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Anopheles gambiae
cluster # 4753 cluster # 4753       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4753#0 length = 831 sequences # 2  
consensus_4753#1 length = 775 sequences # 1  

consensusID : consensus_4753#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 831
fasta sequence
                              [CTTATACCGATATTTTATTGCATACGTCATTCATAGTCAAACTCCAATCCACTGCCTTCAAAATGGTCCCTTATCCAGCCGTCGAATCGTGCAGACAATGCCGAGTCCATGTGATTTTTCCAATCGCCAATCTCGCCTTTGCGAATGAACTTCACTCCTGCATCATTCTGGATGATCGGTGAATCTTTCATCAGTGGCTCCAGATTAACGGCGGGGTTGCGCTGCATCCGTTCAAACTGCAGGTGATCACACATTGTTTGCACCTCCCCGTCGGTCAAGGCACGGCCAAATTCCAGAAATTCAGCACACTGTCTTATCACGGTCGGCAAGTTGCGCTTCATGTCCTCGTACTTCAAGAAAAGAATATTGCCCTGGTTGCGTCGCTTTCAGAAAGCCAGTGCATGGGCCCACATTGGCCCGATTGGGGCTTGGTCCGCCAGAAAGATGTCGCAGCACTCTTCGAACGTACCTTCGGACCGATGGATTAGCTGGCAGTAATAGTAATACGACACGCAAAGATCTTTGGGATTTCGAACCACATAGATGATCTTTGGGCGCACGTTGTCCATCTCGCGTGGATGAAGCTGCCAGGGTAGATGCGATTTGATGAACCGCCGTCCGGCCATCTGCTGAACACACTGCACTGAATCAATTTTTTTTTTGACGGCTAATCGGAAATAAGCAAGTCAATAACTCCGCATTAATATATGTCTCACCCGTTTTTGTCGATCTTATCCATATCCATAACTTACGTCACGGTGTCTTCCACACTGCGATCGTCGGAAAACATGGCCGAAAGCTCGAGCAAGGGTGTGCGGACTTGCTGTAATT]

[+] EMBL CNS08G80             [CTTATACCGATATTTTATTGCATACGTCATTCATAGTCAAACTCCAATCCACTGCCTTCAAAATGGTCCCTTATCCAGCCGTCGAATCGTGCAGACAATGCCGAGTCCATGTGATTTTTCCAATCGCCAATCTCGCCTTTGCGAATGAACTTCACTCCTGCATCATTCTGGATGATCGGTGAATCTTTCATCAGTGGCTCCAGATTAACGGCGGGGTTGCGCTGCATCCGTTCAAACTGCAGGTGATCACACATTGTTTGCACCTCCCCGTCGGTCAAGGCACGGCCAAATTCCAGAAATTCAGCACACTGTCTTATCACGGTCGGCAAGTTGCGCTTCATGTCCTCGTACTTCAAGAAAAGAATATTGCCCTGGTTGCGTCGCTTTCAGAAAGCCAGTGCATGGGCCCACATTGGCCCGATTGGGGCTTGGTCCGCCAGAAAGATGTCGCAGCACTCTTCGAACGTACCTTCGGACCGATGGATTAGCTGGCAGTAATAGTAATACGACACGCAAAGATCTTTGGGATTTCGAACCACATAGATGATCTTTGGGCGCACGTTGTCCATCTCGCGTGGATGAAGCTGCCAGGGTAGATGCGATTTGATGAACCGCCGTCCGGCCATCTGCTGAACACACTGCACTGAATCAATTTTTTTTTTGACGGCTAATCGGAAATAAGCAAGTCAATAACTCCGCATTAATATATGTCTCACCCGTTTTTGTCGATCTTATCCATATCCATAACTTACGTCACGGTGTCTTCCACACTGCGATCGTCGGAAAACATGGCCGAAAGCTCGAGCAAGGGTGTGCGGACTTGCTGTAATT]
[-] EMBL CNS08G7Z             [                                                                                                                                                                                                                                                                                                                                        AGTTGCGCTTCATGTCCTCGTACTTCAAGAAAAGAATATTGCCCTGGTTGCGTCGCTTCCAGAAAGCCAGTGCATGGGCCCACATTGGCCCGATTGGGGCTTGGTCCGCCAGAAAGATGTCGCAGCACTCTTCGAACGTA CTTCGGACCGATGGATTAGCTGGCAGTAATAGTAATACGACACAAAAAGATCTTTGGGATTTCGAACCACATAGATGATCTTTGGGCGCACGTTGTCCATCTCGCGTGGATGAAGCTGCCAGGGTAGATGCGATTTGATGAACCGCCGTCCGGCCATCTGCTGAACACACTGCACTGAATCAA TTTTTTCATGACGGCTAATCGGAAATAAGCAAGTCAATAACTCCGCATTAATATAT TTTCACCC                                                                                                                 ]


>consensus_4753#0 CTTATACCGATATTTTATTGCATACGTCATTCATAGTCAAACTCCAATCCACTGCCTTCA AAATGGTCCCTTATCCAGCCGTCGAATCGTGCAGACAATGCCGAGTCCATGTGATTTTTC CAATCGCCAATCTCGCCTTTGCGAATGAACTTCACTCCTGCATCATTCTGGATGATCGGT GAATCTTTCATCAGTGGCTCCAGATTAACGGCGGGGTTGCGCTGCATCCGTTCAAACTGC AGGTGATCACACATTGTTTGCACCTCCCCGTCGGTCAAGGCACGGCCAAATTCCAGAAAT TCAGCACACTGTCTTATCACGGTCGGCAAGTTGCGCTTCATGTCCTCGTACTTCAAGAAA AGAATATTGCCCTGGTTGCGTCGCTTTCAGAAAGCCAGTGCATGGGCCCACATTGGCCCG ATTGGGGCTTGGTCCGCCAGAAAGATGTCGCAGCACTCTTCGAACGTACCTTCGGACCGA TGGATTAGCTGGCAGTAATAGTAATACGACACGCAAAGATCTTTGGGATTTCGAACCACA TAGATGATCTTTGGGCGCACGTTGTCCATCTCGCGTGGATGAAGCTGCCAGGGTAGATGC GATTTGATGAACCGCCGTCCGGCCATCTGCTGAACACACTGCACTGAATCAATTTTTTTT TTGACGGCTAATCGGAAATAAGCAAGTCAATAACTCCGCATTAATATATGTCTCACCCGT TTTTGTCGATCTTATCCATATCCATAACTTACGTCACGGTGTCTTCCACACTGCGATCGT CGGAAAACATGGCCGAAAGCTCGAGCAAGGGTGTGCGGACTTGCTGTAATT



consensusID : consensus_4753#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 775
fasta sequence
                              [GTTGCGCTTCATGTCCTCGTACTTCAAGAAAAGAATATTGCCCTGGTTGCGTCGCTTCCAGAAAGCCAGTGCATGGGCCCACATTGGCCCGATTGGGGCTTGGTCCGCCAGAAAGATGTCGCAGCACTCTTCGAACGTACCTTCGGACCGATGGATTAGCTGGCAGTAATAGTAATACGACACGCAAAGATCTTTGGGATTTCGAACCACATAGATGATCTTTGGGCGCACGTTGTCCATCTCGCGTGGATGAAGCTGCCAGGGTAGATGCGATTTGATGAACCGCCGTCCGGCCATCTGCTGAACACACTGCACTGAATCAATTTTTTCATGACGGGTCACGGTGTCTTCCACACTGCGATCGTCGGAAAAGATGGCCGAAAGCTCGAGCAAGGGTGTGCGGACTTGCTGTAATTGATTGCGGGCTGCCTCATAGTCGAGATTGTTACCCAGCAGCCAAACCATCTCTTGAGCCCAGGTCGATCCAGCCCTTGGGAAAGACATTAGCCACACATCGTTTGAACGGATCGGCAAATCACGGATCGAATCGCCTATATCGGCGAATGCTTTCGGCATAACCACTCGACCCGGATTAACCTCGATGAAGTGATCCCGACGGCCAAAGAACGCTTCCAACCGTTCTCTAAACTCATCGCCGAGCGGATTGTACTCGAAGTTCATTCTGACACTAAACTTTTCGGACTTTATTAGGGTGCGAATAAGACTTGCGAGGACTAGATCCTGCGATCGAACACCACTAGCAATACTAGCAATC]

[-] EMBL BX625899             [GTTGCGCTTCATGTCCTCGTACTTCAAGAAAAGAATATTGCCCTGGTTGCGTCGCTTCCAGAAAGCCAGTGCATGGGCCCACATTGGCCCGATTGGGGCTTGGTCCGCCAGAAAGATGTCGCAGCACTCTTCGAACGTACCTTCGGACCGATGGATTAGCTGGCAGTAATAGTAATACGACACGCAAAGATCTTTGGGATTTCGAACCACATAGATGATCTTTGGGCGCACGTTGTCCATCTCGCGTGGATGAAGCTGCCAGGGTAGATGCGATTTGATGAACCGCCGTCCGGCCATCTGCTGAACACACTGCACTGAATCAATTTTTTCATGACGGGTCACGGTGTCTTCCACACTGCGATCGTCGGAAAAGATGGCCGAAAGCTCGAGCAAGGGTGTGCGGACTTGCTGTAATTGATTGCGGGCTGCCTCATAGTCGAGATTGTTACCCAGCAGCCAAACCATCTCTTGAGCCCAGGTCGATCCAGCCCTTGGGAAAGACATTAGCCACACATCGTTTGAACGGATCGGCAAATCACGGATCGAATCGCCTATATCGGCGAATGCTTTCGGCATAACCACTCGACCCGGATTAACCTCGATGAAGTGATCCCGACGGCCAAAGAACGCTTCCAACCGTTCTCTAAACTCATCGCCGAGCGGATTGTACTCGAAGTTCATTCTGACACTAAACTTTTCGGACTTTATTAGGGTGCGAATAAGACTTGCGAGGACTAGATCCTGCGATCGAACACCACTAGCAATACTAGCAATC]


>consensus_4753#1 GTTGCGCTTCATGTCCTCGTACTTCAAGAAAAGAATATTGCCCTGGTTGCGTCGCTTCCA GAAAGCCAGTGCATGGGCCCACATTGGCCCGATTGGGGCTTGGTCCGCCAGAAAGATGTC GCAGCACTCTTCGAACGTACCTTCGGACCGATGGATTAGCTGGCAGTAATAGTAATACGA CACGCAAAGATCTTTGGGATTTCGAACCACATAGATGATCTTTGGGCGCACGTTGTCCAT CTCGCGTGGATGAAGCTGCCAGGGTAGATGCGATTTGATGAACCGCCGTCCGGCCATCTG CTGAACACACTGCACTGAATCAATTTTTTCATGACGGGTCACGGTGTCTTCCACACTGCG ATCGTCGGAAAAGATGGCCGAAAGCTCGAGCAAGGGTGTGCGGACTTGCTGTAATTGATT GCGGGCTGCCTCATAGTCGAGATTGTTACCCAGCAGCCAAACCATCTCTTGAGCCCAGGT CGATCCAGCCCTTGGGAAAGACATTAGCCACACATCGTTTGAACGGATCGGCAAATCACG GATCGAATCGCCTATATCGGCGAATGCTTTCGGCATAACCACTCGACCCGGATTAACCTC GATGAAGTGATCCCGACGGCCAAAGAACGCTTCCAACCGTTCTCTAAACTCATCGCCGAG CGGATTGTACTCGAAGTTCATTCTGACACTAAACTTTTCGGACTTTATTAGGGTGCGAAT AAGACTTGCGAGGACTAGATCCTGCGATCGAACACCACTAGCAATACTAGCAATC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4753#0      CTTATACCGATATTTTATTGCATACGTCATTCATAGTCAAACTCCAATCCACTGCCTTCA 60
consensus_4753#1      ------------------------------------------------------------
                                                                                  

consensus_4753#0      AAATGGTCCCTTATCCAGCCGTCGAATCGTGCAGACAATGCCGAGTCCATGTGATTTTTC 120
consensus_4753#1      ------------------------------------------------------------
                                                                                  

consensus_4753#0      CAATCGCCAATCTCGCCTTTGCGAATGAACTTCACTCCTGCATCATTCTGGATGATCGGT 180
consensus_4753#1      ------------------------------------------------------------
                                                                                  

consensus_4753#0      GAATCTTTCATCAGTGGCTCCAGATTAACGGCGGGGTTGCGCTGCATCCGTTCAAACTGC 240
consensus_4753#1      ------------------------------------------------------------
                                                                                  

consensus_4753#0      AGGTGATCACACATTGTTTGCACCTCCCCGTCGGTCAAGGCACGGCCAAATTCCAGAAAT 300
consensus_4753#1      ------------------------------------------------------------
                                                                                  

consensus_4753#0      TCAGCACACTGTCTTATCACGGTCGGCAAGTTGCGCTTCATGTCCTCGTACTTCAAGAAA 360
consensus_4753#1      -----------------------------GTTGCGCTTCATGTCCTCGTACTTCAAGAAA 31
                                                   *******************************

consensus_4753#0      AGAATATTGCCCTGGTTGCGTCGCTTTCAGAAAGCCAGTGCATGGGCCCACATTGGCCCG 420
consensus_4753#1      AGAATATTGCCCTGGTTGCGTCGCTTCCAGAAAGCCAGTGCATGGGCCCACATTGGCCCG 91
                      ************************** *********************************

consensus_4753#0      ATTGGGGCTTGGTCCGCCAGAAAGATGTCGCAGCACTCTTCGAACGTACCTTCGGACCGA 480
consensus_4753#1      ATTGGGGCTTGGTCCGCCAGAAAGATGTCGCAGCACTCTTCGAACGTACCTTCGGACCGA 151
                      ************************************************************

consensus_4753#0      TGGATTAGCTGGCAGTAATAGTAATACGACACGCAAAGATCTTTGGGATTTCGAACCACA 540
consensus_4753#1      TGGATTAGCTGGCAGTAATAGTAATACGACACGCAAAGATCTTTGGGATTTCGAACCACA 211
                      ************************************************************

consensus_4753#0      TAGATGATCTTTGGGCGCACGTTGTCCATCTCGCGTGGATGAAGCTGCCAGGGTAGATGC 600
consensus_4753#1      TAGATGATCTTTGGGCGCACGTTGTCCATCTCGCGTGGATGAAGCTGCCAGGGTAGATGC 271
                      ************************************************************

consensus_4753#0      GATTTGATGAACCGCCGTCCGGCCATCTGCTGAACACACTGCACTGAATCAATTTTTTTT 660
consensus_4753#1      GATTTGATGAACCGCCGTCCGGCCATCTGCTGAACACACTGCACTGAATCAATTTTTTCA 331
                      **********************************************************  

consensus_4753#0      T------TGACGGC-------------TAATCGG-AAATAAGCAAGTCAATAACTCC-GC 699
consensus_4753#1      TGACGGGTCACGGTGTCTTCCACACTGCGATCGTCGGAAAAGATGGCCGAAAGCTCGAGC 391
                      *      * ****                ****    * ***   * * * * ***  **

consensus_4753#0      ATTAATATATGTCTCACCCGTTTTTGT---CGATCTTATCCATATCCATAACT--TAC-- 752
consensus_4753#1      AAGGGTGTGCGGACTTGCTGTAATTGATTGCGGGCTGCCTCATAGTCGAGATTGTTACCC 451
                      *    * *  *      * **  ***    **  **    ****  *   * *  ***  

consensus_4753#0      ----GTCACGGTGTCTTCCACACTGCGATCGTCGGAAAACATGGCCGAAAGCTCGAGCAA 808
consensus_4753#1      AGCAGCCAAACCATCTCTTGAGCCCAGGTCGATCCAGCCCTTGGGAAAGACATTAGCCAC 511
                          * **     ***      *   * ***    *   * ***   * *  *    ** 

consensus_4753#0      GGGT-GTGCGGACTTGCTG-TAATT----------------------------------- 831
consensus_4753#1      ACATCGTTTGAACGGATCGGCAAATCACGGATCGAATCGCCTATATCGGCGAATGCTTTC 571
                         * **  * **     *  ** *                                   

consensus_4753#0      ------------------------------------------------------------
consensus_4753#1      GGCATAACCACTCGACCCGGATTAACCTCGATGAAGTGATCCCGACGGCCAAAGAACGCT 631
                                                                                  

consensus_4753#0      ------------------------------------------------------------
consensus_4753#1      TCCAACCGTTCTCTAAACTCATCGCCGAGCGGATTGTACTCGAAGTTCATTCTGACACTA 691
                                                                                  

consensus_4753#0      ------------------------------------------------------------
consensus_4753#1      AACTTTTCGGACTTTATTAGGGTGCGAATAAGACTTGCGAGGACTAGATCCTGCGATCGA 751
                                                                                  

consensus_4753#0      ------------------------
consensus_4753#1      ACACCACTAGCAATACTAGCAATC 775
                                              




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)