cluster # 4687

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Anopheles gambiae
cluster # 4687 cluster # 4687 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4687#0 length = 694 sequences # 1

consensus_4687#1 length = 684 sequences # 2

consensusID : consensus_4687#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 694
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGCAAAACAACAAGCCACAACGCATTCGTAGCAACAAATTTGTAAAGTGAATCAAGAAAATGGAAAAAATGGAACAAATTCAGCTAGAAAATGTAACCTTCAACGTGCCGGAAGTGTTGTCTTGCATTAGCAAATACCAGGAGCATGTGCGAGACATTGTAAATTCCAACTACGTAGACTTCCTGTCGATCAATCGCGATATGTTGGATGACCTGAAGTCGCTAGAGACGGATATAAAGGAACTCATCGCTTCGACCAGCCAACTAACGGTGGACAAGTCCAATGTAGCCTGGAACGATCTGCGAAACTACCAACGCGATCTCGAAGAGGGTATACGGGGCTACAAGATTGCCCGCAAGTTGCTTTCAATTCACGACCTGTTTGAGAGCTTGAATCTTTCTGGAAACGGATACGAGAAGACAGCCCACATCCTGACCAAGATCAAAACAATGCTGGATGAGCTGGACGATCCTGTGTTGGAAGAGCTACATTTCTTCCAGGGTCTGATTCTACGCCACGAAACGGAATACGATAAGCTCCTTAACGATCTGGATGTCACTTTCAACAAGCTGGTTCAGTTGCAGCAACGTTCTTTCCAAAATACCAAATCGGTGACGATACGCATTCATAAGGATGAAAACTTACTGTATCAGGTGGTAGTAACGCAGC]

[+] EMBL BM594855             [CCGCCCACGCGTCCGCCCACGCGTCCGCAAAACAACAAGCCACAACGCATTCGTAGCAACAAATTTGTAAAGTGAATCAAGAAAATGGAAAAAATGGAACAAATTCAGCTAGAAAATGTAACCTTCAACGTGCCGGAAGTGTTGTCTTGCATTAGCAAATACCAGGAGCATGTGCGAGACATTGTAAATTCCAACTACGTAGACTTCCTGTCGATCAATCGCGATATGTTGGATGACCTGAAGTCGCTAGAGACGGATATAAAGGAACTCATCGCTTCGACCAGCCAACTAACGGTGGACAAGTCCAATGTAGCCTGGAACGATCTGCGAAACTACCAACGCGATCTCGAAGAGGGTATACGGGGCTACAAGATTGCCCGCAAGTTGCTTTCAATTCACGACCTGTTTGAGAGCTTGAATCTTTCTGGAAACGGATACGAGAAGACAGCCCACATCCTGACCAAGATCAAAACAATGCTGGATGAGCTGGACGATCCTGTGTTGGAAGAGCTACATTTCTTCCAGGGTCTGATTCTACGCCACGAAACGGAATACGATAAGCTCCTTAACGATCTGGATGTCACTTTCAACAAGCTGGTTCAGTTGCAGCAACGTTCTTTCCAAAATACCAAATCGGTGACGATACGCATTCATAAGGATGAAAACTTACTGTATCAGGTGGTAGTAACGCAGC]




>consensus_4687#0
CCGCCCACGCGTCCGCCCACGCGTCCGCAAAACAACAAGCCACAACGCATTCGTAGCAAC
AAATTTGTAAAGTGAATCAAGAAAATGGAAAAAATGGAACAAATTCAGCTAGAAAATGTA
ACCTTCAACGTGCCGGAAGTGTTGTCTTGCATTAGCAAATACCAGGAGCATGTGCGAGAC
ATTGTAAATTCCAACTACGTAGACTTCCTGTCGATCAATCGCGATATGTTGGATGACCTG
AAGTCGCTAGAGACGGATATAAAGGAACTCATCGCTTCGACCAGCCAACTAACGGTGGAC
AAGTCCAATGTAGCCTGGAACGATCTGCGAAACTACCAACGCGATCTCGAAGAGGGTATA
CGGGGCTACAAGATTGCCCGCAAGTTGCTTTCAATTCACGACCTGTTTGAGAGCTTGAAT
CTTTCTGGAAACGGATACGAGAAGACAGCCCACATCCTGACCAAGATCAAAACAATGCTG
GATGAGCTGGACGATCCTGTGTTGGAAGAGCTACATTTCTTCCAGGGTCTGATTCTACGC
CACGAAACGGAATACGATAAGCTCCTTAACGATCTGGATGTCACTTTCAACAAGCTGGTT
CAGTTGCAGCAACGTTCTTTCCAAAATACCAAATCGGTGACGATACGCATTCATAAGGAT
GAAAACTTACTGTATCAGGTGGTAGTAACGCAGC

consensusID : consensus_4687#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 684
fasta sequence

                              [CCGCCCACGCGTCCGGCCACAACGCATTCGTAGCAACAAATTTGTAAAGTGGAAAATGGAAAAAATGGAACAAATTCAGCTAGAAAATGTAACCTTCAACGTGCCGGAAGTGTTGTCTTGCATTAGCAAATACCAGGAGCATGTGCGAGACATTGTAAATTCCAACTACGTATACTTCCTGTCGATCAATCGCGATATGTTGGATGACCTGAAGTCGCTAGAGACGGATATAAAGGAACTCATCGCTTCGACCAGCCAACTAACGGTGGACAAGTCCAATGTAGCCTGGAACGATCTGCGAAACTACCAACGCGATCTCGAAGAGGGTATACGGGGCTACAAGATTGCCCGCAAGTTGCTTTCAATTCACGACCTGTTTGAGAGCTTGAATCTTTCTGGAAACGGATACGAGAAGACAGCCCACATCCTGACCAAGATCAAAACAATGCTGGATGAGCTGGACGATCCTGTGTTGGAAGAGCTACATTTCTTCCAGGGTCTGATTCTACGCCATGAAACGGAATACGATAAGCTCCTTAACGATCTGGATGTCACTTTCAACAAGCTGGTTCAGTTGCAGCAACGTTCTTTCCAAAATACCAAATCGGTGACGATACGCATTCATAAGGATGAAAACTTACTGTATCAGGTGGTAGTAACGCAGCTGAAAACTGAACACAATTT]

[+] EMBL BM590581             [CCGCCCACGCGTCCGGCCACAACGCATTCGTAGCAACAAATTTGTAAAGTGGAAAATGGAAAAAATGGAACAAATTCAGCTAGAAAATGTAACCTTCAACGTGCCGGAAGTGTTGTCTTGCATTAGCAAATACCAGGAGCATGTGCGAGACATTGTAAATTCCAACTACGTATACTTCCTGTCGATCAATCGCGATATGTTGGATGACCTGAAGTCGCTAGAGACGGATATAAAGGAACTCATCGCTTCGACCAGCCAACTAACGGTGGACAAGTCCAATGTAGCCTGGAACGATCTGCGAAACTACCAACGCGATCTCGAAGAGGGTATACGGGGCTACAAGATTGCCCGCAAGTTGCTTTCAATTCACGACCTGTTTGAGAGCTTGAATCTTTCTGGAAACGGATACGAGAAGACAGCCCACATCCTGACCAAGATCAAAACAATGCTGGATGAGCTGGACGATCCTGTGTTGGAAGAGCTACATTTCTTCCAGGGTCTGATTCTACGCCATGAAACGGAATACGATAAGCTCCTTAACGATCTGGATGTCACTTTCAACAAGCTGGTTCAGTTGCAGCAACGTTCTTTCCAAAATACCAAATCGGTGACGATACGCATTCATAAGGATGAAAACTTACTGTATCAGGTGGTAGTAACGCAGCTGAAAACTGAACACAATTT]
[+] EMBL BM604247             [                                  ccgAAATTTGTAAAGTGGAAAATGGAAAAAATGGAACAAATTCAGCTAGAAAATGTAACCTTCAACGTGCCGGAAGTGTTGTCTTGCATTAGCAAATACCAGGAGCATGTGCGAGACATTGTAAATTCCAACTACGTAGACTTCCTGTCGATCAATCGCGATATGTTGGATGACCTGAAGTCGCTAGAGACGGATATAAAGGAACTCATCGCTTCGACCAGCCAACTAACGGTGGACAAGTCCAATGTAGCCTGGAACGATCTGCGAAACTACCAACGCGATCTCGAAGAGGGTATACGGGGCTACAAGATTGCCCGCAAGTTGCTTTCAATTCACGACCTGTTTGAGAGCTTGAATCTTTCTGGAAACGGATACGAGAAGACAGCCCACATCCTGACCAAGATCAAAACAATGCTGGATGAGCTGGACGATCCTGTGTTGGAAGAGCTACATTTCTTCCAGGGTCTGATTCTACGCCATGAAACGGAATACGATAAGCTCCTTAACGATCTGGATGTCACTTTCAACAAGCTGGTTCAGTTGCAGCAACGTTCTTTCCAAAATACCAAATCGGTGACGATACGCATTCATAAGGATGAAAACTTACTGTATCAGGTGGTAGTAACGCAGCTGAAAACTGA         ]




>consensus_4687#1
CCGCCCACGCGTCCGGCCACAACGCATTCGTAGCAACAAATTTGTAAAGTGGAAAATGGA
AAAAATGGAACAAATTCAGCTAGAAAATGTAACCTTCAACGTGCCGGAAGTGTTGTCTTG
CATTAGCAAATACCAGGAGCATGTGCGAGACATTGTAAATTCCAACTACGTATACTTCCT
GTCGATCAATCGCGATATGTTGGATGACCTGAAGTCGCTAGAGACGGATATAAAGGAACT
CATCGCTTCGACCAGCCAACTAACGGTGGACAAGTCCAATGTAGCCTGGAACGATCTGCG
AAACTACCAACGCGATCTCGAAGAGGGTATACGGGGCTACAAGATTGCCCGCAAGTTGCT
TTCAATTCACGACCTGTTTGAGAGCTTGAATCTTTCTGGAAACGGATACGAGAAGACAGC
CCACATCCTGACCAAGATCAAAACAATGCTGGATGAGCTGGACGATCCTGTGTTGGAAGA
GCTACATTTCTTCCAGGGTCTGATTCTACGCCATGAAACGGAATACGATAAGCTCCTTAA
CGATCTGGATGTCACTTTCAACAAGCTGGTTCAGTTGCAGCAACGTTCTTTCCAAAATAC
CAAATCGGTGACGATACGCATTCATAAGGATGAAAACTTACTGTATCAGGTGGTAGTAAC
GCAGCTGAAAACTGAACACAATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4687#0      CCGCCCACGCGTCCGCCCACGCGTCCGCAAAACAACAAGCCACAACGCATTCGTAGCAAC 60
consensus_4687#1      ------------CCGCCCACGCGTCCG-----------GCCACAACGCATTCGTAGCAAC 37
                                  ***************           **********************

consensus_4687#0      AAATTTGTAAAGTGAATCAAGAAAATGGAAAAAATGGAACAAATTCAGCTAGAAAATGTA 120
consensus_4687#1      AAATTTGTAAAGTG------GAAAATGGAAAAAATGGAACAAATTCAGCTAGAAAATGTA 91
                      **************      ****************************************

consensus_4687#0      ACCTTCAACGTGCCGGAAGTGTTGTCTTGCATTAGCAAATACCAGGAGCATGTGCGAGAC 180
consensus_4687#1      ACCTTCAACGTGCCGGAAGTGTTGTCTTGCATTAGCAAATACCAGGAGCATGTGCGAGAC 151
                      ************************************************************

consensus_4687#0      ATTGTAAATTCCAACTACGTAGACTTCCTGTCGATCAATCGCGATATGTTGGATGACCTG 240
consensus_4687#1      ATTGTAAATTCCAACTACGTATACTTCCTGTCGATCAATCGCGATATGTTGGATGACCTG 211
                      ********************* **************************************

consensus_4687#0      AAGTCGCTAGAGACGGATATAAAGGAACTCATCGCTTCGACCAGCCAACTAACGGTGGAC 300
consensus_4687#1      AAGTCGCTAGAGACGGATATAAAGGAACTCATCGCTTCGACCAGCCAACTAACGGTGGAC 271
                      ************************************************************

consensus_4687#0      AAGTCCAATGTAGCCTGGAACGATCTGCGAAACTACCAACGCGATCTCGAAGAGGGTATA 360
consensus_4687#1      AAGTCCAATGTAGCCTGGAACGATCTGCGAAACTACCAACGCGATCTCGAAGAGGGTATA 331
                      ************************************************************

consensus_4687#0      CGGGGCTACAAGATTGCCCGCAAGTTGCTTTCAATTCACGACCTGTTTGAGAGCTTGAAT 420
consensus_4687#1      CGGGGCTACAAGATTGCCCGCAAGTTGCTTTCAATTCACGACCTGTTTGAGAGCTTGAAT 391
                      ************************************************************

consensus_4687#0      CTTTCTGGAAACGGATACGAGAAGACAGCCCACATCCTGACCAAGATCAAAACAATGCTG 480
consensus_4687#1      CTTTCTGGAAACGGATACGAGAAGACAGCCCACATCCTGACCAAGATCAAAACAATGCTG 451
                      ************************************************************

consensus_4687#0      GATGAGCTGGACGATCCTGTGTTGGAAGAGCTACATTTCTTCCAGGGTCTGATTCTACGC 540
consensus_4687#1      GATGAGCTGGACGATCCTGTGTTGGAAGAGCTACATTTCTTCCAGGGTCTGATTCTACGC 511
                      ************************************************************

consensus_4687#0      CACGAAACGGAATACGATAAGCTCCTTAACGATCTGGATGTCACTTTCAACAAGCTGGTT 600
consensus_4687#1      CATGAAACGGAATACGATAAGCTCCTTAACGATCTGGATGTCACTTTCAACAAGCTGGTT 571
                      ** *********************************************************

consensus_4687#0      CAGTTGCAGCAACGTTCTTTCCAAAATACCAAATCGGTGACGATACGCATTCATAAGGAT 660
consensus_4687#1      CAGTTGCAGCAACGTTCTTTCCAAAATACCAAATCGGTGACGATACGCATTCATAAGGAT 631
                      ************************************************************

consensus_4687#0      GAAAACTTACTGTATCAGGTGGTAGTAACGCAGC------------------- 694
consensus_4687#1      GAAAACTTACTGTATCAGGTGGTAGTAACGCAGCTGAAAACTGAACACAATTT 684
                      **********************************