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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4705#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1133 fasta sequence
[CAGTTCTTCCTGCAGCTGTGCCAGTCGACGGTGCTGCACCGCGAGAGCTACCAGGTGGTGAAGCGCGACTTTCTGCAGCAGCTGCTGGAGATGAAGGCGAACGGGGCGCTCGACATGCGGCAGGTGGCTGGCCAGTGCTATTCGTTCTTCATTGCCGGGTTCGAGACGTCCGCCAGCCTGCTCAGCTTCTGTCTGTACGAGCTGGCCAAGCATGGGGCGGTGCAGGACAGGCTGCGTGGCAGCATTGTGGCAGCACTGGACGAAACCGATGGTCAGCTGAGCTACGATATGGTGATGGCGCTTGGATATCTCGATCAGGTGGTGAAGGAAACACTGCGAATGTATCCACCGGTTGATTTCCTGTTCCGTGTCGCCAGCAATGACTATCCCATTGACGGGTTTGGGACCATCCCGCAGGGTACACTGTTGGTCGTTCCCGTCCACGCGCTACACCGTGATCCCGCCTACTATCCTCAGCCGGACGTGTACAATCCGGACCGGTTTGCCGCCAGTTCCAAGCTATCCGGCGCGTCGAAAAATCGCCCACCCTTTATGCCGTTTGGACTCGGGCCACGGCACTGTATCGGGGACACCTTCGGGCTGATGCTGGTGAAGGTCGGCTTGGTGGCAATGGTGCGATCGTTCCGCTTCACGCTGGACGTGGACCGTACGCCGGAAAACGTTACATTTAAGCCGCGTTCGCTTGTCCTAGCCGCTGGCAGCGGTATGTACCTGAACGTGGAGAGAGTTTGACCGGCTGAGCGATAAGACGTCGGGCCAGTAAACCCCCCTTTGCGGTGAAGTAGATGAGGGGGGTCTTTGGATAGAGGTAACTACCACGGCATCGATTATCGTATCACAGGTGTACGTACGCAAGGGTGTATGCCAACTCATCGTATTTTTGTGGNCTTTTATCTGCCGTCAGAATAGGGTGGCAACAATAGATATTAAAGTATGGGAAGCTTGGGGTAATATTCTATGTAAGTGGNCCTTCCCGTTTAAGACAAGAGAGAACCTTATCATGGGACACAAGGGGCAGAGCATAGTACCCACATGTGCAGCTGGATTTGAACCTAAACTAAAACTCTCTTCTGCCTCAANAATACTGGNCGGATCGCCCGCTAGCGCTTTAC]
[+] EMBL BX626702 [CAGTTCTTCCTGCAGCTGTGCCAGTCGACGGTGCTGCACCGCGAGAGCTACCAGGTGGTGAAGCGCGACTTTCTGCAGCAGCTGCTGGAGATGAAGGCGAACGGGGCGCTCGACATGCGGCAGGTGGCTGGCCAGTGCTATTCGTTCTTCATTGCCGGGTTCGAGACGTCCGCCAGCCTGCTCAGCTTCTGTCTGTACGAGCTGGCCAAGCATGGGGCGGTGCAGGACAGGCTGCGTGGCAGCATTGTGGCAGCACTGGACGAAACCGATGGTCAGCTGAGCTACGATATGGTGATGGCGCTTGGATATCTCGATCAGGTGGTGAAGGAAACACTGCGAATGTATCCACCGGTTGATTTCCTGTTCCGTGTCGCCAGCAATGACTATCCCATTGACGGGTTTGGGACCATCCCGCAGGGTACACTGTTGGTCGTTCCCGTCCACGCGCTACACCGTGATCCCGCCTACTATCCTCAGCCGGACGTGTACAATCCGGACCGGTTTGCCGCCAGTTCCAAGCTATCCGGCGCGTCGAAAAATCGCCCACCCTTTATGCCGTTTGGACTCGGGCCACGGCACTGTATCGGGGACACCTTCGGGCTGA ]
[+] EMBL BX621459 [ ATATCTCGATCAGGTGGTGAAGGAAACACTGCGAATGTATCCACCGGTTGATTTCCTGTTCCGTGTCGCCAGCAATGACTATCCCATTGACGGGTTTGGGACCATCCCGCAGGGTACACTGTTGGTCGTTCCCGTCCACGCGCTACACCGTGATCCCGCCTACTATCCTCAGCCGGACGTGTACAATCCGGACCGGTTTGCCGCCAGTTCCAAGCTATCCGGCGCGTCGAAAAATCGCCCACCCTTTATGCCGTTTGGACTCGGGCCACGGCACTGTATCGGGGACACCTTCGGGCTGATGCTGGTGAAGGTCGGCTTGGTGGCAATGGTGCGATCGTTCCGCTTCACGCTGGACGTGGACCGTACGCCGGAAAACGTTACATTTAAGCCGCGTTCGCTTGTCCTAGCCGCTGGCAGCGGTATGTACCTGAACGTGGAGAGAGTTTGACCGGCTGAGCGATAAGACGTCGGGCCAGTAAACCCCCCTTTGCGGTGAAGTAGATGAGGGGGGTCTTTGGATAGAGGTAACTACCACGGCATCGATTATCGTATCACAGGTGTACGTACGCAAGGGTGTATGCCAACTCATCGTATTTTTGTGGNCTTTTATCTGCCGTCAGAATAGGGTGGCAACAATAGATATTAAAGTATGGGAAGCTTGGGGTAATATTCTATGTAAGTGGNCCTTCCCGTTTAAGACAAGAGAGAACCTTATCATGGGACACAAGGGGCAGAGCATAGTACCCACATGTGCAGCTGGATTTGAACCTAAACTAAAACTCTCTTCTGCCTCAANAATACTGGNCGGATCGCCCGCTAGCGCTTTAC]
consensusID : consensus_4705#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 731 fasta sequence
[AGGCCAGAAATCGGCACGNTNGAGGACGATCTGATGGCACGGTACGCCACGGACGTATCGGCAGCTGTGCGTTCGGTATCGACTGTCGGACGATACGCGACCCGGGCTCGGAGTTCCGGGCGATGGGACACCGTGCGTTCCGGTGCAGCTTGCGGCGGATGTGGAAGCTGCGGTTCGGGTACGCCTGCCGGCGGGTTGCCGACGCGATGCGGCTGTGCGTGAGTGAGCCATCGGTGGAGCAGTTCTTCCTGCAGCTGTGCCAGTCGACGGTGCTGCACCGCGAGAGCTACCAGGTGGTGAAGCGCGACTTTCTGCAGCAGGCTGCTGGAGATGAAGACGTCCGCCAGGCCTGCTCAGCTTCTGTCTGTACGAGCTGGCCAAGCATGGGGCGGTGCAGGACAGGCTGCGTGGCAGCATTGTGGCAGCACTGGACGAAACCGATGGTCAGCTGAGCTACGATATGGTGATGGCGCTTGGATATCTCGATCAGGTGGTGAAGGAAACACTGCGAATGTATCCACCGGTTGATTTCCTGTTCCGTGTCGCCAGCAATGGACCTATCCCATTGACGGGTATTGGGACCATACCCGCAGGGGTAGCACATGGTTAGGGTCGGTACCCGNTACCACTGGCGNCTAACACCGGTTGAATCACCAGACGCGTACTATCCTCANCCAGGGACNGCGTGTTACCAATCCGGGAACCGGGATTTGCACGGNCCCANAGTTCCA]
[+] EMBL BX467925 [AGGCCAGAAATCGGCACGNTNGAGGACGATCTGATGGCACGGTACGCCACGGACGTATCGGCAGCTGTGCGTTCGGTATCGACTGTCGGACGATACGCGACCCGGGCTCGGAGTTCCGGGCGATGGGACACCGTGCGTTCCGGTGCAGCTTGCGGCGGATGTGGAAGCTGCGGTTCGGGTACGCCTGCCGGCGGGTTGCCGACGCGATGCGGCTGTGCGTGAGTGAGCCATCGGTGGAGCAGTTCTTCCTGCAGCTGTGCCAGTCGACGGTGCTGCACCGCGAGAGCTACCAGGTGGTGAAGCGCGACTTTCTGCAGCAGGCTGCTGGAGATGAAGACGTCCGCCAGGCCTGCTCAGCTTCTGTCTGTACGAGCTGGCCAAGCATGGGGCGGTGCAGGACAGGCTGCGTGGCAGCATTGTGGCAGCACTGGACGAAACCGATGGTCAGCTGAGCTACGATATGGTGATGGCGCTTGGATATCTCGATCAGGTGGTGAAGGAAACACTGCGAATGTATCCACCGGTTGATTTCCTGTTCCGTGTCGCCAGCAATGGACCTATCCCATTGACGGGTATTGGGACCATACCCGCAGGGGTAGCACATGGTTAGGGTCGGTACCCGNTACCACTGGCGNCTAACACCGGTTGAATCACCAGACGCGTACTATCCTCANCCAGGGACNGCGTGTTACCAATCCGGGAACCGGGATTTGCACGGNCCCANAGTTCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4705#0 ------------------------------------------------------------
consensus_4705#1 AGGCCAGAAATCGGCACGNTNGAGGACGATCTGATGGCACGGTACGCCACGGACGTATCG 60
consensus_4705#0 ------------------------------------------------------------
consensus_4705#1 GCAGCTGTGCGTTCGGTATCGACTGTCGGACGATACGCGACCCGGGCTCGGAGTTCCGGG 120
consensus_4705#0 -------------------------------------------------------CAGTT 5
consensus_4705#1 CGATGGGACACCGTGCGTTCCGGTGCAGCTTGCGGCGGATGTGGAAGCTGCGGTTCGGGT 180
* * *
consensus_4705#0 CTTCCTGCAGCTGTGCCAGTCGACG--GTGCTGCACCGCGAGAGCTACCAGGTGGTGAAG 63
consensus_4705#1 ACGCCTGCCGGCGGGTT-GCCGACGCGATGCGGCTGTGCGTGAGTGAGCCATCGGTGGAG 239
***** * * * * ***** *** ** *** *** * * **** **
consensus_4705#0 CGCGACTTTCTGCAGCAGCTGCTGGAGATGAAGGCGAACGGGGCGCTCGACATGCGGCAG 123
consensus_4705#1 CAGTTCTTCCTGCAGCTGTGCCAGTCGACGGTGCTGCACCGCGAGAGCTAC------CAG 293
* *** ******* * * * ** * * * ** * * * * ** ***
consensus_4705#0 GTGGCTGGCCAGTGCTATTCGTTCTTCATTGCCGG-GTTCGAGACGTCCGCCAG-CCTGC 181
consensus_4705#1 GTGGTGAAGCGCGACTTTCTGCAGCAGGCTGCTGGAGATGAAGACGTCCGCCAGGCCTGC 353
**** * ** * * *** ** * * ************* *****
consensus_4705#0 TCAGCTTCTGTCTGTACGAGCTGGCCAAGCATGGGGCGGTGCAGGACAGGCTGCGTGGCA 241
consensus_4705#1 TCAGCTTCTGTCTGTACGAGCTGGCCAAGCATGGGGCGGTGCAGGACAGGCTGCGTGGCA 413
************************************************************
consensus_4705#0 GCATTGTGGCAGCACTGGACGAAACCGATGGTCAGCTGAGCTACGATATGGTGATGGCGC 301
consensus_4705#1 GCATTGTGGCAGCACTGGACGAAACCGATGGTCAGCTGAGCTACGATATGGTGATGGCGC 473
************************************************************
consensus_4705#0 TTGGATATCTCGATCAGGTGGTGAAGGAAACACTGCGAATGTATCCACCGGTTGATTTCC 361
consensus_4705#1 TTGGATATCTCGATCAGGTGGTGAAGGAAACACTGCGAATGTATCCACCGGTTGATTTCC 533
************************************************************
consensus_4705#0 TGTTCCGTGTCGCCAGCAATGA--CTATCCCATTGACGGGT-TTGGGACCAT-CCCGCAG 417
consensus_4705#1 TGTTCCGTGTCGCCAGCAATGGACCTATCCCATTGACGGGTATTGGGACCATACCCGCAG 593
********************* ***************** ********** *******
consensus_4705#0 GGTACACTGTTGGTCGTTCCCGTCCACGCGCTAC-ACCGTGATCCCGCCTACTATCCTCA 476
consensus_4705#1 GGGTAGCACATGGTTAGGGTCGGT-ACCCGNTACCACTGGCGNCTAACACCGGTTGAATC 652
** * **** ** ** ** *** ** * * * *
consensus_4705#0 GCCGGACGTGTACAATCCGGACCGGTTTGCCGCCAGTTCCAAGCTATCCGGCGCGTCGAA 536
consensus_4705#1 ACCAGACGCGTACTATCCTCANCCAGGGACNGCGTGTTACCA---ATCCGGGAACCGGGA 709
** **** **** **** * * * ** *** * * ****** * *
consensus_4705#0 AAATCGCCCACCCTTTATGCCGTTTGGACTCGGGCCACGGCACTGTATCGGGGACACCTT 596
consensus_4705#1 TTTGCACGGNCCCANAGTTCCA-------------------------------------- 731
* * *** * **
consensus_4705#0 CGGGCTGATGCTGGTGAAGGTCGGCTTGGTGGCAATGGTGCGATCGTTCCGCTTCACGCT 656
consensus_4705#1 ------------------------------------------------------------
consensus_4705#0 GGACGTGGACCGTACGCCGGAAAACGTTACATTTAAGCCGCGTTCGCTTGTCCTAGCCGC 716
consensus_4705#1 ------------------------------------------------------------
consensus_4705#0 TGGCAGCGGTATGTACCTGAACGTGGAGAGAGTTTGACCGGCTGAGCGATAAGACGTCGG 776
consensus_4705#1 ------------------------------------------------------------
consensus_4705#0 GCCAGTAAACCCCCCTTTGCGGTGAAGTAGATGAGGGGGGTCTTTGGATAGAGGTAACTA 836
consensus_4705#1 ------------------------------------------------------------
consensus_4705#0 CCACGGCATCGATTATCGTATCACAGGTGTACGTACGCAAGGGTGTATGCCAACTCATCG 896
consensus_4705#1 ------------------------------------------------------------
consensus_4705#0 TATTTTTGTGGNCTTTTATCTGCCGTCAGAATAGGGTGGCAACAATAGATATTAAAGTAT 956
consensus_4705#1 ------------------------------------------------------------
consensus_4705#0 GGGAAGCTTGGGGTAATATTCTATGTAAGTGGNCCTTCCCGTTTAAGACAAGAGAGAACC 1016
consensus_4705#1 ------------------------------------------------------------
consensus_4705#0 TTATCATGGGACACAAGGGGCAGAGCATAGTACCCACATGTGCAGCTGGATTTGAACCTA 1076
consensus_4705#1 ------------------------------------------------------------
consensus_4705#0 AACTAAAACTCTCTTCTGCCTCAANAATACTGGNCGGATCGCCCGCTAGCGCTTTAC 1133
consensus_4705#1 ---------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||