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Anopheles gambiae
cluster # 4699 cluster # 4699       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4699#0 length = 749 sequences # 2  
consensus_4699#1 length = 702 sequences # 1  

consensusID : consensus_4699#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 749
fasta sequence
                              [CCGCCCACGCGTCCGCCGCGAAGGTGTTTACGTTCATTATCATACCGTGCCACGGTCTGCATCTCGTGTACGAACAGCAGCAGAATTATCGATCGAATCCGGCCTGAGAAAGAAGCAAAAAAATCAACCCCAGTCAACTCATCTCCATTGCGGACAACTGCAGTGGAAGCTGCCGAAAGGATTGGTTTGCCACACGGTCTGCGACTGAGCAGCTATCGATCGGAATTTGCGCTACCATAGTGTGTGGTGGTGATCTTGAAAAACCTTCTACCCCTTGCTTGCTGGTCGTGTCCCGCACTGAGAAATCACCTTGTGGCATCCGGTGGAAGCGGTTGCAATAAAGTTTAAACAAAAAAGTAAGGTCGCGACAAGTGTGTGTGTGTGTGCGTTTGCAAT-----AGAGAAACCCGTGATCCTTGGACGAGTCGCGATGAATATGCATGAATTGTATGAAATTATAGAAAAGTGTCACGACAAGTCATCCCAGAAGGAACAGGATGAGACGCTGCTGCAACCATTTTCGTACATCCAGCAAATTCCCGGAAAGCAGGTCCGGTCGAAGCTAGCGCTAGCGAT-AACCATTGGCTACACATTCCGAACGACAAGCTGGCGGCGATAAGTGAGATTGTCCAAATGCTGCACAATTCCAGCTTGCTCATCGACGATATCGAAGACAATTCTATCCTTCGCAGAGGCATCCCGGTGGCGCACAAAATCTACGGCGTGGCGAGCACGATCAATGCGGCCAACTA]

[+] EMBL BM616004             [CCGCCCACGCGTCCGCCGCGAAGGTGTTTACGTTCATTATCATACCGTGCCACGGTCTGCATCTCGTGTACGAACAGCAGCAGAATTATCGATCGAATCCGGCCTGAGAAAGAAGCAAAAAAATCAACCCCAGTCAACTCATCTCCATTGCGGACAACTGCAGTGGAAGCTGCCGAAAGGATTGGTTTGCCACACGGTCTGCGACTGAGCAGCTATCGATCGGAATTTGCGCTACCATAGTGTGTGGTGGTGATCTTGAAAAACCTTCTACCCCTTGCTTGCTGGTCGTGTCCCGCACTGAGAAATCACCTTGTGGCATCCGGTGGAAGCGGTTGCAATAAAGTTTAAACAAAAAAGTAAGGTCGCGACAAGTGTGTGTGTGTGTGCGTTTGCAAT     AGAGAAACCCGTGATCCTTGGACGAGTCGCGATGAATATGCATGAATTGTATGAAATTATAGAAAAGTGTCACGACAAGTCATCCCAGAAGGAACAGGATGAGACGCTGCTGCAACCATTTTCGTACATCCAGCAAATTCCCGGAAAGCAGGTCCGGTCGAAGCTAGCGCTAGCGAT AACCATTGGCTACACATTCCGAACGACAAGCTGGCGGCGATAAGTGAGA                                                                                                                               ]
[+] EMBL BM590240             [                                                  ccgGGTCTGCATCTCGTGTACGAACAGCAGCAGAATTATCGATCGAATCCGGCCTGAGACAAAGGCAAAAAAAT AGCCCCAGTCAACTCATCTCCATTGCGGACAACTGCAGAGGAAGCTGCAGAAAGGATTGGTTTGCCACACGGTCTGCGACTGAGCAGCTATCGATCGGAATTTGCGCTA CATAGTGTGTGGTGGTGATCTTGAAAAAACTTCTACCCCTTGC       TCGTGTCCCGCATTGAGAAATCACCTTGTGGCATCCGGTGGAAGCGGTTGCAATAAAGTTTATACAAAAAAGTAAGGTCGCGACAAGTGTGTGTGTGTGTGCGTTTGCAATAGAAGAGAGAAACCCGTGATCCTTGGACGAGTCGCGATGAATATGCATGAATTGTATGAAATTATAGAAAAGTGTCACGACAAGTCATCCCAGAAGGAACAGGATGAGACGCTGCTGCAACCATTTTCGTACATCCAGCAAATTCCCGGAAAGCAGGTCCGGTCGAAGCTAGCGCTAGCGATAAACCATTGGCTACACATTCCGAACGACAAGCTGGCGGCGATAAGTGAGATTGTCCAAATGCTGCACAATTCCAGCTTGCTCATCGACGATATCGAAGACAATTCTATCCTTCGCAGAGGCATCCCGGTGGCGCACAAAATCTACGGCGTGGCGAGCACGATCAATGCGGCCAACTA]


>consensus_4699#0 CCGCCCACGCGTCCGCCGCGAAGGTGTTTACGTTCATTATCATACCGTGCCACGGTCTGC ATCTCGTGTACGAACAGCAGCAGAATTATCGATCGAATCCGGCCTGAGAAAGAAGCAAAA AAATCAACCCCAGTCAACTCATCTCCATTGCGGACAACTGCAGTGGAAGCTGCCGAAAGG ATTGGTTTGCCACACGGTCTGCGACTGAGCAGCTATCGATCGGAATTTGCGCTACCATAG TGTGTGGTGGTGATCTTGAAAAACCTTCTACCCCTTGCTTGCTGGTCGTGTCCCGCACTG AGAAATCACCTTGTGGCATCCGGTGGAAGCGGTTGCAATAAAGTTTAAACAAAAAAGTAA GGTCGCGACAAGTGTGTGTGTGTGTGCGTTTGCAATAGAGAAACCCGTGATCCTTGGACG AGTCGCGATGAATATGCATGAATTGTATGAAATTATAGAAAAGTGTCACGACAAGTCATC CCAGAAGGAACAGGATGAGACGCTGCTGCAACCATTTTCGTACATCCAGCAAATTCCCGG AAAGCAGGTCCGGTCGAAGCTAGCGCTAGCGATAACCATTGGCTACACATTCCGAACGAC AAGCTGGCGGCGATAAGTGAGATTGTCCAAATGCTGCACAATTCCAGCTTGCTCATCGAC GATATCGAAGACAATTCTATCCTTCGCAGAGGCATCCCGGTGGCGCACAAAATCTACGGC GTGGCGAGCACGATCAATGCGGCCAACTA



consensusID : consensus_4699#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 702
fasta sequence
                              [AGGCANGAATCGGCACGATGGAGAGAAACCGTGATCCTTGNCNCGAGTCGCGATGAATATGCATGAATTGTATGAAATTATAGAAAAGTGTCACGACAAGTCATCCCAGAAGGAACAGGATGAGACGCTGCTGCAACCATTTTCGTACATCCAGCAAATTCCCGGAAAGCAGGTCCGGTCGAAGCTAGCGCTCGCGATAAACCATTGGCTACACATTCCGAACGACAAGCTGGCGGCGATAAGTGAGATTGTCCAAATGCTGCACAATTCCAGCTTGCTCATCGACGATATCGAAGACAATTCTATCCTTCGCAGAGGCATCCCGGTGGCGCACAAAAGTCTACGGCGTGGCGAGCACGATCAATGCGGGCAACTATGTGCTATTCTCTCTAGCGCTGGAAAAGGTCCAGCAGCTCGGNCATCCGGATGCGACGCGGGTGTACACGGAGCAGCTGCTGGAGCTGCACCGTGGCCAGGGTATGGAGATCTACTGGCGCGACAACTACGCCTGNCCGACCGAGACGGAGTACAAGGCAGATGACGATACGGAAAACGGGCGGCCTGTTCATGCTGGCGATCCGGCTGATGCAGCTGTNNCTAGCGAGAAATCGCAACANGANTTTCAGCCAAGGCTGAACCGGCGGATCCCTAGGGGCTGTAACTTCCAGATACGGGACGACTTNACCNTGGCAACCCTGAGGC]

[+] EMBL BX467787             [AGGCANGAATCGGCACGATGGAGAGAAACCGTGATCCTTGNCNCGAGTCGCGATGAATATGCATGAATTGTATGAAATTATAGAAAAGTGTCACGACAAGTCATCCCAGAAGGAACAGGATGAGACGCTGCTGCAACCATTTTCGTACATCCAGCAAATTCCCGGAAAGCAGGTCCGGTCGAAGCTAGCGCTCGCGATAAACCATTGGCTACACATTCCGAACGACAAGCTGGCGGCGATAAGTGAGATTGTCCAAATGCTGCACAATTCCAGCTTGCTCATCGACGATATCGAAGACAATTCTATCCTTCGCAGAGGCATCCCGGTGGCGCACAAAAGTCTACGGCGTGGCGAGCACGATCAATGCGGGCAACTATGTGCTATTCTCTCTAGCGCTGGAAAAGGTCCAGCAGCTCGGNCATCCGGATGCGACGCGGGTGTACACGGAGCAGCTGCTGGAGCTGCACCGTGGCCAGGGTATGGAGATCTACTGGCGCGACAACTACGCCTGNCCGACCGAGACGGAGTACAAGGCAGATGACGATACGGAAAACGGGCGGCCTGTTCATGCTGGCGATCCGGCTGATGCAGCTGTNNCTAGCGAGAAATCGCAACANGANTTTCAGCCAAGGCTGAACCGGCGGATCCCTAGGGGCTGTAACTTCCAGATACGGGACGACTTNACCNTGGCAACCCTGAGGC]


>consensus_4699#1 AGGCANGAATCGGCACGATGGAGAGAAACCGTGATCCTTGNCNCGAGTCGCGATGAATAT GCATGAATTGTATGAAATTATAGAAAAGTGTCACGACAAGTCATCCCAGAAGGAACAGGA TGAGACGCTGCTGCAACCATTTTCGTACATCCAGCAAATTCCCGGAAAGCAGGTCCGGTC GAAGCTAGCGCTCGCGATAAACCATTGGCTACACATTCCGAACGACAAGCTGGCGGCGAT AAGTGAGATTGTCCAAATGCTGCACAATTCCAGCTTGCTCATCGACGATATCGAAGACAA TTCTATCCTTCGCAGAGGCATCCCGGTGGCGCACAAAAGTCTACGGCGTGGCGAGCACGA TCAATGCGGGCAACTATGTGCTATTCTCTCTAGCGCTGGAAAAGGTCCAGCAGCTCGGNC ATCCGGATGCGACGCGGGTGTACACGGAGCAGCTGCTGGAGCTGCACCGTGGCCAGGGTA TGGAGATCTACTGGCGCGACAACTACGCCTGNCCGACCGAGACGGAGTACAAGGCAGATG ACGATACGGAAAACGGGCGGCCTGTTCATGCTGGCGATCCGGCTGATGCAGCTGTNNCTA GCGAGAAATCGCAACANGANTTTCAGCCAAGGCTGAACCGGCGGATCCCTAGGGGCTGTA ACTTCCAGATACGGGACGACTTNACCNTGGCAACCCTGAGGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4699#0      CCGCCCACGCGTCCGCCGCGAAGGTGTTTACGTTCATTATCATACCGTGCCACGGTCTGC 60
consensus_4699#1      ------------------------------------------------------------
                                                                                  

consensus_4699#0      ATCTCGTGTACGAACAGCAGCAGAATTATCGATCGAATCCGGCCTGAGAAAGAAGCAAAA 120
consensus_4699#1      ------------------------------------------------------------
                                                                                  

consensus_4699#0      AAATCAACCCCAGTCAACTCATCTCCATTGCGGACAACTGCAGTGGAAGCTGCCGAAAGG 180
consensus_4699#1      ------------------------------------------------------------
                                                                                  

consensus_4699#0      ATTGGTTTGCCACACGGTCTGCGACTGAGCAGCTATCGATCGGAATTTGCGCTACCATAG 240
consensus_4699#1      ------------------------------------------------------------
                                                                                  

consensus_4699#0      TGTGTGGTGGTGATCTTGAAAAACCTTCTACCCCTTGCTTGCTGGTCGTGTCCCGCACTG 300
consensus_4699#1      ------------------------------------------------------------
                                                                                  

consensus_4699#0      AGAAATCACCTTGTGGCATCCGGTGGAAGCGGTTGCAATAAAGTTTAAACAAAAAAGTAA 360
consensus_4699#1      ------------------------------------------------------------
                                                                                  

consensus_4699#0      GGTCGCGACAAGTGTGTGTGTGTGTGCGTTTGCAATAGAGA-AACCCGTGATCCTTGG-A 418
consensus_4699#1      -----------------AGGCANGAATCGGCACGATGGAGAGAAACCGTGATCCTTGNCN 43
                                         *   *        * ** **** ** ************   

consensus_4699#0      CGAGTCGCGATGAATATGCATGAATTGTATGAAATTATAGAAAAGTGTCACGACAAGTCA 478
consensus_4699#1      CGAGTCGCGATGAATATGCATGAATTGTATGAAATTATAGAAAAGTGTCACGACAAGTCA 103
                      ************************************************************

consensus_4699#0      TCCCAGAAGGAACAGGATGAGACGCTGCTGCAACCATTTTCGTACATCCAGCAAATTCCC 538
consensus_4699#1      TCCCAGAAGGAACAGGATGAGACGCTGCTGCAACCATTTTCGTACATCCAGCAAATTCCC 163
                      ************************************************************

consensus_4699#0      GGAAAGCAGGTCCGGTCGAAGCTAGCGCTAGCGATAA-CCATTGGCTACACATTCCGAAC 597
consensus_4699#1      GGAAAGCAGGTCCGGTCGAAGCTAGCGCTCGCGATAAACCATTGGCTACACATTCCGAAC 223
                      ***************************** ******* **********************

consensus_4699#0      GACAAGCTGGCGGCGATAAGTGAGATTGTCCAAATGCTGCACAATTCCAGCTTGCTCATC 657
consensus_4699#1      GACAAGCTGGCGGCGATAAGTGAGATTGTCCAAATGCTGCACAATTCCAGCTTGCTCATC 283
                      ************************************************************

consensus_4699#0      GACGATATCGAAGACAATTCTATCCTTCGCAGAGGCATCCCGGTGGCGCACAAAA-TCTA 716
consensus_4699#1      GACGATATCGAAGACAATTCTATCCTTCGCAGAGGCATCCCGGTGGCGCACAAAAGTCTA 343
                      ******************************************************* ****

consensus_4699#0      CGGCGTGGCGAGCACGATCAATGCGGCCAACTA--------------------------- 749
consensus_4699#1      CGGCGTGGCGAGCACGATCAATGCGGGCAACTATGTGCTATTCTCTCTAGCGCTGGAAAA 403
                      ************************** ******                           

consensus_4699#0      ------------------------------------------------------------
consensus_4699#1      GGTCCAGCAGCTCGGNCATCCGGATGCGACGCGGGTGTACACGGAGCAGCTGCTGGAGCT 463
                                                                                  

consensus_4699#0      ------------------------------------------------------------
consensus_4699#1      GCACCGTGGCCAGGGTATGGAGATCTACTGGCGCGACAACTACGCCTGNCCGACCGAGAC 523
                                                                                  

consensus_4699#0      ------------------------------------------------------------
consensus_4699#1      GGAGTACAAGGCAGATGACGATACGGAAAACGGGCGGCCTGTTCATGCTGGCGATCCGGC 583
                                                                                  

consensus_4699#0      ------------------------------------------------------------
consensus_4699#1      TGATGCAGCTGTNNCTAGCGAGAAATCGCAACANGANTTTCAGCCAAGGCTGAACCGGCG 643
                                                                                  

consensus_4699#0      -----------------------------------------------------------
consensus_4699#1      GATCCCTAGGGGCTGTAACTTCCAGATACGGGACGACTTNACCNTGGCAACCCTGAGGC 702
                                                                                 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)