These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4769#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1159 fasta sequence [CCGAAGCGTCATCGTCAGCAGCAGCAGCAGCATCGGTGTAAAAGTGGATGCATCGTGCTGAGCTGACAAGAGAAGCAGTACTTTACATTAACGCTAACACGCCCTAATCGCGGCCGTTGTAGTTCATCACGAAGAGCGGGCGCAGATACGTTGTGACGACAGCAGACGACGACGACGTGGTCGCTTCCGGTCGCGAGCAGCAAAGACGCGAGCGTGTGTGTGTGCGTGTGTGTACCGGGGGGGAGGGTATTGTGCTTGCGGTGTAATTGCGTTGGGTGAGGAACAAGCGTAACGAGTCGCCAGCTGGGTATAAAGGGGGAAAGCAACCGCATCCAAGATGGCACCGGTACGTGGGGATGGAATGCGCGGACTGGCCGTGTTCATATCGGACATCAGGAACTGCAAAAGCAAAGAGGCGGAAATCAAGCGCATCAACAAGGAGCTGGCCAACATTCGGAGCAAATTCAAAGGGGACAAAACGCTGGACGGCTACCAAGAAGAAGAAGTACGTGTGCAAGCTGCTGTTCATCTTTCTGCTCGGCCATGACATCGATTTCGGCCACCATGGAGGCGGTCAATCTGCTGTCCTCCAACAAATACTCGGAGAAACAAATCGGCTATCTGTTCATCTCCGGTGCTGGTGAACACGAACAGCGATCTGATCAAGCTGATCATCCAAAGCATCAAGAACGATCTGCAGTCGCGCAATCCGATCCACGTCAATCTGGCGCTGCAGTGCATCGCCAACATCGGCAGCCAGGATATGGCGGAAGCGTTCTCGAACGAAATCCCGAAGCTGCTCGTGTCGGGCGACACGATGGACGTGGTGAAGCAGTCGGCCGCGCTGTGCCTGCTGCGGCTGTTCCGCACCTGCCCGGACATCATCCCGGGCGGCGAGTGGACCAGCCGGATCATCCATCTGCTGAACGATCAGCATATGGGCGTGGTGACGGCGGCGACCAGCCTGATCGATGCGCTGGTCAAGAAAAACCCGGAAGAGTACAAGGGCTGCGTCAGCTTGGCCGTGTCGCGCCTGTCCCGCATCGTGACCGCTTCGTACACGGATCTGCAGGACTACACGTACTACTTTGTGCCGGCGCCGTGGCTGTCGGTGAAGCTGCTGCGCCTGCTGCAGAACTACAACCCGCCGACGGAGGAT] [+] EMBL BM576846 [CCGAAGCGTCATCGTCAGCAGCAGCAGCAGCATCGGTGTAAAAGTGGATGCATCGTGCTGAGCTGACAAGAGAAGCAGTACTTTACATTAACGCTAACACGCCCTAATCGCGGCCGTTGTAGTTCATCACGAAGAGCGGGCGCAGATACGTTGTGACGACAGCAGACGACGACGACGTGGTCGCTTCCGGTCGCGAGCAGCAAAGACGCGAGCGTGTGTGTGTGCGTGTGTGTACCGGGGGGGAGGGTATTGTGCTTGCGGTGTAATTGCGTTGGGTGAGGAACAAGCGTAACGAGTCGCCAGCTGGGTATAAAGGGGGAAAGCAACCGCATCCAAGATGGCACCGGTACGTGGGGATGGAATGCGCGGACTGGCCGTGTTCATATCGGACATCAGGAACTGCAAAAGCAAAGAGGCGGAAATCAAGCGCATCAACAAGGAGCTGGCCAACATTCGGAGCAAATTCAAAGGGGACAAAACGCTGGACGGCTACCAAGAAGAAGAAGTACGTGTGCAAGCTGCTGTTCATCTTTCTGCTCGGCCATGACATCGATTTCGGCCACCATGGAGGCGGTCAATCTGCTGTCCTCCAACAAATACTCGGAGAAACAAATCGGCTATCTGTTCATCTCCGGTGCTGGTGAACACGAACAGCGATCTGATCAAGCTGATCATCCAA ] [+] EMBL BM599520 [ ccGCTGCTGTTCATCTTTCTGCTCGGCCATGACATCGATTTCGGCCA CATGGAGGCGGTCAATCTGCTGTCCTCCAACAAATACTCGGAGAAACAAATCGGCTATCTGTTCATCT CGGTGCTGGTGAACACGAACAGCGATCTGATCAAGCTGATCATCCAAAGCATCAAGAACGATCTGCAGTCGCGCAATCCGATCCACGTCAATCTGGCGCTGCAGTGCATCGCCAACATCGGCAGCCAGGATATGGCGGAAGCGTTCTCGAACGAAATCCCGAAGCTGCTCGTGTCGGGCGACACGATGGACGTGGTGAAGCAGTCGGCCGCGCTGTGCCTGCTGCGGCTGTTCCGCACCTGCCCGGACATCATCCCGGGCGGCGAGTGGACCAGCCGGATCATCCATCTGCTGAACGATCAGCATATGGGCGTGGTGACGGCGGCGACCAGCCTGATCGATGCGCTGGTCAAGAAAAACCCGGAAGAGTACAAGGGCTGCGTCAGCTTGGCCGTGTCGCGCCTGTCCCGCATCGTGACCGCTTCGTACACGGATCTGCAGGACTACACGTACTACTTTGTGCCGGCGCCGTGGCTGTCGGTGAAGCTGCTGCGCCTGCTGCAGAACTACAACCCGCCGACGGAGGAT] consensusID : consensus_4769#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [CCGCCCACGCGTCCGATCGGCTATCTGTTCATCTCGGTGCTGGTGAACACGAACAGCGATCTGATCAAGCTGATCATCCAAAGCATCAAGAACGATCTGCAGTCGCGCAATCCGATCCACGTCAATCTGGCGCTGCAGTGCATCGCCAACATCGGCAGCCAGGATATGGCGGAAGCGTTCTCGAACGAAATCCCGAAGCTGCTCGTGTCGGGCGACACGATGGACGTGGTGAAGCAGTCGGCCGCGCTGTGCCTGCTGCGGCTGTTCCGCACCTGCCCGGACATCATCCCGGGCGGCGAGTGGACCAGCCGGATCATCCATCTGCTGAACGATCAGCATATGGGCGTGGTGACGGCGGCGACCAGCCTGATCGATGCGCTGGTCAAGAAAAACCCGGAAGAGTACAAGGGCTGCGTCAGCTTGGCCGTGTCGCGCCTGTCCCGCATCGTGACCGCTTCGTACACGGATCTGCAGGACTACACGTACTACTTTGTGCCGGCGCCGTGGCTGTCGGTGAAGCTGCTGCGCCTGCTGCAGAACTACAACCCGCCGACGGAGGATCCGGGCGTGCGCGGTCGGCTGAACGAGTGTCTGGAGACGATACTGAACAAGG] [+] EMBL BM614811 [CCGCCCACGCGTCCGATCGGCTATCTGTTCATCTCGGTGCTGGTGAACACGAACAGCGATCTGATCAAGCTGATCATCCAAAGCATCAAGAACGATCTGCAGTCGCGCAATCCGATCCACGTCAATCTGGCGCTGCAGTGCATCGCCAACATCGGCAGCCAGGATATGGCGGAAGCGTTCTCGAACGAAATCCCGAAGCTGCTCGTGTCGGGCGACACGATGGACGTGGTGAAGCAGTCGGCCGCGCTGTGCCTGCTGCGGCTGTTCCGCACCTGCCCGGACATCATCCCGGGCGGCGAGTGGACCAGCCGGATCATCCATCTGCTGAACGATCAGCATATGGGCGTGGTGACGGCGGCGACCAGCCTGATCGATGCGCTGGTCAAGAAAAACCCGGAAGAGTACAAGGGCTGCGTCAGCTTGGCCGTGTCGCGCCTGTCCCGCATCGTGACCGCTTCGTACACGGATCTGCAGGACTACACGTACTACTTTGTGCCGGCGCCGTGGCTGTCGGTGAAGCTGCTGCGCCTGCTGCAGAACTACAACCCGCCGACGGAGGATCCGGGCGTGCGCGGTCGGCTGAACGAGTGTCTGGAGACGATACTGAACAAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4769#0 CCGAAGCGTCATCGTCAGCAGCAGCAGCAGCATCGGTGTAAAAGTGGATGCATCGTGCTG 60 consensus_4769#1 ------------------------------------------------------------ consensus_4769#0 AGCTGACAAGAGAAGCAGTACTTTACATTAACGCTAACACGCCCTAATCGCGGCCGTTGT 120 consensus_4769#1 ------------------------------------------------------------ consensus_4769#0 AGTTCATCACGAAGAGCGGGCGCAGATACGTTGTGACGACAGCAGACGACGACGACGTGG 180 consensus_4769#1 ------------------------------------------------------------ consensus_4769#0 TCGCTTCCGGTCGCGAGCAGCAAAGACGCGAGCGTGTGTGTGTGCGTGTGTGTACCGGGG 240 consensus_4769#1 ------------------------------------------------------------ consensus_4769#0 GGGAGGGTATTGTGCTTGCGGTGTAATTGCGTTGGGTGAGGAACAAGCGTAACGAGTCGC 300 consensus_4769#1 ------------------------------------------------------------ consensus_4769#0 CAGCTGGGTATAAAGGGGGAAAGCAACCGCATCCAAGATGGCACCGGTACGTGGGGATGG 360 consensus_4769#1 ------------------------------------------------------------ consensus_4769#0 AATGCGCGGACTGGCCGTGTTCATATCGGACATCAGGAACTGCAAAAGCAAAGAGGCGGA 420 consensus_4769#1 ------------------------------------------------------------ consensus_4769#0 AATCAAGCGCATCAACAAGGAGCTGGCCAACATTCGGAGCAAATTCAAAGGGGACAAAAC 480 consensus_4769#1 ------------------------------------------------------------ consensus_4769#0 GCTGGACGGCTACCAAGAAGAAGAAGTACGTGTGCAAGCTGCTGTTCATCTTTCTGCTCG 540 consensus_4769#1 ------------------------------------------------------------ consensus_4769#0 GCCATGACATCGATTTCGGCCACCATGGAGGCGGTCAATCTGCTGTCCTCCAACAAATAC 600 consensus_4769#1 ---------------------------------------------------------CCG 3 consensus_4769#0 TCGGAGAAACAAATCGGCTATCTGTTCATCTCCGGTGCTGGTGAACACGAACAGCGATCT 660 consensus_4769#1 CCCACGCGTCCGATCGGCTATCTGTTCATCTC-GGTGCTGGTGAACACGAACAGCGATCT 62 * * * ******************** *************************** consensus_4769#0 GATCAAGCTGATCATCCAAAGCATCAAGAACGATCTGCAGTCGCGCAATCCGATCCACGT 720 consensus_4769#1 GATCAAGCTGATCATCCAAAGCATCAAGAACGATCTGCAGTCGCGCAATCCGATCCACGT 122 ************************************************************ consensus_4769#0 CAATCTGGCGCTGCAGTGCATCGCCAACATCGGCAGCCAGGATATGGCGGAAGCGTTCTC 780 consensus_4769#1 CAATCTGGCGCTGCAGTGCATCGCCAACATCGGCAGCCAGGATATGGCGGAAGCGTTCTC 182 ************************************************************ consensus_4769#0 GAACGAAATCCCGAAGCTGCTCGTGTCGGGCGACACGATGGACGTGGTGAAGCAGTCGGC 840 consensus_4769#1 GAACGAAATCCCGAAGCTGCTCGTGTCGGGCGACACGATGGACGTGGTGAAGCAGTCGGC 242 ************************************************************ consensus_4769#0 CGCGCTGTGCCTGCTGCGGCTGTTCCGCACCTGCCCGGACATCATCCCGGGCGGCGAGTG 900 consensus_4769#1 CGCGCTGTGCCTGCTGCGGCTGTTCCGCACCTGCCCGGACATCATCCCGGGCGGCGAGTG 302 ************************************************************ consensus_4769#0 GACCAGCCGGATCATCCATCTGCTGAACGATCAGCATATGGGCGTGGTGACGGCGGCGAC 960 consensus_4769#1 GACCAGCCGGATCATCCATCTGCTGAACGATCAGCATATGGGCGTGGTGACGGCGGCGAC 362 ************************************************************ consensus_4769#0 CAGCCTGATCGATGCGCTGGTCAAGAAAAACCCGGAAGAGTACAAGGGCTGCGTCAGCTT 1020 consensus_4769#1 CAGCCTGATCGATGCGCTGGTCAAGAAAAACCCGGAAGAGTACAAGGGCTGCGTCAGCTT 422 ************************************************************ consensus_4769#0 GGCCGTGTCGCGCCTGTCCCGCATCGTGACCGCTTCGTACACGGATCTGCAGGACTACAC 1080 consensus_4769#1 GGCCGTGTCGCGCCTGTCCCGCATCGTGACCGCTTCGTACACGGATCTGCAGGACTACAC 482 ************************************************************ consensus_4769#0 GTACTACTTTGTGCCGGCGCCGTGGCTGTCGGTGAAGCTGCTGCGCCTGCTGCAGAACTA 1140 consensus_4769#1 GTACTACTTTGTGCCGGCGCCGTGGCTGTCGGTGAAGCTGCTGCGCCTGCTGCAGAACTA 542 ************************************************************ consensus_4769#0 CAACCCGCCGACGGAGGAT----------------------------------------- 1159 consensus_4769#1 CAACCCGCCGACGGAGGATCCGGGCGTGCGCGGTCGGCTGAACGAGTGTCTGGAGACGAT 602 ******************* consensus_4769#0 ----------- consensus_4769#1 ACTGAACAAGG 613 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||