These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4753#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 831 fasta sequence [CTTATACCGATATTTTATTGCATACGTCATTCATAGTCAAACTCCAATCCACTGCCTTCAAAATGGTCCCTTATCCAGCCGTCGAATCGTGCAGACAATGCCGAGTCCATGTGATTTTTCCAATCGCCAATCTCGCCTTTGCGAATGAACTTCACTCCTGCATCATTCTGGATGATCGGTGAATCTTTCATCAGTGGCTCCAGATTAACGGCGGGGTTGCGCTGCATCCGTTCAAACTGCAGGTGATCACACATTGTTTGCACCTCCCCGTCGGTCAAGGCACGGCCAAATTCCAGAAATTCAGCACACTGTCTTATCACGGTCGGCAAGTTGCGCTTCATGTCCTCGTACTTCAAGAAAAGAATATTGCCCTGGTTGCGTCGCTTTCAGAAAGCCAGTGCATGGGCCCACATTGGCCCGATTGGGGCTTGGTCCGCCAGAAAGATGTCGCAGCACTCTTCGAACGTACCTTCGGACCGATGGATTAGCTGGCAGTAATAGTAATACGACACGCAAAGATCTTTGGGATTTCGAACCACATAGATGATCTTTGGGCGCACGTTGTCCATCTCGCGTGGATGAAGCTGCCAGGGTAGATGCGATTTGATGAACCGCCGTCCGGCCATCTGCTGAACACACTGCACTGAATCAATTTTTTTTTTGACGGCTAATCGGAAATAAGCAAGTCAATAACTCCGCATTAATATATGTCTCACCCGTTTTTGTCGATCTTATCCATATCCATAACTTACGTCACGGTGTCTTCCACACTGCGATCGTCGGAAAACATGGCCGAAAGCTCGAGCAAGGGTGTGCGGACTTGCTGTAATT] [+] EMBL CNS08G80 [CTTATACCGATATTTTATTGCATACGTCATTCATAGTCAAACTCCAATCCACTGCCTTCAAAATGGTCCCTTATCCAGCCGTCGAATCGTGCAGACAATGCCGAGTCCATGTGATTTTTCCAATCGCCAATCTCGCCTTTGCGAATGAACTTCACTCCTGCATCATTCTGGATGATCGGTGAATCTTTCATCAGTGGCTCCAGATTAACGGCGGGGTTGCGCTGCATCCGTTCAAACTGCAGGTGATCACACATTGTTTGCACCTCCCCGTCGGTCAAGGCACGGCCAAATTCCAGAAATTCAGCACACTGTCTTATCACGGTCGGCAAGTTGCGCTTCATGTCCTCGTACTTCAAGAAAAGAATATTGCCCTGGTTGCGTCGCTTTCAGAAAGCCAGTGCATGGGCCCACATTGGCCCGATTGGGGCTTGGTCCGCCAGAAAGATGTCGCAGCACTCTTCGAACGTACCTTCGGACCGATGGATTAGCTGGCAGTAATAGTAATACGACACGCAAAGATCTTTGGGATTTCGAACCACATAGATGATCTTTGGGCGCACGTTGTCCATCTCGCGTGGATGAAGCTGCCAGGGTAGATGCGATTTGATGAACCGCCGTCCGGCCATCTGCTGAACACACTGCACTGAATCAATTTTTTTTTTGACGGCTAATCGGAAATAAGCAAGTCAATAACTCCGCATTAATATATGTCTCACCCGTTTTTGTCGATCTTATCCATATCCATAACTTACGTCACGGTGTCTTCCACACTGCGATCGTCGGAAAACATGGCCGAAAGCTCGAGCAAGGGTGTGCGGACTTGCTGTAATT] [-] EMBL CNS08G7Z [ AGTTGCGCTTCATGTCCTCGTACTTCAAGAAAAGAATATTGCCCTGGTTGCGTCGCTTCCAGAAAGCCAGTGCATGGGCCCACATTGGCCCGATTGGGGCTTGGTCCGCCAGAAAGATGTCGCAGCACTCTTCGAACGTA CTTCGGACCGATGGATTAGCTGGCAGTAATAGTAATACGACACAAAAAGATCTTTGGGATTTCGAACCACATAGATGATCTTTGGGCGCACGTTGTCCATCTCGCGTGGATGAAGCTGCCAGGGTAGATGCGATTTGATGAACCGCCGTCCGGCCATCTGCTGAACACACTGCACTGAATCAA TTTTTTCATGACGGCTAATCGGAAATAAGCAAGTCAATAACTCCGCATTAATATAT TTTCACCC ] consensusID : consensus_4753#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 775 fasta sequence [GTTGCGCTTCATGTCCTCGTACTTCAAGAAAAGAATATTGCCCTGGTTGCGTCGCTTCCAGAAAGCCAGTGCATGGGCCCACATTGGCCCGATTGGGGCTTGGTCCGCCAGAAAGATGTCGCAGCACTCTTCGAACGTACCTTCGGACCGATGGATTAGCTGGCAGTAATAGTAATACGACACGCAAAGATCTTTGGGATTTCGAACCACATAGATGATCTTTGGGCGCACGTTGTCCATCTCGCGTGGATGAAGCTGCCAGGGTAGATGCGATTTGATGAACCGCCGTCCGGCCATCTGCTGAACACACTGCACTGAATCAATTTTTTCATGACGGGTCACGGTGTCTTCCACACTGCGATCGTCGGAAAAGATGGCCGAAAGCTCGAGCAAGGGTGTGCGGACTTGCTGTAATTGATTGCGGGCTGCCTCATAGTCGAGATTGTTACCCAGCAGCCAAACCATCTCTTGAGCCCAGGTCGATCCAGCCCTTGGGAAAGACATTAGCCACACATCGTTTGAACGGATCGGCAAATCACGGATCGAATCGCCTATATCGGCGAATGCTTTCGGCATAACCACTCGACCCGGATTAACCTCGATGAAGTGATCCCGACGGCCAAAGAACGCTTCCAACCGTTCTCTAAACTCATCGCCGAGCGGATTGTACTCGAAGTTCATTCTGACACTAAACTTTTCGGACTTTATTAGGGTGCGAATAAGACTTGCGAGGACTAGATCCTGCGATCGAACACCACTAGCAATACTAGCAATC] [-] EMBL BX625899 [GTTGCGCTTCATGTCCTCGTACTTCAAGAAAAGAATATTGCCCTGGTTGCGTCGCTTCCAGAAAGCCAGTGCATGGGCCCACATTGGCCCGATTGGGGCTTGGTCCGCCAGAAAGATGTCGCAGCACTCTTCGAACGTACCTTCGGACCGATGGATTAGCTGGCAGTAATAGTAATACGACACGCAAAGATCTTTGGGATTTCGAACCACATAGATGATCTTTGGGCGCACGTTGTCCATCTCGCGTGGATGAAGCTGCCAGGGTAGATGCGATTTGATGAACCGCCGTCCGGCCATCTGCTGAACACACTGCACTGAATCAATTTTTTCATGACGGGTCACGGTGTCTTCCACACTGCGATCGTCGGAAAAGATGGCCGAAAGCTCGAGCAAGGGTGTGCGGACTTGCTGTAATTGATTGCGGGCTGCCTCATAGTCGAGATTGTTACCCAGCAGCCAAACCATCTCTTGAGCCCAGGTCGATCCAGCCCTTGGGAAAGACATTAGCCACACATCGTTTGAACGGATCGGCAAATCACGGATCGAATCGCCTATATCGGCGAATGCTTTCGGCATAACCACTCGACCCGGATTAACCTCGATGAAGTGATCCCGACGGCCAAAGAACGCTTCCAACCGTTCTCTAAACTCATCGCCGAGCGGATTGTACTCGAAGTTCATTCTGACACTAAACTTTTCGGACTTTATTAGGGTGCGAATAAGACTTGCGAGGACTAGATCCTGCGATCGAACACCACTAGCAATACTAGCAATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4753#0 CTTATACCGATATTTTATTGCATACGTCATTCATAGTCAAACTCCAATCCACTGCCTTCA 60 consensus_4753#1 ------------------------------------------------------------ consensus_4753#0 AAATGGTCCCTTATCCAGCCGTCGAATCGTGCAGACAATGCCGAGTCCATGTGATTTTTC 120 consensus_4753#1 ------------------------------------------------------------ consensus_4753#0 CAATCGCCAATCTCGCCTTTGCGAATGAACTTCACTCCTGCATCATTCTGGATGATCGGT 180 consensus_4753#1 ------------------------------------------------------------ consensus_4753#0 GAATCTTTCATCAGTGGCTCCAGATTAACGGCGGGGTTGCGCTGCATCCGTTCAAACTGC 240 consensus_4753#1 ------------------------------------------------------------ consensus_4753#0 AGGTGATCACACATTGTTTGCACCTCCCCGTCGGTCAAGGCACGGCCAAATTCCAGAAAT 300 consensus_4753#1 ------------------------------------------------------------ consensus_4753#0 TCAGCACACTGTCTTATCACGGTCGGCAAGTTGCGCTTCATGTCCTCGTACTTCAAGAAA 360 consensus_4753#1 -----------------------------GTTGCGCTTCATGTCCTCGTACTTCAAGAAA 31 ******************************* consensus_4753#0 AGAATATTGCCCTGGTTGCGTCGCTTTCAGAAAGCCAGTGCATGGGCCCACATTGGCCCG 420 consensus_4753#1 AGAATATTGCCCTGGTTGCGTCGCTTCCAGAAAGCCAGTGCATGGGCCCACATTGGCCCG 91 ************************** ********************************* consensus_4753#0 ATTGGGGCTTGGTCCGCCAGAAAGATGTCGCAGCACTCTTCGAACGTACCTTCGGACCGA 480 consensus_4753#1 ATTGGGGCTTGGTCCGCCAGAAAGATGTCGCAGCACTCTTCGAACGTACCTTCGGACCGA 151 ************************************************************ consensus_4753#0 TGGATTAGCTGGCAGTAATAGTAATACGACACGCAAAGATCTTTGGGATTTCGAACCACA 540 consensus_4753#1 TGGATTAGCTGGCAGTAATAGTAATACGACACGCAAAGATCTTTGGGATTTCGAACCACA 211 ************************************************************ consensus_4753#0 TAGATGATCTTTGGGCGCACGTTGTCCATCTCGCGTGGATGAAGCTGCCAGGGTAGATGC 600 consensus_4753#1 TAGATGATCTTTGGGCGCACGTTGTCCATCTCGCGTGGATGAAGCTGCCAGGGTAGATGC 271 ************************************************************ consensus_4753#0 GATTTGATGAACCGCCGTCCGGCCATCTGCTGAACACACTGCACTGAATCAATTTTTTTT 660 consensus_4753#1 GATTTGATGAACCGCCGTCCGGCCATCTGCTGAACACACTGCACTGAATCAATTTTTTCA 331 ********************************************************** consensus_4753#0 T------TGACGGC-------------TAATCGG-AAATAAGCAAGTCAATAACTCC-GC 699 consensus_4753#1 TGACGGGTCACGGTGTCTTCCACACTGCGATCGTCGGAAAAGATGGCCGAAAGCTCGAGC 391 * * **** **** * *** * * * * *** ** consensus_4753#0 ATTAATATATGTCTCACCCGTTTTTGT---CGATCTTATCCATATCCATAACT--TAC-- 752 consensus_4753#1 AAGGGTGTGCGGACTTGCTGTAATTGATTGCGGGCTGCCTCATAGTCGAGATTGTTACCC 451 * * * * * ** *** ** ** **** * * * *** consensus_4753#0 ----GTCACGGTGTCTTCCACACTGCGATCGTCGGAAAACATGGCCGAAAGCTCGAGCAA 808 consensus_4753#1 AGCAGCCAAACCATCTCTTGAGCCCAGGTCGATCCAGCCCTTGGGAAAGACATTAGCCAC 511 * ** *** * * *** * * *** * * * ** consensus_4753#0 GGGT-GTGCGGACTTGCTG-TAATT----------------------------------- 831 consensus_4753#1 ACATCGTTTGAACGGATCGGCAAATCACGGATCGAATCGCCTATATCGGCGAATGCTTTC 571 * ** * ** * ** * consensus_4753#0 ------------------------------------------------------------ consensus_4753#1 GGCATAACCACTCGACCCGGATTAACCTCGATGAAGTGATCCCGACGGCCAAAGAACGCT 631 consensus_4753#0 ------------------------------------------------------------ consensus_4753#1 TCCAACCGTTCTCTAAACTCATCGCCGAGCGGATTGTACTCGAAGTTCATTCTGACACTA 691 consensus_4753#0 ------------------------------------------------------------ consensus_4753#1 AACTTTTCGGACTTTATTAGGGTGCGAATAAGACTTGCGAGGACTAGATCCTGCGATCGA 751 consensus_4753#0 ------------------------ consensus_4753#1 ACACCACTAGCAATACTAGCAATC 775 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||