGAGAAGCTGTGGATCGACGAGAAGATGCCGCTGGCCGAGTCGACAGAGTACGGCAACTCGCTGTTCAACGTGCACGTGCTGAAGAAGAAGCACCAGTCGCTCAACACCGAGATCGACA                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BM578450             [                                                                                                                                                                                                                                                         ccgGCTCGACAAGCAGACGGAGGTGCTGACCAAGACGGCCCCGTCCGACGTCCTCGAGCCGATCGTCGAGAAGAAGACGGCGGTGAATGCGCGCTTCGAAAAGATCAAGGCACCGCTGCTGGAGCGCCAGCGCCAGCTGGAGAAGAAGAAGGAAGCGTTCCAGTTCCGGCGCGACGTCGAGGACGAGAAGCTGTGGATCGACGAGAAGATGCCGCTGGCCGAGTCGACAGAGTACGGCAACTCGCTGTTCAACGTGCACGTGCTGAAGAAGAAGCACCAGTCGCTCAACACCGAGATCGACAACCACGAGCCGCGCATCATGACGATCTGCAACAATGGGCAGAAGCTGATCGACGAGGGGCACGAGGATGCGGGCTCGTACGCGGATCTGATCAGCCAGCTTACGCAGAAGTGGCAGGAGCTGAAGGATGCGGTCGAGAACCGGCACCGCCAGCTCGACCAGTCCGAGAAGGTGCAGCAGTACTTCTTCGACGCGGCCGAGGCTGAGTCGTGGATGAGCGAGCAGGAGCTGTACATGATGGTGGAGGACCGCGGCAAGGACGAAACGTCCGCCCAGAATCTGATGAAGAAGCACGAGAGTCTGGAGCAGTCGGTGGAGGACTATGCCGACACGATCCGTCAGCTGGGTGAGACCGC]




>consensus_4680#0
CCGCCCACGCGTCCGCAAGAACTTTGACGAGCTGGAGACGAGCACCAAGGAGAAGGGTGC
GCTGCTGTTCGACGCCAAGCGCGAGGTGATTGTGCAGCAGAGCGTGGACGACATCGACTC
GTGGATGGACGATCTCGAGAAGCAGATCATCAACACGGACACGGGCAACGATCTGACCTC
GGTGAACATCCTGATGCAGAAGCAGCAGATCATCCAGACGCAGATGGCGGTGAAGGCGCG
CCAGGTCGAGGAGCTCGACAAGCAGACGGAGGTGCTGACCAAGACGGCCCCGTCCGACGT
CCTCGAGCCGATCGTCGAGAAGAAGACGGCGGTGAATGCGCGCTTCGAAAAGATCAAGGC
ACCGCTGCTGGAGCGCCAGCGCCAGCTGGAGAAGAAGAAGGAAGCGTTCCAGTTCCGGCG
CGACGTCGAGGACGAGAAGCTGTGGATCGACGAGAAGATGCCGCTGGCCGAGTCGACAGA
GTACGGCAACTCGCTGTTCAACGTGCACGTGCTGAAGAAGAAGCACCAGTCGCTCAACAC
CGAGATCGACAACCACGAGCCGCGCATCATGACGATCTGCAACAATGGGCAGAAGCTGAT
CGACGAGGGGCACGAGGATGCGGGCTCGTACGCGGATCTGATCAGCCAGCTTACGCAGAA
GTGGCAGGAGCTGAAGGATGCGGTCGAGAACCGGCACCGCCAGCTCGACCAGTCCGAGAA
GGTGCAGCAGTACTTCTTCGACGCGGCCGAGGCTGAGTCGTGGATGAGCGAGCAGGAGCT
GTACATGATGGTGGAGGACCGCGGCAAGGACGAAACGTCCGCCCAGAATCTGATGAAGAA
GCACGAGAGTCTGGAGCAGTCGGTGGAGGACTATGCCGACACGATCCGTCAGCTGGGTGA
GACCGC

consensusID : consensus_4680#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 551
fasta sequence

                              [CCGCCCACGCGTCCGCAGATCATCCAGACGCAGATGGCAGTCAAGGCGCGCCAGGTCGAGGAGCTCGACAAGCAGACGGAGGTGCTGACCAAGACGGCCCCGTCCGACGTCCTCGAGCCGATCGTCGAGAAGAAGACGGCGGTGAATGCGCGCTTCGAAAAGATCAAGGCACCGCTGCTGGAGCGCCAGCGCCAGCTGGAGAAGAAGAAGGAAGCGTTCCAGTTCCGGCGCGACGTCGAGGACGAGAAGCTGTGGATCGACGAGAAGATGCCGCTGGCCGAGTCGACCGAGTACGGCAACTCGCTGTTCAACGTGCACGTGCTGAAGAAGAAGCACCAGTCGCTCAACACCGAGATCGACAACCACGAGCCGCGCATCATGACGATCTGCAACAATGGGCAGAAGCTGATCGACGAGGGGCACGAGGATGCGGGCTCGTACGCGGATCTGATCAGCCAGCTGACGCAGAAGTGGCAGGAGCTGAAGGATGCGGTCGAGAACCGGCACCGCCAGCTCGACCAGTCCGAGAAGGTGCAGCAGTACTTCTTCGA]

[+] EMBL BM586222             [CCGCCCACGCGTCCGCAGATCATCCAGACGCAGATGGCAGTCAAGGCGCGCCAGGTCGAGGAGCTCGACAAGCAGACGGAGGTGCTGACCAAGACGGCCCCGTCCGACGTCCTCGAGCCGATCGTCGAGAAGAAGACGGCGGTGAATGCGCGCTTCGAAAAGATCAAGGCACCGCTGCTGGAGCGCCAGCGCCAGCTGGAGAAGAAGAAGGAAGCGTTCCAGTTCCGGCGCGACGTCGAGGACGAGAAGCTGTGGATCGACGAGAAGATGCCGCTGGCCGAGTCGACCGAGTACGGCAACTCGCTGTTCAACGTGCACGTGCTGAAGAAGAAGCACCAGTCGCTCAACACCGAGATCGACAACCACGAGCCGCGCATCATGACGATCTGCAACAATGGGCAGAAGCTGATCGACGAGGGGCACGAGGATGCGGGCTCGTACGCGGATCTGATCAGCCAGCTGACGCAGAAGTGGCAGGAGCTGAAGGATGCGGTCGAGAACCGGCACCGCCAGCTCGACCAGTCCGAGAAGGTGCAGCAGTACTTCTTCGA]




>consensus_4680#1
CCGCCCACGCGTCCGCAGATCATCCAGACGCAGATGGCAGTCAAGGCGCGCCAGGTCGAG
GAGCTCGACAAGCAGACGGAGGTGCTGACCAAGACGGCCCCGTCCGACGTCCTCGAGCCG
ATCGTCGAGAAGAAGACGGCGGTGAATGCGCGCTTCGAAAAGATCAAGGCACCGCTGCTG
GAGCGCCAGCGCCAGCTGGAGAAGAAGAAGGAAGCGTTCCAGTTCCGGCGCGACGTCGAG
GACGAGAAGCTGTGGATCGACGAGAAGATGCCGCTGGCCGAGTCGACCGAGTACGGCAAC
TCGCTGTTCAACGTGCACGTGCTGAAGAAGAAGCACCAGTCGCTCAACACCGAGATCGAC
AACCACGAGCCGCGCATCATGACGATCTGCAACAATGGGCAGAAGCTGATCGACGAGGGG
CACGAGGATGCGGGCTCGTACGCGGATCTGATCAGCCAGCTGACGCAGAAGTGGCAGGAG
CTGAAGGATGCGGTCGAGAACCGGCACCGCCAGCTCGACCAGTCCGAGAAGGTGCAGCAG
TACTTCTTCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4680#0      CCGCCCACGCGTCCGCAAGAACTTTGACGAGCTGGAGACGAGCACCAAGGAGAAGGGTGC 60
consensus_4680#1      ------------------------------------------------------------
                                                                                  

consensus_4680#0      GCTGCTGTTCGACGCCAAGCGCGAGGTGATTGTGCAGCAGAGCGTGGACGACATCGACTC 120
consensus_4680#1      ------------------------------------------------------------
                                                                                  

consensus_4680#0      GTGGATGGACGATCTCGAGAAGCAGATCATCAACACGGACACGGGCAACGATCTGACCTC 180
consensus_4680#1      ------------------------------------------------------------
                                                                                  

consensus_4680#0      GGTGAACATCCTGATGCAGAAGCAGCAGATCATCCAGACGCAGATGGCGGTGAAGGCGCG 240
consensus_4680#1      ----------CCGCCCACGCGTCCGCAGATCATCCAGACGCAGATGGCAGTCAAGGCGCG 50
                                * *     *   * ************************ ** ********

consensus_4680#0      CCAGGTCGAGGAGCTCGACAAGCAGACGGAGGTGCTGACCAAGACGGCCCCGTCCGACGT 300
consensus_4680#1      CCAGGTCGAGGAGCTCGACAAGCAGACGGAGGTGCTGACCAAGACGGCCCCGTCCGACGT 110
                      ************************************************************

consensus_4680#0      CCTCGAGCCGATCGTCGAGAAGAAGACGGCGGTGAATGCGCGCTTCGAAAAGATCAAGGC 360
consensus_4680#1      CCTCGAGCCGATCGTCGAGAAGAAGACGGCGGTGAATGCGCGCTTCGAAAAGATCAAGGC 170
                      ************************************************************

consensus_4680#0      ACCGCTGCTGGAGCGCCAGCGCCAGCTGGAGAAGAAGAAGGAAGCGTTCCAGTTCCGGCG 420
consensus_4680#1      ACCGCTGCTGGAGCGCCAGCGCCAGCTGGAGAAGAAGAAGGAAGCGTTCCAGTTCCGGCG 230
                      ************************************************************

consensus_4680#0      CGACGTCGAGGACGAGAAGCTGTGGATCGACGAGAAGATGCCGCTGGCCGAGTCGACAGA 480
consensus_4680#1      CGACGTCGAGGACGAGAAGCTGTGGATCGACGAGAAGATGCCGCTGGCCGAGTCGACCGA 290
                      ********************************************************* **

consensus_4680#0      GTACGGCAACTCGCTGTTCAACGTGCACGTGCTGAAGAAGAAGCACCAGTCGCTCAACAC 540
consensus_4680#1      GTACGGCAACTCGCTGTTCAACGTGCACGTGCTGAAGAAGAAGCACCAGTCGCTCAACAC 350
                      ************************************************************

consensus_4680#0      CGAGATCGACAACCACGAGCCGCGCATCATGACGATCTGCAACAATGGGCAGAAGCTGAT 600
consensus_4680#1      CGAGATCGACAACCACGAGCCGCGCATCATGACGATCTGCAACAATGGGCAGAAGCTGAT 410
                      ************************************************************

consensus_4680#0      CGACGAGGGGCACGAGGATGCGGGCTCGTACGCGGATCTGATCAGCCAGCTTACGCAGAA 660
consensus_4680#1      CGACGAGGGGCACGAGGATGCGGGCTCGTACGCGGATCTGATCAGCCAGCTGACGCAGAA 470
                      *************************************************** ********

consensus_4680#0      GTGGCAGGAGCTGAAGGATGCGGTCGAGAACCGGCACCGCCAGCTCGACCAGTCCGAGAA 720
consensus_4680#1      GTGGCAGGAGCTGAAGGATGCGGTCGAGAACCGGCACCGCCAGCTCGACCAGTCCGAGAA 530
                      ************************************************************

consensus_4680#0      GGTGCAGCAGTACTTCTTCGACGCGGCCGAGGCTGAGTCGTGGATGAGCGAGCAGGAGCT 780
consensus_4680#1      GGTGCAGCAGTACTTCTTCGA--------------------------------------- 551
                      *********************                                       

consensus_4680#0      GTACATGATGGTGGAGGACCGCGGCAAGGACGAAACGTCCGCCCAGAATCTGATGAAGAA 840
consensus_4680#1      ------------------------------------------------------------
                                                                                  

consensus_4680#0      GCACGAGAGTCTGGAGCAGTCGGTGGAGGACTATGCCGACACGATCCGTCAGCTGGGTGA 900
consensus_4680#1      ------------------------------------------------------------
                                                                                  

consensus_4680#0      GACCGC 906
consensus_4680#1      ------