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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4761#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 828 fasta sequence
[GCCAGATCGCCACGAGGTCTAGTATCAGTATGGTCGGAGAAACGTGAATTACGTTTGGAATCTGAGAAATTGTGCCTTTCGCAAGATGATTTAAGCATAATTTGGAACAATTACTGGTCGTTTGAAAGCAATAAAGAAGCACAAGCCGAAAATTTGTTCCCAGTTGCTAAATTTACGGCCCAGCTACGACAATTCACAACAAATCGGGCCGGATATCTTGGAGACCATTTCATACTCGAATTGTCAACTGAACAATGCGACACTCGTTTACCATTGTTTTTAAAAGCTGCACCATCGTCTATACCGGCCCTTACTCGTTACCTGCAAGCAATAGGCACATCTCGCAAGGAGTCAAGAGTGTATGGCGAACTGTTCCCGAAGCTCCGAATCTATTCGCGCTTTGCACCGAATTGTTACTTTTCCGATAGAGGCAAGGGTACTGTGTTGGTGCTGGGAAAACTTAAAAACACAAGGATTCGAAACTATTCCCAGTGACGCTACAAGAACGTTTGATGAAGAGCATATAAAGTGCGCACTTGACTGCCTTGGCAAGATTCCATTCGGCAACAATTCTGTGGAGGAAAGAGACGGGAACAAGTGTACCGATTGCAAGTTTCCGGGGGGTTTGGTTTGGAAAGAAAACATGCTTTGGGATTTAACGAAGGGGATAATTAATTCCCAAGAAATTAGAGGGAACTCCAACCATTTGCCGATCCGATATTTTGGCTCGACATTTTGTGCGAAATCATTCGAAGATGGACACCCCACGGGTTGGATACCGAATCTGCAAAAANTACCCTCCNTGTAATGCAGATCTACAAGCTNTTA]
[+] EMBL BX466606 [GCCAGATCGCCACGAGGTCTAGTATCAGTATGGTCGGAGAAACGTGAATTACGTTTGGAATCTGAGAAATTGTGCCTTTCGCAAGATGATTTAAGCATAATTTGGAACAATTACTGGTCGTTTGAAAGCAATAAAGAAGCACAAGCCGAAAATTTGTTCCCAGTTGCTAAATTTACGGCCCAGCTACGACAATTCACAACAAATCGGGCCGGATATCTTGGAGACCATTTCATACTCGAATTGTCAACTGAACAATGCGACACTCGTTTACCATTGTTTTTAAAAGCTGCACCATCGTCTATACCGGCCCTTACTCGTTACCTGCAAGCAATAGGCACATCTCGCAAGGAGTCAAGAGTGTATGGCGAACTGTTCCCGAAGCTCCGAATCTATTCGCGCTTTGCACCGAATTGTTACTTTTCCGATAGAGGCAAGGGTACTGTGTTGGTGCTGGGAAAACTTAAAAACACAAGGATTCGAAACTATTCCCAGTGACGCTACAAGAACGTTTGATGAAGAGCATATAAAGTGCGCACTTGACTGCCTTGGCAAGATTCCATTCGGCAACAATTCTGTGGAGGAAAGAGACGGGAACAAGTGTACCGATTGCAAGTTTCCGGGGGGTTTGGTTTGGAAAGAAAACATGCTTTGGGATTTAACGAAGGGGATAATTAATTCCCAAGAAATTAGAGGGAACTCCAACCATTTGCCGATCCGATATTTTGGCTCGACATTTTGTGCGAAATCATTCGAAGATGGACACCCCACGGGTTGGATACCGAATCTGCAAAAANTACCCTCCNTGTAATGCAGATCTACAAGCTNTTA]
consensusID : consensus_4761#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence
[CCGGGAGAAAGTGAATTACGTCTGGAATCTGAGAAATTGTGCTTTTCGCAAGATGATTTAAACGTAATTTGGAACAATTACTGGTCGTTTGAAAGCAACAAAGAAGCACAAGCCGAAAATGTGTTCCCAGCTGCTAAAGTTACAGCCCAGCTACGACAATTCACAACAAATCGGGCCGGATATCTTGGAGACCATTTCATACTCGAATTGTCAACCGAACAATGCGACACTCGTTTAGCATTGTTTTTAAAAGCTGCCCCATCGTCTATACCGGCCCTTACTCGTTACCTGCAAGCAATAGGCACATCTCGCAAGGAGTCAAGAGTGTATGGCGAACTGTTCCCGAAGCTCAGAATCTATTCGCGCTTTGCACCGAATTGTTACTTTTCTGATACAGGCAAGGGGAATGTGTTGGTGCTGGAAAACTTAAAAACACAAGGATTCGAAACTATTCCCAGTGACGCTACAAGAACGTTTGATGAAGAGCATATAAAGTGCGCACTTGCTGCCTTGGCAAGATTCCATTCGGCAACTATTCTGTTGGAAAAAGAGACGGGAACAAGTGTACCGCTGCAATTTCCGGGGTTGTTGGAAGAAAATGCTTGGATTAGAAGGGATAATAATCCAAGAATAGAGGAACTCAACGTTGCCGTCGATATTTTGCTCGCATTTGTGCGAATCATCGA]
[+] EMBL BM627282 [CCGGGAGAAAGTGAATTACGTCTGGAATCTGAGAAATTGTGCTTTTCGCAAGATGATTTAAACGTAATTTGGAACAATTACTGGTCGTTTGAAAGCAACAAAGAAGCACAAGCCGAAAATGTGTTCCCAGCTGCTAAAGTTACAGCCCAGCTACGACAATTCACAACAAATCGGGCCGGATATCTTGGAGACCATTTCATACTCGAATTGTCAACCGAACAATGCGACACTCGTTTAGCATTGTTTTTAAAAGCTGCCCCATCGTCTATACCGGCCCTTACTCGTTACCTGCAAGCAATAGGCACATCTCGCAAGGAGTCAAGAGTGTATGGCGAACTGTTCCCGAAGCTCAGAATCTATTCGCGCTTTGCACCGAATTGTTACTTTTCTGATACAGGCAAGGGGAATGTGTTGGTGCTGGAAAACTTAAAAACACAAGGATTCGAAACTATTCCCAGTGACGCTACAAGAACGTTTGATGAAGAGCATATAAAGTGCGCACTTGCTGCCTTGGCAAGATTCCATTCGGCAACTATTCTGTTGGAAAAAGAGACGGGAACAAGTGTACCGCTGCAATTTCCGGGGTTGTTGGAAGAAAATGCTTGGATTAGAAGGGATAATAATCCAAGAATAGAGGAACTCAACGTTGCCGTCGATATTTTGCTCGCATTTGTGCGAATCATCGA]
consensusID : consensus_4761#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence
[AGAATNGCCGAGGTNGGCCTTATCGTTACTGCAAGCAATAGGCACATCTCGCAAGGAGTCAAGAGTGTATGGCGAACTGTTCCCGAAGCTCCGAATCTATTCGCGCTTTGCACCGAATTGTTACTTTTCTGATACAGGCAAGGGGAACTGTGTTTGGTGCTGGAAAACTTAAAAACACAAGGATTCGAAACTATTCCCAGTGACGCTACAAGAACGTTTTGACTGAACGAGCATATAAAGTGCGCACTTGCTGCCTTGGCAAGATTCCATTCGGCAACCATTCTGTTTGGAAAAAGAGACGGGAACAAGTGTACCGCTGCAATTTCCGGGGTTGTCTGGAAGAAAATGCTTGGATTAGAAGGGATAATAATCCAAGAATAGAGGAACTCAACATTGCCGTCGATATTTTGCTCGCGTTTTGTGCGAATCATCGAAAATGATAACCCACAGTTGATAACGATACTGCAAAAACTACCCTCGTTGTGATGCAGATCTACGAGCTTGTTAAGCCTTCCAGCAAGTTTAAAAACGTCGCATGCCATGGTGATCTCTGGGCTAGCAATATGAT]
[+] EMBL AL931975 [AGAATNGCCGAGGTNGGCCTTATCGTTACTGCAAGCAATAGGCACATCTCGCAAGGAGTCAAGAGTGTATGGCGAACTGTTCCCGAAGCTCCGAATCTATTCGCGCTTTGCACCGAATTGTTACTTTTCTGATACAGGCAAGGGGAACTGTGTTTGGTGCTGGAAAACTTAAAAACACAAGGATTCGAAACTATTCCCAGTGACGCTACAAGAACGTTTTGACTGAACGAGCATATAAAGTGCGCACTTGCTGCCTTGGCAAGATTCCATTCGGCAACCATTCTGTTTGGAAAAAGAGACGGGAACAAGTGTACCGCTGCAATTTCCGGGGTTGTCTGGAAGAAAATGCTTGGATTAGAAGGGATAATAATCCAAGAATAGAGGAACTCAACATTGCCGTCGATATTTTGCTCGCGTTTTGTGCGAATCATCGAAAATGATAACCCACAGTTGATAACGATACTGCAAAAACTACCCTCGTTGTGATGCAGATCTACGAGCTTGTTAAGCCTTCCAGCAAGTTTAAAAACGTCGCATGCCATGGTGATCTCTGGGCTAGCAATATGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4761#0 GCCAGATCGCCACGAGGTCTAGTATCAGTATGGTCGGAGAAACGTGAATTACGTTTGGAA 60
consensus_4761#1 ---------------------------------CCGGGAGAAAGTGAATTACGTCTGGAA 27
consensus_4761#2 ------------------------------------------------------------
consensus_4761#0 TCTGAGAAATTGTGCCTTTCGCAAGATGATTTAAGCATAATTTGGAACAATTACTGGTCG 120
consensus_4761#1 TCTGAGAAATTGTGCTTTTCGCAAGATGATTTAAACGTAATTTGGAACAATTACTGGTCG 87
consensus_4761#2 ------------------------------------------------------------
consensus_4761#0 TTTGAAAGCAATAAAGAAGCACAAGCCGAAAATTTGTTCCCAGTTGCTAAATTTACGGCC 180
consensus_4761#1 TTTGAAAGCAACAAAGAAGCACAAGCCGAAAATGTGTTCCCAGCTGCTAAAGTTACAGCC 147
consensus_4761#2 ------------------------------------------------------------
consensus_4761#0 CAGCTACGACAATTCACAACAAATCGGGCCGGATATCTTGGAGACCATTTCATACTCGAA 240
consensus_4761#1 CAGCTACGACAATTCACAACAAATCGGGCCGGATATCTTGGAGACCATTTCATACTCGAA 207
consensus_4761#2 ------------------------------------------------------------
consensus_4761#0 TTGTCAACTGAACAATGCGACACTCGTTTACCATTGTTTTTAAAAGCTGCACCATCGTCT 300
consensus_4761#1 TTGTCAACCGAACAATGCGACACTCGTTTAGCATTGTTTTTAAAAGCTGCCCCATCGTCT 267
consensus_4761#2 --------------------------------------------------AGAATNGCCG 10
** * *
consensus_4761#0 ATACCGGCCCTTACTCGTTACCTGCAAGCAATAGGCACATCTCGCAAGGAGTCAAGAGTG 360
consensus_4761#1 ATACCGGCCCTTACTCGTTACCTGCAAGCAATAGGCACATCTCGCAAGGAGTCAAGAGTG 327
consensus_4761#2 AGGTNGGCCTT--ATCGTTAC-TGCAAGCAATAGGCACATCTCGCAAGGAGTCAAGAGTG 67
* **** * ******* **************************************
consensus_4761#0 TATGGCGAACTGTTCCCGAAGCTCCGAATCTATTCGCGCTTTGCACCGAATTGTTACTTT 420
consensus_4761#1 TATGGCGAACTGTTCCCGAAGCTCAGAATCTATTCGCGCTTTGCACCGAATTGTTACTTT 387
consensus_4761#2 TATGGCGAACTGTTCCCGAAGCTCCGAATCTATTCGCGCTTTGCACCGAATTGTTACTTT 127
************************ ***********************************
consensus_4761#0 TCCGATAGAGGCAAGGGTAC-TGTGTT-GGTGCTGGGAAAACTTAAAAACACAAGGATTC 478
consensus_4761#1 TCTGATACAGGCAAGGGGAA-TGTGTT-GGTGCTGG-AAAACTTAAAAACACAAGGATTC 444
consensus_4761#2 TCTGATACAGGCAAGGGGAACTGTGTTTGGTGCTGG-AAAACTTAAAAACACAAGGATTC 186
** **** ********* * ****** ******** ***********************
consensus_4761#0 GAAACTATTCCCAGTGACGCTACAAGAACGTTTGA--TGAA-GAGCATATAAAGTGCGCA 535
consensus_4761#1 GAAACTATTCCCAGTGACGCTACAAGAACGTTTGA--TGAA-GAGCATATAAAGTGCGCA 501
consensus_4761#2 GAAACTATTCCCAGTGACGCTACAAGAACGTTTTGACTGAACGAGCATATAAAGTGCGCA 246
********************************* **** ******************
consensus_4761#0 CTTGACTGCCTTGGCAAGATTCCATTCGGCAACAATTCTGTG-GAGGAAAGAGACGGGAA 594
consensus_4761#1 CTTG-CTGCCTTGGCAAGATTCCATTCGGCAACTATTCTGTT-GGAAAAAGAGACGGGAA 559
consensus_4761#2 CTTG-CTGCCTTGGCAAGATTCCATTCGGCAACCATTCTGTTTGGAAAAAGAGACGGGAA 305
**** **************************** ******* * *************
consensus_4761#0 CAAGTGTACCGATTGCAAGTTTCCGGGGGGTTTGGTTTGGAAAGAAAACATGCTTTGGGA 654
consensus_4761#1 CAAGTGTACCG-CTGCAA-TTTCCGGGG---TTG--TTGGAAGAAAA---TGCTT--GGA 607
consensus_4761#2 CAAGTGTACCG-CTGCAA-TTTCCGGGG---TTG-TCTGGAAGAAAA---TGCTT--GGA 354
*********** ***** ********* *** ***** *** ***** ***
consensus_4761#0 TTTAACGAAGGGGATAATTAATTCCCAAGAAATTAGAGGGAACTCCAACCATTTGCCGAT 714
consensus_4761#1 TT----AGAAGGGATAATAA---TCCAAGAA--TAGAGGAA--CTCAACG--TTGCCG-- 652
consensus_4761#2 TT----AGAAGGGATAATAA---TCCAAGAA--TAGAGGAA--CTCAACA--TTGCCG-- 399
** * ******** * ******* ****** * **** ******
consensus_4761#0 CCGATATTTTGGCTCGACATTTTGTGCGAAATCATTCGAAGATGGACACCCCACGGGTTG 774
consensus_4761#1 TCGATATTTTG-CTCG-CATTT-GTGCGAA-TCAT-CGA--------------------- 686
consensus_4761#2 TCGATATTTTG-CTCG-CGTTTTGTGCGAA-TCAT-CGAAAATGATAACCCACAG---TT 452
********** **** * *** ******* **** ***
consensus_4761#0 GATACCGAATCTGCAAAAANTACCCTCCNTGTAATGCAGATCTACAAGCTNTTA------ 828
consensus_4761#1 ------------------------------------------------------------
consensus_4761#2 GATAACGATACTGCAAAAACTACCCTCGTTGTGATGCAGATCTACGAGCTTGTTAAGCCT 512
consensus_4761#0 --------------------------------------------------------
consensus_4761#1 --------------------------------------------------------
consensus_4761#2 TCCAGCAAGTTTAAAAACGTCGCATGCCATGGTGATCTCTGGGCTAGCAATATGAT 568
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||