These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4746#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 925 fasta sequence [CCGCGGACGCGTGGGCGTGCAACGTGCTGCAGCGTTACGCAAACAAAACAAAAAAACGTTACGAGGATGGTGTTCTCCACGCTAGCGGTCCTGCTGGCACTGGGCAGCCTGGCCGCGGTCTACCTGTACCGGCGGTTCGGCGAGATGCTGAGGCACACCGGCAAACTGGGTGGCCCACCGGCCTATCCGATCCTCGGGAATGGGTTAATGTTTCTCAACAAATCGCCCGCTGATTTTCTACGGATCATTGGGGAGTTGATACAGCGGTACGGGGACTGCTTTCGCGTTTGGCTCGGTACCCAGCTGGTGATCGTGATGGGCGATCCAAAGGATATTGAGGTACTGCTAAGCAGCCCGAAGTATATCGACAAATCGACCGAGTACGACTTCATCCGACCCTGGCTGGGCGAGGGTTTGCTCACAAGCCGTGGCCGCAAATGGCACACCCACCGGAAGGTGATCACGCCGACGTTTCACTTCAAAATACTGGAACAGTTTGTGGAGATTTTCGATCGGCAGAGCAGCACGTTCATCAAGGTGCTGGAACCGTTTGCCGCGTCGGGCAAATCGTTCGACATCTTCCCGCAGGTGACACTGTGCGCGTTGGATGTGATATGT------GCTATGGGAACGAAGGTGAATGCACAGATCAACTCTACTTCCGACTATGTGCTAGCAGTAAAGGAGATCACGAATCTCATTCAGCTGAGGTTTTACGATTTTCTCATCCGGTATGACATTTTCTTCCGCCTATCCGCGAACGCTCGCAAGCAAAGAAAGGTGCTGCAGGTGCTGCACAGCTACACGGGACAGTGTGATCAAGGGGCCGGCGTCAGCAGCTCGCAAGCATACAGCAAAGTGGTGAACAGCAAGAGGCAAGCGATCAGGATCTGGGCATCAAGAAGCGTAATGGCCTTTCTGGACATGC] [+] EMBL BM577887 [CCGCGGACGCGTGGGCGTGCAACGTGCTGCAGCGTTACGCAAACAAAACAAAAAAACGTTACGAGGATGGTGTTCTCCACGCTAGCGGTCCTGCTGGCACTGGGCAGCCTGGCCGCGGTCTACCTGTACCGGCGGTTCGGCGAGATGCTGAGGCACACCGGCAAACTGGGTGGCCCACCGGCCTATCCGATCCTCGGGAATGGGTTAATGTTTCTCAACAAATCGCCCGCTGATTTTCTACGGATCATTGGGGAGTTGATACAGCGGTACGGGGACTGCTTTCGCGTTTGGCTCGGTACCCAGCTGGTGATCGTGATGGGCGATCCAAAGGATATTGAGGTACTGCTAAGCAGCCCGAAGTATATCGACAAATCGACCGAGTACGACTTCATCCGACCCTGGCTGGGCGAGGGTTTGCTCACAAGCCGTGGCCGCAAATGGCACACCCACCGGAAGGTGATCACGCCGACGTTTCACTTCAAAATACTGGAACAGTTTGTGGAGATTTTCGATCGGCAGAGCAGCACGTTCATCAAGGTGCTGGAACCGTTTGCCGCGTCGGGCAAATCGTTCGACATCTTCCCGCAGGTGACACTGTGCGCGTTGGATGTGATATGT GCTATGGGAACGAAGGTGAATGCACAGATCAACTCTACTTCCGACTATGTGCTAGCAGTAAAGGAGATCACGAATCTCA ] [+] EMBL BM621929 [ ccGCTCGGTACCCAGCTGGTGATCGTGATGGGCGATCCAAAGGATATTGAGGTACTGCTAAGCAGCCCGAAGTATATCGACAAATCGACCGAGTACGACTTCATCCGACCCTGGCTGGGCGAGGGTTTGCTCACAAGCCGTGGCCGCAAATGGCACACCCACCGGAAGGTGATCACGCCGACGTTTCACTTCAAAATACTGGAACAGTTTGTGGAGATTTTCGATCGGCAGAGCAGCACGTTCATCAAGGTGCTGGAACCGTTTGCCGCGTCGGGCAAATCGTTCGACATCTTCCCGCAGGTGACACTGTGCGCGTTGGATGTGATATGTGAGTCAGCTATGGGAACGAAGGTGAATGCACAGATCAACTCTACTTCCGACTATGTGCTAGCAGTAAAGGAGATCACGAATCTCATTCAGCTGAGGTTTTACGATTTTCTCATCCGGTATGACATTTTCTTCCGCCTATCCGCGAACGCTCGCAAGCAAAGAAAGGTGCTGCAGGTGCTGCACAGCTACACGGGACAGTGTGATCAAGGGGCCGGCGTCAGCAGCTCGCAAGCATACAGCAAAGTGGTGAACAGCAAGAGGCAAGCGATCAGGATCTGGGCATCAAGAAGCGTAATGGCCTTTCTGGACATGC] consensusID : consensus_4746#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 477 fasta sequence [GCCGAGGTTTTGCAGCTCGCAGCATACAGCAAGTGGTGAACAGGAAGAGGCAAGCGATCAGGATCTGGGCATCAAGAAGCGTATGGGCTTTCTGGACATGCTGCTCCAGTCGATGATCGATGGGCGTCCGCTGACCGATCTCGAGATACGCGAGGAGTGTGGACACGTTCATGTTCGAGGGGCACGATACGACGAGCGTCTGCGAGTAAAGCTATTTTTGCATGTACAGGNATTGAGGCCAAAAAGCCCGAACCATATGNGGCACAGAAAAAGCTCTGTTCGANGGAGGTTGGAGGGTAGTGTTGGGACTGGAGTTGGTGGGTCCCGGTAGNGCGGGTTCGGTGGCATCCGTATCGGCTGGTTCTCTGNGTCACCCGTTGNGCTTGNTTGCTTTNTCTCTGGGTTATTGCGGGGCTTGATTCTTGGGGAGTCCTTGGGTCGGATCCGAAGGGTGGGACNCCTCTTCCGGGGCTTGTC] [+] EMBL AL931301 [GCCGAGGTTTTGCAGCTCGCAGCATACAGCAAGTGGTGAACAGGAAGAGGCAAGCGATCAGGATCTGGGCATCAAGAAGCGTATGGGCTTTCTGGACATGCTGCTCCAGTCGATGATCGATGGGCGTCCGCTGACCGATCTCGAGATACGCGAGGAGTGTGGACACGTTCATGTTCGAGGGGCACGATACGACGAGCGTCTGCGAGTAAAGCTATTTTTGCATGTACAGGNATTGAGGCCAAAAAGCCCGAACCATATGNGGCACAGAAAAAGCTCTGTTCGANGGAGGTTGGAGGGTAGTGTTGGGACTGGAGTTGGTGGGTCCCGGTAGNGCGGGTTCGGTGGCATCCGTATCGGCTGGTTCTCTGNGTCACCCGTTGNGCTTGNTTGCTTTNTCTCTGGGTTATTGCGGGGCTTGATTCTTGGGGAGTCCTTGGGTCGGATCCGAAGGGTGGGACNCCTCTTCCGGGGCTTGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4746#0 CCGCGGACGCGTGGGCGTGCAACGTGCTGCAGCGTTACGCAAACAAAACAAAAAAACGTT 60 consensus_4746#1 ------------------------------------------------------------ consensus_4746#0 ACGAGGATGGTGTTCTCCACGCTAGCGGTCCTGCTGGCACTGGGCAGCCTGGCCGCGGTC 120 consensus_4746#1 ------------------------------------------------------------ consensus_4746#0 TACCTGTACCGGCGGTTCGGCGAGATGCTGAGGCACACCGGCAAACTGGGTGGCCCACCG 180 consensus_4746#1 --------------------------------------------------------GCCG 4 *** consensus_4746#0 -GCCTATCCGATCCTCGGGAATGGGTTAATGTTTCTCAACAAATCGCCCGCTGATTTTCT 239 consensus_4746#1 AGGTTTTGCAGCTCGCAGCATACAGCAAGTGGTGAACAGGAAGAGGCAAGC-GATCAGGA 63 * * * * * * * * * * ** * ** ** ** ** *** consensus_4746#0 ACGGATCATTGGGGAGTTGATACAGCGGTACGGGGACTGCTTTCGCGTTTGGC--TCGGT 297 consensus_4746#1 TCTGGGCATCAAGAAGC--GTATGGGCTTTCTGGACATGCTGCTCCAGTCGATGATCGAT 121 * * *** * ** ** * * * ** **** * * * *** * consensus_4746#0 ACCCAGCTGGTGATCG-TGATGGGCGATCCAAAGGATATTGAGGTACTGCTAAGCAGCCC 356 consensus_4746#1 GGGCGTCCGCTGACCGATCTCGAGATACGCGAGGAGTGTGGACACGTTCAT-----GTTC 176 * * * *** ** * * * * * * * * * ** * * * * consensus_4746#0 GAAGTATATCGACAAATCGACCGAGTACGACTTCATCCGACCCTGGCTGGGCGAGGGTTT 416 consensus_4746#1 GAGGGGCA-CGATACGACGAGCGTCTGCGAGTAAAGCTATTTTTGCATGTACAGGNATTG 235 ** * * *** * *** ** * *** * * * ** ** * * ** consensus_4746#0 --GCTCACAAGCCGTGGCCGCAAATGGCACACCCACCGGAAGGTGATCACGCCGACGTTT 474 consensus_4746#1 AGGCCAAAAAGCCCGAACCATATGNGGCACAGAAA----AAGCTCTGTTCGANGGAGGTT 291 ** * ***** ** * ****** * *** * ** * * ** consensus_4746#0 CACTTCAAAATACTGGAACAGTTTGTGGAGATTTTCGATCGGCAGAGCAGCACGTTCATC 534 consensus_4746#1 GGAGG-GTAGTGTTGGGACTGGAGTTGGTGGGTCCCGGTAGNGCGGGTTCGGTGG-CATC 349 * * *** ** * *** * * ** * * * * * **** consensus_4746#0 AAGGTGCTGGAACCGTTTGCCGCGTCGGGCAAATCGTTCGACATCTTCCCGCAGGTGACA 594 consensus_4746#1 --CGTATCGGC-TGGTTCTCTGNGTCACCCGTTGNGCTTGNTTGCTTTNTCTCTGGGTTA 406 ** ** *** * * *** * * * * *** * * * consensus_4746#0 CTGTGCGCGTTGGATGTGATATGTGCTATGGGAACGAAGGTGAATGCACAGATCAACTCT 654 consensus_4746#1 TTGCG-GGGCTTGATTCTTGGGGAGTCCTTGGGTCGGATCCGAAGG-GTGGGACNCCTCT 464 ** * * * * *** * * * ** ** * *** * * * **** consensus_4746#0 ACTTCCGACTATGTGCTAGCAGTAAAGGAGATCACGAATCTCATTCAGCTGAGGTTTTAC 714 consensus_4746#1 TCCGGGGCTTGTC----------------------------------------------- 477 * * * * consensus_4746#0 GATTTTCTCATCCGGTATGACATTTTCTTCCGCCTATCCGCGAACGCTCGCAAGCAAAGA 774 consensus_4746#1 ------------------------------------------------------------ consensus_4746#0 AAGGTGCTGCAGGTGCTGCACAGCTACACGGGACAGTGTGATCAAGGGGCCGGCGTCAGC 834 consensus_4746#1 ------------------------------------------------------------ consensus_4746#0 AGCTCGCAAGCATACAGCAAAGTGGTGAACAGCAAGAGGCAAGCGATCAGGATCTGGGCA 894 consensus_4746#1 ------------------------------------------------------------ consensus_4746#0 TCAAGAAGCGTAATGGCCTTTCTGGACATGC 925 consensus_4746#1 ------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||