cluster # 4706

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Anopheles gambiae
cluster # 4706 cluster # 4706 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4706#0 length = 628 sequences # 2

consensus_4706#1 length = 469 sequences # 1

consensusID : consensus_4706#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 628
fasta sequence

                              [CCGCGACACCGGCCGGGGGTTGGAAAAGTTCCGCAAAGCGCAGCGCCACGTGAAGTCGGCCAAGACCAAGTTCGACAAGTATACGCTGGACTGTTTGGAGAAGATTGACCTGTTGGCCGCCGCCCGGTGCAATATGTTCTCGCACGCCCTCGTCGGATACCAGAATGCCATCCTGCAGTTCGCCAAGAAGACGGACGAAACGTACAAGAACACGCTGAAGAGTTTGGCGAAAGACCCACACTATAGCTTCTCCATACTGAAGGAATTGACGCAGGCCAACCCGAACGAGGAAGAGAAAGAGGGCGCTCCAGGGGAGCCGGTCGAGTGCCGTTCCGACGACCACAAGCCCGCCGATGACGATCAGATGCTTTTCTTCAAGGACGACTATAAGGACGATGTGGGGAGCTTGAAGGGCATTATGGAGCCACCAACTGGCAAAGAAAACGTCCTGCAAGACGTAGCACTAGAAATCGACGCCCTTCTGTCGGGCGTCCCAGAGCTTAGTCCGAGCGGCTCCGCTGTCACAAAACCAGCGCAGGACGCTGCCGGGGCGGATCTGCTCGGGCTAAGCTTGGATGATGAGTTTTCTGACTTTATGTCGGCACCGGCACCGTTTTTGCCTTCAGCG]

[+] EMBL BM629453             [CCGCGACACCGGCCGGGGGTTGGAAAAGTTCCGCAAAGCGCAGCGCCACGTGAAGTCGGCCAAGACCAAGTTCGACAAGTATACGCTGGACTGTTTGGAGAAGATTGACCTGTTGGCCGCCGCCCGGTGCAATATGTTCTCGCACGCCCTCGTCGGATACCAGAATGCCATCCTGCAGTTCGCCAAGAAGACGGACGAAACGTACAAGAACACGCTGAAGAGTTTGGCGAAAGACCCACACTATAGCTTCTCCATACTGAAGGAATTGACGCAGGCCAACCCGAACGAGGAAGAGAAAGAGGGCGCTCCAGGGGAGCCGGTCGAGTGCCGTTCCGACGACCACAAGCCCGCCGATGACGATCAGATGCTTTTCTTCAAGGACGACTATAAGGACGATGTGGGGAGCTTGAAGGGCATTATGGAGCCACCAACTGGCAAAGAAAACGTCCTGCAAGACGTAGCACTAGAAATCGACGCCCTTCTGTCGGGCGTCCCAGAGCTTAGTCCGAGCGGCTCCGCTGTCACAAAACCAGCGCAGGACGCTGCCGGGGCGGATCTGCTCGGGCTAAGCTTGGATGATGAGTTTTCTGACTTTATGTCGGCACCGGCACCGTTTTTGCCTTCAGCG]
[+] EMBL BX617659             [                                                                                                                                                           GATACCAGAATGCCATCCTGCAGTTCGCCAAGAAGACGGACGAAACGTACAAGAACACGCTGAAGAGTTTGGCGAAAGACCCACACTATAGCTTCTCCATACTGAAGGAATTGACGCAGGCCAACCCGAACGAGGACGAGAAAGAGGGCGCCCCAGGGGAGCCGGTCGAGTGCCGTTCCGACGACAACAAACCCGCCGATGACGATCAGATGCTTTTCTTCAAGGACGACTATAAGGACGATGTGGGTAGCTTAAAGGGCATTATGGAGCCACCGACCGGCAAAGAAAACGTGCTGAAAGACGTAGCACTAGAAATAGACGCCCTTCTGTCGGGCGTCCCCGAGCTTA                                                                                                                             ]




>consensus_4706#0
CCGCGACACCGGCCGGGGGTTGGAAAAGTTCCGCAAAGCGCAGCGCCACGTGAAGTCGGC
CAAGACCAAGTTCGACAAGTATACGCTGGACTGTTTGGAGAAGATTGACCTGTTGGCCGC
CGCCCGGTGCAATATGTTCTCGCACGCCCTCGTCGGATACCAGAATGCCATCCTGCAGTT
CGCCAAGAAGACGGACGAAACGTACAAGAACACGCTGAAGAGTTTGGCGAAAGACCCACA
CTATAGCTTCTCCATACTGAAGGAATTGACGCAGGCCAACCCGAACGAGGAAGAGAAAGA
GGGCGCTCCAGGGGAGCCGGTCGAGTGCCGTTCCGACGACCACAAGCCCGCCGATGACGA
TCAGATGCTTTTCTTCAAGGACGACTATAAGGACGATGTGGGGAGCTTGAAGGGCATTAT
GGAGCCACCAACTGGCAAAGAAAACGTCCTGCAAGACGTAGCACTAGAAATCGACGCCCT
TCTGTCGGGCGTCCCAGAGCTTAGTCCGAGCGGCTCCGCTGTCACAAAACCAGCGCAGGA
CGCTGCCGGGGCGGATCTGCTCGGGCTAAGCTTGGATGATGAGTTTTCTGACTTTATGTC
GGCACCGGCACCGTTTTTGCCTTCAGCG

consensusID : consensus_4706#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 469
fasta sequence

                              [GATNGCCGAGGTGAGTTGGNGAAAGACCACACTATACTTCTCATACTGAGGAATTGACGCAGGCAACCGAACGAGGACGAGAAAGAGGGCTGCCCCAGNGGGAGCCGGTCGAGTGGCGTTCCGACGACAACAAACCGGCGATGACGATCAGATGCTTTTCTTCAAGGGACGACTATAAGTGACGATGTGGGTAGCTTAAAGGGCATTATGGAGCCACGACGGCAAGAAAACGTGCTGAAAGACGTAGCACTAGAAATAGACGCCCTTCTGTCGGGCGTCCCCGAGCTTAGTCCGAACGGGTCCGCGTGCCACAAAACCAGCGCAGTGACGCTGCCGGGGCGGATCTTGGTCGGCTAAGCTTGGATGATGAGTTTTCGGACTTTATGTCGGCACCGGCACCATTTTTGCTTCAGCGCTGCTAACGAACTTGCATACTTACCGACTGATGGTGCGTTCGACTTTTCCGCCA]

[+] EMBL AL931280             [GATNGCCGAGGTGAGTTGGNGAAAGACCACACTATACTTCTCATACTGAGGAATTGACGCAGGCAACCGAACGAGGACGAGAAAGAGGGCTGCCCCAGNGGGAGCCGGTCGAGTGGCGTTCCGACGACAACAAACCGGCGATGACGATCAGATGCTTTTCTTCAAGGGACGACTATAAGTGACGATGTGGGTAGCTTAAAGGGCATTATGGAGCCACGACGGCAAGAAAACGTGCTGAAAGACGTAGCACTAGAAATAGACGCCCTTCTGTCGGGCGTCCCCGAGCTTAGTCCGAACGGGTCCGCGTGCCACAAAACCAGCGCAGTGACGCTGCCGGGGCGGATCTTGGTCGGCTAAGCTTGGATGATGAGTTTTCGGACTTTATGTCGGCACCGGCACCATTTTTGCTTCAGCGCTGCTAACGAACTTGCATACTTACCGACTGATGGTGCGTTCGACTTTTCCGCCA]




>consensus_4706#1
GATNGCCGAGGTGAGTTGGNGAAAGACCACACTATACTTCTCATACTGAGGAATTGACGC
AGGCAACCGAACGAGGACGAGAAAGAGGGCTGCCCCAGNGGGAGCCGGTCGAGTGGCGTT
CCGACGACAACAAACCGGCGATGACGATCAGATGCTTTTCTTCAAGGGACGACTATAAGT
GACGATGTGGGTAGCTTAAAGGGCATTATGGAGCCACGACGGCAAGAAAACGTGCTGAAA
GACGTAGCACTAGAAATAGACGCCCTTCTGTCGGGCGTCCCCGAGCTTAGTCCGAACGGG
TCCGCGTGCCACAAAACCAGCGCAGTGACGCTGCCGGGGCGGATCTTGGTCGGCTAAGCT
TGGATGATGAGTTTTCGGACTTTATGTCGGCACCGGCACCATTTTTGCTTCAGCGCTGCT
AACGAACTTGCATACTTACCGACTGATGGTGCGTTCGACTTTTCCGCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4706#0      CCGCGACACCGGCCGGGGGTTGGAAAAGTTCCGCAAAGCGCAGCGCCACGTGAAGTCGGC 60
consensus_4706#1      ------------------------------------------------------------
                                                                                  

consensus_4706#0      CAAGACCAAGTTCGACAAGTATACGCTGGACTGTTTGGAGAAGATTGACCTGTTGGCCGC 120
consensus_4706#1      ------------------------------------------------------------
                                                                                  

consensus_4706#0      CGCCCGGTGCAATATGTTCTCGCACGCCCTCGTCGGATACCAGAATGCCATCCTGCAGTT 180
consensus_4706#1      ------------------------------------------------------------
                                                                                  

consensus_4706#0      CGCCAAGAAGACGGACGAAACGTACAAGAACACGCTGAAGAGTTTGGCGAAAGACCCACA 240
consensus_4706#1      ---------------------------GATNGCCGAGGTGAGTT-GGNGAAAGACC-ACA 31
                                                 **   *   *  ***** ** ******** ***

consensus_4706#0      CTATAGCTTCTCCATACTGAAGGAATTGACGCAGGCCAACCCGAACGAGGAAGAGAAAGA 300
consensus_4706#1      CTATA-CTTCTC-ATACTGA-GGAATTGACGCAGGC--AACCGAACGAGGACGAGAAAGA 86
                      ***** ****** ******* ***************  * *********** ********

consensus_4706#0      GGGC-GCTCCAGGGG-AGCCGGTCGAGTGCCGTTCCGACGACCACAAGCCCGCCGATGAC 358
consensus_4706#1      GGGCTGCCCCAGNGGGAGCCGGTCGAGTGGCGTTCCGACGACAACAAACCGGC-GATGAC 145
                      **** ** **** ** ************* ************ **** ** ** ******

consensus_4706#0      GATCAGATGCTTTTCTTCAAGG-ACGACTATAAG-GACGATGTGGGGAGCTTGAAGGGCA 416
consensus_4706#1      GATCAGATGCTTTTCTTCAAGGGACGACTATAAGTGACGATGTGGGTAGCTTAAAGGGCA 205
                      ********************** *********** *********** ***** *******

consensus_4706#0      TTATGGAGCCACCAACTGGCAAAGAAAACGTCCTGCAAGACGTAGCACTAGAAATCGACG 476
consensus_4706#1      TTATGGAGCCACGA--CGGCAA-GAAAACGTGCTGAAAGACGTAGCACTAGAAATAGACG 262
                      ************ *   ***** ******** *** ******************* ****

consensus_4706#0      CCCTTCTGTCGGGCGTCCCAGAGCTTAGTCCGAGCGGCTCCGC-TGTCACAAAACCAGCG 535
consensus_4706#1      CCCTTCTGTCGGGCGTCCCCGAGCTTAGTCCGAACGGGTCCGCGTGCCACAAAACCAGCG 322
                      ******************* ************* *** ***** ** *************

consensus_4706#0      CAG-GACGCTGCCGGGGCGGATCTGCTCGGGCTAAGCTTGGATGATGAGTTTTCTGACTT 594
consensus_4706#1      CAGTGACGCTGCCGGGGCGGATCTTGGTCGGCTAAGCTTGGATGATGAGTTTTCGGACTT 382
                      *** ********************     ************************* *****

consensus_4706#0      TATGTCGGCACCGGCACCGTTTTTGCCTTCAGCG-------------------------- 628
consensus_4706#1      TATGTCGGCACCGGCACCATTTTTGC-TTCAGCGCTGCTAACGAACTTGCATACTTACCG 441
                      ****************** ******* *******                          

consensus_4706#0      ----------------------------
consensus_4706#1      ACTGATGGTGCGTTCGACTTTTCCGCCA 469