These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4722#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1048 fasta sequence [ACGCCTGGGGTGCCAACAGCCATGCCCAGCTGGGACTGGGCTACGCGACGGAACTATGTGAATCCCCGCAACCATTGACCGGTGTGCCGTTTCGTGCCGGCGATATAGAATGTGTCGCTGCCGGTGGTGGCCATACGCTTGTAGCGACGGTCGATGGAAGATTGTATGCTTGCGGATGGAACAACCGAGGCCAGCTTGGTTTGGGACACGTGAATCACTGTGTCCGGTTCGAGCCCGTCGGTGAGTTCGGGTTCAAGCGGCTGTACGCAGGATGGGACTCATCGGCAGGGATAAGCGCATCCGGAGACCTGTACGTATGGGGATCGAATGTGTGGCAGCAGATAGGAGAAGCAGGGGTTAAAAGTATCCCAACACCCACACGGATTGAGCTACCGGAAGGTGGACCTGTAGCGAAAGTCACCTTCGGTTTACAGTACATGGCGGTGCTGATGGAGAGCGGAAAGGTTTGGGTGTTGGGAAAATAAGCTCCGTTCGTGATGTGGTTAGTGGAGATAATCATTTGGTGCTGCTAACTGGCGACCGTCGGATCGAATGCCTTGGCGACAATAAACACGGCCAATGGCTAGCTGACAATAGCATATTGGAAGACGTTACAAAGCTTGAATCTGGATGGACCCACTCGGGATGTCTGACCGTGAATGGGACCGTGCATCTGTGGGGAAGAAAAAATTACGGACAGCTTGGACGACCGGCCCCGACTGCTAGTTCCTCAGCTCCACAAAAGCTTCAACTAGAAACAGAACAAATGGAGCTGAACGATTTTAGTTTGGGATCCCAGCACGGTGTAGCACTGACACGCGATGGACGTGTGTACTGTTGGGGCTGGAACGAGCATGGCAACTGTGGCACGGGAAGCACAGCGAATGTATTGGTTCCTACCCCGATAGACATCCCCGTGCCGGTGAGGAAGGTGATCTGCGGTGCTGGTTATACGATGGCATTCACCTTAAACACACATCATTCTTCTCGCAATGCAATCGTTTCCATCACCCACCAGTGCCATCGACCCATTTATTAACGGGCTGAA] [+] EMBL CNS08O9I [ACGCCTGGGGTGCCAACAGCCATGCCCAGCTGGGACTGGGCTACGCGACGGAACTATGTGAATCCCCGCAACCATTGACCGGTGTGCCGTTTCGTGCCGGCGATATAGAATGTGTCGCTGCCGGTGGTGGCCATACGCTTGTAGCGACGGTCGATGGAAGATTGTATGCTTGCGGATGGAACAACCGAGGCCAGCTTGGTTTGGGACACGTGAATCACTGTGTCCGGTTCGAGCCCGTCGGTGAGTTCGGGTTCAAGCGGCTGTACGCAGGATGGGACTCATCGGCAGGGATAAGCGCATCCGGAGACCTGTACGTATGGGGATCGAATGTGTGGCAGCAGATAGGAGAAGCAGGGGTTAAAAGTATCCCAACACCCACACGGATTGAGCTACCGGAAGGTGGACCTGTAGCGAAAGTCACCTTCGGTTTACAGTACATGGCGGTGCTGATGGAGAGCGGAAAGGTTTGGGTGTTGGGAAAATAAGCTCCGTTCGTGATGTGGTTAGTGGAGATAATCATTTGGTGCTGCTAACTGGCGACCGTCGGATCGAATGCCTTGGCGACAATAAACACGGCCAATGGCTAGCTGACAATAGCATATTGGAAGACGTTACAAAGCTTGAATCTGGATGGACCCACTCGGGATGTCTGACCGTGAATGGGACCGTGCATCTGTGGGGAAGAAAAAATTACGGACAGCTTGGACGACCGGCCCCGACTGCTAGTTCCTCAGCTCCACAAAAGCTTCAACTAGAAACAGAACAAATGGAGCTGAACGATTTTAGTTTGGGATCCCAGCACGGTGTAGCACTGACACGCGATGGACGTGTGTACTGT ] [-] EMBL CNS08O9J [ GCAGGGATAAGCGCATCCGGAGACCTGTACGTATGGGGATCGAATGTGTGGCAGCAGATAGGAGAAGCAGGGGTTAAAAGTATCCCAACACCCACACGGATTGAGCTACCGGTTTGTGGACCTGTAGCGAAAGTTTACTTCGGTTTACAGTACATGGCGGTGCTGATGGAGAGCGGAAAGGTTTGGGTGTTGGGAAAATAAGCTCCGTTCGTGATGTGGTTAGTGGAGATAATCATTTGGTGCTGCTTACTGGCGACCGTCGGATCGAATGCCTTGGCGACAATAAACACGGCCAATGGCTAGCTGACAATAGCATATTGGAAGACGTTACAAAGCTTGAATCTGGATGGACCCACTCGGGATGTCTGACCGTGAATGGGACCGTGCATCTGTGGGGAAGAAACAATTACGGACAGCTTGGACGACCGGCCCCGACTGCTAGTTCCTCAGCTCCACAAAAGCTTCAACTAGAAACAGAACAAATGGAGCTGAACGATTTTAGTTTGGGATCCCAGCACGGTGTAGCACTGACACGCGATGGACGTGTGTACTGTTGGGGCTGGAACGAGCATGGCAACTGTGGCACGGGAAGCACAGCGAATGTATTGGTTCCTACCCCGATAGACATCCCCGTGCCGGTGAGGAAGGTGATCTGCGGTGCTGGTTATACGATGGCATTCACCTTAAACACACATCATTCTTCTCGCAATGCAATCGTTTCCATCACCCACCAGTGCCATCGACCCATTTATTAACGGGCTGAA] consensusID : consensus_4722#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 650 fasta sequence [CCGCAGCCATGCCCAGCTGGGACTGGGCTACGCGACGGAGCAATGTGAATCCCCGCAACCATTGACCGATGTGCCGTTTCGTGCCGGCGATATAGAATGTGTCGCTGCCGGTGGTGGCCATACGCTTGTAGCGACGGTCGACGGGAGATTGTATGCTTGCGGATGGAACAACCGAGGCCAGCTTGGTTTGGGACACGCGAATGACTGTGTTCGGTTCGAGTCCGTCGGTGAGTTCGGGTTCAAGCGGCTGTACGCAGGATGGGACACATCGGCAGGGATAAGCGCATCCGGAGACCTGTACGTATGGGGATCGAATGTGTGGCAGCAGATAGGACAAGCAGGGGTTAAAAGTATCCCAACACCCACACGGATTGAGCTACCGGAAGGTGGACCTGTAGCGAAAGTAACTTTCGGTTTACAGATACATGGCGGTGCTGATGGAGAAGCGGAGAAGGTTTGGGTGTTGGGAAAATGTAAATTCCTAGCCGATTACCCGCTGGAAGTTGCATCGAAGCTAGCGATTCGATGTCTCTGGGATAGAAGCTCGGTCCGGGATGTGGTCAGTGGAGATAATCATTTGGTGCTGCTAGCCGGCGACCGTCGAATCGAATGCCTTGGCGACAACAAACATGGCCAATGGTTGGCGGGCA] [+] EMBL BM579822 [CCGCAGCCATGCCCAGCTGGGACTGGGCTACGCGACGGAGCAATGTGAATCCCCGCAACCATTGACCGATGTGCCGTTTCGTGCCGGCGATATAGAATGTGTCGCTGCCGGTGGTGGCCATACGCTTGTAGCGACGGTCGACGGGAGATTGTATGCTTGCGGATGGAACAACCGAGGCCAGCTTGGTTTGGGACACGCGAATGACTGTGTTCGGTTCGAGTCCGTCGGTGAGTTCGGGTTCAAGCGGCTGTACGCAGGATGGGACACATCGGCAGGGATAAGCGCATCCGGAGACCTGTACGTATGGGGATCGAATGTGTGGCAGCAGATAGGACAAGCAGGGGTTAAAAGTATCCCAACACCCACACGGATTGAGCTACCGGAAGGTGGACCTGTAGCGAAAGTAACTTTCGGTTTACAGATACATGGCGGTGCTGATGGAGAAGCGGAGAAGGTTTGGGTGTTGGGAAAATGTAAATTCCTAGCCGATTACCCGCTGGAAGTTGCATCGAAGCTAGCGATTCGATGTCTCTGGGATAGAAGCTCGGTCCGGGATGTGGTCAGTGGAGATAATCATTTGGTGCTGCTAGCCGGCGACCGTCGAATCGAATGCCTTGGCGACAACAAACATGGCCAATGGTTGGCGGGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4722#0 ACGCCTGGGGTGCCAACAGCCATGCCCAGCTGGGACTGGGCTACGCGACGGAACTATGTG 60 consensus_4722#1 -------------CCGCAGCCATGCCCAGCTGGGACTGGGCTACGCGACGGAGCAATGTG 47 * ************************************ * ***** consensus_4722#0 AATCCCCGCAACCATTGACCGGTGTGCCGTTTCGTGCCGGCGATATAGAATGTGTCGCTG 120 consensus_4722#1 AATCCCCGCAACCATTGACCGATGTGCCGTTTCGTGCCGGCGATATAGAATGTGTCGCTG 107 ********************* ************************************** consensus_4722#0 CCGGTGGTGGCCATACGCTTGTAGCGACGGTCGATGGAAGATTGTATGCTTGCGGATGGA 180 consensus_4722#1 CCGGTGGTGGCCATACGCTTGTAGCGACGGTCGACGGGAGATTGTATGCTTGCGGATGGA 167 ********************************** ** ********************** consensus_4722#0 ACAACCGAGGCCAGCTTGGTTTGGGACACGTGAATCACTGTGTCCGGTTCGAGCCCGTCG 240 consensus_4722#1 ACAACCGAGGCCAGCTTGGTTTGGGACACGCGAATGACTGTGTTCGGTTCGAGTCCGTCG 227 ****************************** **** ******* ********* ****** consensus_4722#0 GTGAGTTCGGGTTCAAGCGGCTGTACGCAGGATGGGACTCATCGGCAGGGATAAGCGCAT 300 consensus_4722#1 GTGAGTTCGGGTTCAAGCGGCTGTACGCAGGATGGGACACATCGGCAGGGATAAGCGCAT 287 ************************************** ********************* consensus_4722#0 CCGGAGACCTGTACGTATGGGGATCGAATGTGTGGCAGCAGATAGGAGAAGCAGGGGTTA 360 consensus_4722#1 CCGGAGACCTGTACGTATGGGGATCGAATGTGTGGCAGCAGATAGGACAAGCAGGGGTTA 347 *********************************************** ************ consensus_4722#0 AAAGTATCCCAACACCCACACGGATTGAGCTACCGGAAGGTGGACCTGTAGCGAAAGTCA 420 consensus_4722#1 AAAGTATCCCAACACCCACACGGATTGAGCTACCGGAAGGTGGACCTGTAGCGAAAGTAA 407 ********************************************************** * consensus_4722#0 CCTTCGGTTTACAG-TACATGGCGGTGCTGATGGAGA-GCGGA-AAGGTTTGGGTGTTGG 477 consensus_4722#1 CTTTCGGTTTACAGATACATGGCGGTGCTGATGGAGAAGCGGAGAAGGTTTGGGTGTTGG 467 * ************ ********************** ***** **************** consensus_4722#0 GAAAATAAGCTCCGTTCGTGATGTGGTTAGTGGAGATAATCATTTGGTGCTGCTAACTGG 537 consensus_4722#1 GAAAATGTAAATTCCTAGCCGATTACCCGCTGGAAGTTG-CATCGAAGCTAGCGATTCGA 526 ****** * * * **** * *** ** * * consensus_4722#0 CGACCGTCGGATCGAATGCCTTGGCGACAATAAACACGGCCAATGGCTAGCTGACAATAG 597 consensus_4722#1 TGTCTCTGGGATAGAA-GCTCGGTCCGGGAT----GTGGTCAGTGG--AGATAATCATTT 579 * * * **** *** ** * * ** ** ** *** ** * * ** consensus_4722#0 CATATTGGAAGACGTTACAAAGCTTGAATCTGGATGGACCCACTCGGGATGTCTGACCGT 657 consensus_4722#1 GGTGCTGCTAGCCG--GCGACCGTCGAATC-GAATG-----CCTTGG------CGACAAC 625 * ** ** ** * * * ***** * *** ** ** *** consensus_4722#0 GAATGGGACCGTGCATCTGTGGGGAAGAAAAAATTACGGACAGCTTGGACGACCGGCCCC 717 consensus_4722#1 AAACATGGCCAATGGTTGGCGGGCA----------------------------------- 650 ** * ** * * *** * consensus_4722#0 GACTGCTAGTTCCTCAGCTCCACAAAAGCTTCAACTAGAAACAGAACAAATGGAGCTGAA 777 consensus_4722#1 ------------------------------------------------------------ consensus_4722#0 CGATTTTAGTTTGGGATCCCAGCACGGTGTAGCACTGACACGCGATGGACGTGTGTACTG 837 consensus_4722#1 ------------------------------------------------------------ consensus_4722#0 TTGGGGCTGGAACGAGCATGGCAACTGTGGCACGGGAAGCACAGCGAATGTATTGGTTCC 897 consensus_4722#1 ------------------------------------------------------------ consensus_4722#0 TACCCCGATAGACATCCCCGTGCCGGTGAGGAAGGTGATCTGCGGTGCTGGTTATACGAT 957 consensus_4722#1 ------------------------------------------------------------ consensus_4722#0 GGCATTCACCTTAAACACACATCATTCTTCTCGCAATGCAATCGTTTCCATCACCCACCA 1017 consensus_4722#1 ------------------------------------------------------------ consensus_4722#0 GTGCCATCGACCCATTTATTAACGGGCTGAA 1048 consensus_4722#1 ------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||