These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4699#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 749 fasta sequence [CCGCCCACGCGTCCGCCGCGAAGGTGTTTACGTTCATTATCATACCGTGCCACGGTCTGCATCTCGTGTACGAACAGCAGCAGAATTATCGATCGAATCCGGCCTGAGAAAGAAGCAAAAAAATCAACCCCAGTCAACTCATCTCCATTGCGGACAACTGCAGTGGAAGCTGCCGAAAGGATTGGTTTGCCACACGGTCTGCGACTGAGCAGCTATCGATCGGAATTTGCGCTACCATAGTGTGTGGTGGTGATCTTGAAAAACCTTCTACCCCTTGCTTGCTGGTCGTGTCCCGCACTGAGAAATCACCTTGTGGCATCCGGTGGAAGCGGTTGCAATAAAGTTTAAACAAAAAAGTAAGGTCGCGACAAGTGTGTGTGTGTGTGCGTTTGCAAT-----AGAGAAACCCGTGATCCTTGGACGAGTCGCGATGAATATGCATGAATTGTATGAAATTATAGAAAAGTGTCACGACAAGTCATCCCAGAAGGAACAGGATGAGACGCTGCTGCAACCATTTTCGTACATCCAGCAAATTCCCGGAAAGCAGGTCCGGTCGAAGCTAGCGCTAGCGAT-AACCATTGGCTACACATTCCGAACGACAAGCTGGCGGCGATAAGTGAGATTGTCCAAATGCTGCACAATTCCAGCTTGCTCATCGACGATATCGAAGACAATTCTATCCTTCGCAGAGGCATCCCGGTGGCGCACAAAATCTACGGCGTGGCGAGCACGATCAATGCGGCCAACTA] [+] EMBL BM616004 [CCGCCCACGCGTCCGCCGCGAAGGTGTTTACGTTCATTATCATACCGTGCCACGGTCTGCATCTCGTGTACGAACAGCAGCAGAATTATCGATCGAATCCGGCCTGAGAAAGAAGCAAAAAAATCAACCCCAGTCAACTCATCTCCATTGCGGACAACTGCAGTGGAAGCTGCCGAAAGGATTGGTTTGCCACACGGTCTGCGACTGAGCAGCTATCGATCGGAATTTGCGCTACCATAGTGTGTGGTGGTGATCTTGAAAAACCTTCTACCCCTTGCTTGCTGGTCGTGTCCCGCACTGAGAAATCACCTTGTGGCATCCGGTGGAAGCGGTTGCAATAAAGTTTAAACAAAAAAGTAAGGTCGCGACAAGTGTGTGTGTGTGTGCGTTTGCAAT AGAGAAACCCGTGATCCTTGGACGAGTCGCGATGAATATGCATGAATTGTATGAAATTATAGAAAAGTGTCACGACAAGTCATCCCAGAAGGAACAGGATGAGACGCTGCTGCAACCATTTTCGTACATCCAGCAAATTCCCGGAAAGCAGGTCCGGTCGAAGCTAGCGCTAGCGAT AACCATTGGCTACACATTCCGAACGACAAGCTGGCGGCGATAAGTGAGA ] [+] EMBL BM590240 [ ccgGGTCTGCATCTCGTGTACGAACAGCAGCAGAATTATCGATCGAATCCGGCCTGAGACAAAGGCAAAAAAAT AGCCCCAGTCAACTCATCTCCATTGCGGACAACTGCAGAGGAAGCTGCAGAAAGGATTGGTTTGCCACACGGTCTGCGACTGAGCAGCTATCGATCGGAATTTGCGCTA CATAGTGTGTGGTGGTGATCTTGAAAAAACTTCTACCCCTTGC TCGTGTCCCGCATTGAGAAATCACCTTGTGGCATCCGGTGGAAGCGGTTGCAATAAAGTTTATACAAAAAAGTAAGGTCGCGACAAGTGTGTGTGTGTGTGCGTTTGCAATAGAAGAGAGAAACCCGTGATCCTTGGACGAGTCGCGATGAATATGCATGAATTGTATGAAATTATAGAAAAGTGTCACGACAAGTCATCCCAGAAGGAACAGGATGAGACGCTGCTGCAACCATTTTCGTACATCCAGCAAATTCCCGGAAAGCAGGTCCGGTCGAAGCTAGCGCTAGCGATAAACCATTGGCTACACATTCCGAACGACAAGCTGGCGGCGATAAGTGAGATTGTCCAAATGCTGCACAATTCCAGCTTGCTCATCGACGATATCGAAGACAATTCTATCCTTCGCAGAGGCATCCCGGTGGCGCACAAAATCTACGGCGTGGCGAGCACGATCAATGCGGCCAACTA] consensusID : consensus_4699#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 702 fasta sequence [AGGCANGAATCGGCACGATGGAGAGAAACCGTGATCCTTGNCNCGAGTCGCGATGAATATGCATGAATTGTATGAAATTATAGAAAAGTGTCACGACAAGTCATCCCAGAAGGAACAGGATGAGACGCTGCTGCAACCATTTTCGTACATCCAGCAAATTCCCGGAAAGCAGGTCCGGTCGAAGCTAGCGCTCGCGATAAACCATTGGCTACACATTCCGAACGACAAGCTGGCGGCGATAAGTGAGATTGTCCAAATGCTGCACAATTCCAGCTTGCTCATCGACGATATCGAAGACAATTCTATCCTTCGCAGAGGCATCCCGGTGGCGCACAAAAGTCTACGGCGTGGCGAGCACGATCAATGCGGGCAACTATGTGCTATTCTCTCTAGCGCTGGAAAAGGTCCAGCAGCTCGGNCATCCGGATGCGACGCGGGTGTACACGGAGCAGCTGCTGGAGCTGCACCGTGGCCAGGGTATGGAGATCTACTGGCGCGACAACTACGCCTGNCCGACCGAGACGGAGTACAAGGCAGATGACGATACGGAAAACGGGCGGCCTGTTCATGCTGGCGATCCGGCTGATGCAGCTGTNNCTAGCGAGAAATCGCAACANGANTTTCAGCCAAGGCTGAACCGGCGGATCCCTAGGGGCTGTAACTTCCAGATACGGGACGACTTNACCNTGGCAACCCTGAGGC] [+] EMBL BX467787 [AGGCANGAATCGGCACGATGGAGAGAAACCGTGATCCTTGNCNCGAGTCGCGATGAATATGCATGAATTGTATGAAATTATAGAAAAGTGTCACGACAAGTCATCCCAGAAGGAACAGGATGAGACGCTGCTGCAACCATTTTCGTACATCCAGCAAATTCCCGGAAAGCAGGTCCGGTCGAAGCTAGCGCTCGCGATAAACCATTGGCTACACATTCCGAACGACAAGCTGGCGGCGATAAGTGAGATTGTCCAAATGCTGCACAATTCCAGCTTGCTCATCGACGATATCGAAGACAATTCTATCCTTCGCAGAGGCATCCCGGTGGCGCACAAAAGTCTACGGCGTGGCGAGCACGATCAATGCGGGCAACTATGTGCTATTCTCTCTAGCGCTGGAAAAGGTCCAGCAGCTCGGNCATCCGGATGCGACGCGGGTGTACACGGAGCAGCTGCTGGAGCTGCACCGTGGCCAGGGTATGGAGATCTACTGGCGCGACAACTACGCCTGNCCGACCGAGACGGAGTACAAGGCAGATGACGATACGGAAAACGGGCGGCCTGTTCATGCTGGCGATCCGGCTGATGCAGCTGTNNCTAGCGAGAAATCGCAACANGANTTTCAGCCAAGGCTGAACCGGCGGATCCCTAGGGGCTGTAACTTCCAGATACGGGACGACTTNACCNTGGCAACCCTGAGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4699#0 CCGCCCACGCGTCCGCCGCGAAGGTGTTTACGTTCATTATCATACCGTGCCACGGTCTGC 60 consensus_4699#1 ------------------------------------------------------------ consensus_4699#0 ATCTCGTGTACGAACAGCAGCAGAATTATCGATCGAATCCGGCCTGAGAAAGAAGCAAAA 120 consensus_4699#1 ------------------------------------------------------------ consensus_4699#0 AAATCAACCCCAGTCAACTCATCTCCATTGCGGACAACTGCAGTGGAAGCTGCCGAAAGG 180 consensus_4699#1 ------------------------------------------------------------ consensus_4699#0 ATTGGTTTGCCACACGGTCTGCGACTGAGCAGCTATCGATCGGAATTTGCGCTACCATAG 240 consensus_4699#1 ------------------------------------------------------------ consensus_4699#0 TGTGTGGTGGTGATCTTGAAAAACCTTCTACCCCTTGCTTGCTGGTCGTGTCCCGCACTG 300 consensus_4699#1 ------------------------------------------------------------ consensus_4699#0 AGAAATCACCTTGTGGCATCCGGTGGAAGCGGTTGCAATAAAGTTTAAACAAAAAAGTAA 360 consensus_4699#1 ------------------------------------------------------------ consensus_4699#0 GGTCGCGACAAGTGTGTGTGTGTGTGCGTTTGCAATAGAGA-AACCCGTGATCCTTGG-A 418 consensus_4699#1 -----------------AGGCANGAATCGGCACGATGGAGAGAAACCGTGATCCTTGNCN 43 * * * ** **** ** ************ consensus_4699#0 CGAGTCGCGATGAATATGCATGAATTGTATGAAATTATAGAAAAGTGTCACGACAAGTCA 478 consensus_4699#1 CGAGTCGCGATGAATATGCATGAATTGTATGAAATTATAGAAAAGTGTCACGACAAGTCA 103 ************************************************************ consensus_4699#0 TCCCAGAAGGAACAGGATGAGACGCTGCTGCAACCATTTTCGTACATCCAGCAAATTCCC 538 consensus_4699#1 TCCCAGAAGGAACAGGATGAGACGCTGCTGCAACCATTTTCGTACATCCAGCAAATTCCC 163 ************************************************************ consensus_4699#0 GGAAAGCAGGTCCGGTCGAAGCTAGCGCTAGCGATAA-CCATTGGCTACACATTCCGAAC 597 consensus_4699#1 GGAAAGCAGGTCCGGTCGAAGCTAGCGCTCGCGATAAACCATTGGCTACACATTCCGAAC 223 ***************************** ******* ********************** consensus_4699#0 GACAAGCTGGCGGCGATAAGTGAGATTGTCCAAATGCTGCACAATTCCAGCTTGCTCATC 657 consensus_4699#1 GACAAGCTGGCGGCGATAAGTGAGATTGTCCAAATGCTGCACAATTCCAGCTTGCTCATC 283 ************************************************************ consensus_4699#0 GACGATATCGAAGACAATTCTATCCTTCGCAGAGGCATCCCGGTGGCGCACAAAA-TCTA 716 consensus_4699#1 GACGATATCGAAGACAATTCTATCCTTCGCAGAGGCATCCCGGTGGCGCACAAAAGTCTA 343 ******************************************************* **** consensus_4699#0 CGGCGTGGCGAGCACGATCAATGCGGCCAACTA--------------------------- 749 consensus_4699#1 CGGCGTGGCGAGCACGATCAATGCGGGCAACTATGTGCTATTCTCTCTAGCGCTGGAAAA 403 ************************** ****** consensus_4699#0 ------------------------------------------------------------ consensus_4699#1 GGTCCAGCAGCTCGGNCATCCGGATGCGACGCGGGTGTACACGGAGCAGCTGCTGGAGCT 463 consensus_4699#0 ------------------------------------------------------------ consensus_4699#1 GCACCGTGGCCAGGGTATGGAGATCTACTGGCGCGACAACTACGCCTGNCCGACCGAGAC 523 consensus_4699#0 ------------------------------------------------------------ consensus_4699#1 GGAGTACAAGGCAGATGACGATACGGAAAACGGGCGGCCTGTTCATGCTGGCGATCCGGC 583 consensus_4699#0 ------------------------------------------------------------ consensus_4699#1 TGATGCAGCTGTNNCTAGCGAGAAATCGCAACANGANTTTCAGCCAAGGCTGAACCGGCG 643 consensus_4699#0 ----------------------------------------------------------- consensus_4699#1 GATCCCTAGGGGCTGTAACTTCCAGATACGGGACGACTTNACCNTGGCAACCCTGAGGC 702 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||