These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4700#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence [CGAGGATGTGTCATAGGTACGTTCGGGTTCGCACAGTACATGGGCCCAATGATGGGTTTGATGAACGCCTGGTCACACGTTCCGCACGAGTTTCTACCCTTCACCGACCACATGTCTCTCTATGAACGGGCTTATAACTCCTTCGTCAGTTCGTACGAGCTACTGCTTCGCTCCTGGTACTATCTTCCCGAGCAGCAAGCAATGGCGGACAAGCATTTCTCATTTCTGCCCGGTCCCCTACCCCGGCTGAGCGATCTTGAACGTCAAGTGTCGGTCATTCTGCTCAACAGCTATCCACCCCTTACGTCGACCCGTGCCAAAGTGCCCGGCTTGGTGCAGGTCGGTGGTTTACACATCAAACCGCCCAAACGTCTTCCGGACGATCTGCAAACGTTCATCGACGGTGCAACGGATGGGGTGATCTATTTCAGTCTCGGCACAAAC] [+] EMBL AL931836 [CGAGGATGTGTCATAGGTACGTTCGGGTTCGCACAGTACATGGGCCCAATGATGGGTTTGATGAACGCCTGGTCACACGTTCCGCACGAGTTTCTACCCTTCACCGACCACATGTCTCTCTATGAACGGGCTTATAACTCCTTCGTCAGTTCGTACGAGCTACTGCTTCGCTCCTGGTACTATCTTCCCGAGCAGCAAGCAATGGCGGACAAGCATTTCTCATTTCTGCCCGGTCCCCTACCCCGGCTGAGCGATCTTGAACGTCAAGTGTCGGTCATTCTGCTCAACAGCTATCCACCCCTTACGTCGACCCGTGCCAAAGTGCCCGGCTTGGTGCAGGTCGGTGGTTTACACATCAAACCGCCCAAACGTCTTCCGGACGATCTGCAAACGTTCATCGACGGTGCAACGGATGGGGTGATCTATTTCAGTCTCGGCACAAAC] consensusID : consensus_4700#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 345 fasta sequence [GAATCGNCACGAGGTGTATCTCTATGAACGGGCTTATAACTCCTTCGTCAGTTCGTACGAGCTACTGCTTCGCTCCTGGTACTATCTTCCCGAGCAGCAAGCAATGGCGGACAAGCATTTCTCATTTCTGCCCGGTCCCCTACCCCGGCTGAGCGATCTTGAACGTCAAGTGTCGGTCATTCTGCTCAACAGCTATCCACCCCTTACGTCGACCCGTGCCAAAGTGCCCGGCTTGGTGCAGGTCAGGTGGTTTACACATCAAACCGCCAAACAGTCTTCCGGACGAGTCTGNAAACGTTCATCGAACAGGTGCAACGGATGAGGGTGATCTAATTTCAGTCTCGA] [+] EMBL BX469449 [GAATCGNCACGAGGTGTATCTCTATGAACGGGCTTATAACTCCTTCGTCAGTTCGTACGAGCTACTGCTTCGCTCCTGGTACTATCTTCCCGAGCAGCAAGCAATGGCGGACAAGCATTTCTCATTTCTGCCCGGTCCCCTACCCCGGCTGAGCGATCTTGAACGTCAAGTGTCGGTCATTCTGCTCAACAGCTATCCACCCCTTACGTCGACCCGTGCCAAAGTGCCCGGCTTGGTGCAGGTCAGGTGGTTTACACATCAAACCGCCAAACAGTCTTCCGGACGAGTCTGNAAACGTTCATCGAACAGGTGCAACGGATGAGGGTGATCTAATTTCAGTCTCGA] consensusID : consensus_4700#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence [TACGTACGGGTACGCACAGTACATGGGCCCAATGATGGGTAAGATGAACGCCTGGTCACACGTCCCGCACGAGTAGCAACCCTACACCGACCACATGTCGCTCTAAGAACGGGCTGACAACTCCCTCGTCAGTACGTACGAGCTACGGCTCCGCTCCTGGTACTAACCACCCGAGCAGCAAGCGATGGCGGACAAGCATAACACACAACCGCCCGGTCCACTGCCCCGGCTGAGCGATCCCGAACGTCAAGGGTCGGTCAGACCGCTCAACAG] [+] EMBL BX612467 [TACGTACGGGTACGCACAGTACATGGGCCCAATGATGGGTAAGATGAACGCCTGGTCACACGTCCCGCACGAGTAGCAACCCTACACCGACCACATGTCGCTCTAAGAACGGGCTGACAACTCCCTCGTCAGTACGTACGAGCTACGGCTCCGCTCCTGGTACTAACCACCCGAGCAGCAAGCGATGGCGGACAAGCATAACACACAACCGCCCGGTCCACTGCCCCGGCTGAGCGATCCCGAACGTCAAGGGTCGGTCAGACCGCTCAACAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4700#0 CGAGGATGTGTCATAGGTACGTTCGGGTTCGCACAGTACATGGGCCCAATGATGGGTTTG 60 consensus_4700#1 ------------------------------------------------------------ consensus_4700#2 -----------------TACGTACGGGTACGCACAGTACATGGGCCCAATGATGGGTAAG 43 consensus_4700#0 ATGAACGCCTGGTCACACGTTCCGCACGAGTTTCTACCCTTCACCGACCACATGTCTCTC 120 consensus_4700#1 -------------------------------------GAATCGNC-ACGAGGTGTATCTC 22 consensus_4700#2 ATGAACGCCTGGTCACACGTCCCGCACGAGTAGCAACCCTACACCGACCACATGTCGCTC 103 * * ** * *** *** consensus_4700#0 TATGAACGGGCTTATAACTCCTTCGTCAGTTCGTACGAGCTACTGCTTCGCTCCTGGTAC 180 consensus_4700#1 TATGAACGGGCTTATAACTCCTTCGTCAGTTCGTACGAGCTACTGCTTCGCTCCTGGTAC 82 consensus_4700#2 TAAGAACGGGCTGACAACTCCCTCGTCAGTACGTACGAGCTACGGCTCCGCTCCTGGTAC 163 ** ********* * ****** ******** ************ *** ************ consensus_4700#0 TATCTTCCCGAGCAGCAAGCAATGGCGGACAAGCATTTCTCATTTCTGCCCGGTCCCCTA 240 consensus_4700#1 TATCTTCCCGAGCAGCAAGCAATGGCGGACAAGCATTTCTCATTTCTGCCCGGTCCCCTA 142 consensus_4700#2 TAACCACCCGAGCAGCAAGCGATGGCGGACAAGCATAACACACAACCGCCCGGTCCACTG 223 ** * ************** *************** * ** * ********* ** consensus_4700#0 CCCCGGCTGAGCGATCTTGAACGTCAAGTGTCGGTCATTCTGCTCAACAGCTATCCACCC 300 consensus_4700#1 CCCCGGCTGAGCGATCTTGAACGTCAAGTGTCGGTCATTCTGCTCAACAGCTATCCACCC 202 consensus_4700#2 CCCCGGCTGAGCGATCCCGAACGTCAAGGGTCGGTCAGACCGCTCAACAG---------- 273 **************** ********** ******** * ********* consensus_4700#0 CTTACGTCGACCCGTGCCAAAGTGCCCGGCTTGGTGCAGGTC-GGTGGTTTACACATCAA 359 consensus_4700#1 CTTACGTCGACCCGTGCCAAAGTGCCCGGCTTGGTGCAGGTCAGGTGGTTTACACATCAA 262 consensus_4700#2 ------------------------------------------------------------ consensus_4700#0 ACCGCCCAAACGTCTTCCGGACGA-TCTGCAAACGTTCATCGAC--GGTGCAACGGATG- 415 consensus_4700#1 ACCGCCAAACAGTCTTCCGGACGAGTCTGNAAACGTTCATCGAACAGGTGCAACGGATGA 322 consensus_4700#2 ------------------------------------------------------------ consensus_4700#0 GGGTGATCTA-TTTCAGTCTCGGCACAAAC 444 consensus_4700#1 GGGTGATCTAATTTCAGTCTCGA------- 345 consensus_4700#2 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||