These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4775#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 787 fasta sequence [CCGGACCATTTTAGGCGAGCGAAAAAATCGGCCTGCTGACGCTGCACTCGTGTCGCCGATAACAGTTTTCCTCCTCCGTAAGGTAATAGGTGTGTCCGTGAACAGTGGTGACCATTTTCGATTGCTGCGGATTTGTCCCACCCAGCTGCAATATGTCGCAGCCAACGGTCGCGTCCTACTTCAACACACGCAAACGCGCAGCGCACGATACGCTTGGGGCGGCGGGCCGAAATAAGGTACTGGTACTGGAAAACTCCCCCGTAGATACAGTTGGAAACTTGACGAACAGTTCACAGAACTCGGATCACGAGGAGCTACGCTTCGTGTTTGCTAACAATACCAACTTTACTTTGAAGAACCTTGAAGCCGCCGTCGGAAAAGATAATGGTGCCGTCAGCGATCCGGCGGAGCTGGGGCCGCCGTGTTACGCGAGCATCCCGGGCAATCAGACGCATCGGGGCCGGTCGATCTGGACGAGAAGACGAAGGCACTGCTGGCAGCAGCCCAGCCGAAGCTGGTGTCGTTCGTGAAGAAGGGCAATCTGTCACCACAGAAGCGCCCCCATACGGCCAGCCCGTCGAAGCGTCCCGCTGTGCCGGAAAAGAAGCTTGCTTCTCCGGTGAAGGTGGAACCCGTGGCAGCATCGGTTGTAGACTCCAAGCCGGTTGAGTTTTCGCCCCGCAACAACCTAAACAATGTGGCCAAGGCGCCGACGAAGGCTAGCGTTTTCGCGCACGCTCCAGCTGGGCAAGGACAAAGATGCCATGTCGCTGACGGACATACGCAA] [+] EMBL BM579935 [CCGGACCATTTTAGGCGAGCGAAAAAATCGGCCTGCTGACGCTGCACTCGTGTCGCCGATAACAGTTTTCCTCCTCCGTAAGGTAATAGGTGTGTCCGTGAACAGTGGTGACCATTTTCGATTGCTGCGGATTTGTCCCACCCAGCTGCAATATGTCGCAGCCAACGGTCGCGTCCTACTTCAACACACGCAAACGCGCAGCGCACGATACGCTTGGGGCGGCGGGCCGAAATAAGGTACTGGTACTGGAAAACTCCCCCGTAGATACAGTTGGAAACTTGACGAACAGTTCACAGAACTCGGATCACGAGGAGCTACGCTTCGTGTTTGCTAACAATACCAACTTTACTTTGAAGAACCTTGAAGCCGCCGTCGGAAAAGATAATGGTGCCGTCAGCGATCCGGCGGAGCTGGGGCCGCCGTGTTACGCGAGCATCCCGGGCAATCAGACGCATCGGGGCCGGTCGATCTGGACG ] [+] EMBL BM617807 [ ccgcccacGCGTCCGAAAAAATCGGCCTGCTGACGCTGCACTCGTGTCGCCGATAACAGTTTTCCTCCTCCGTAAGGTAATAGGTGTGTCCGTGAACAGTGGTGACCATTTTCGATTGCTGCGGATTTGTCCCACCCAGCTGCAATATGTCGCAGCCAACGGTCGCGTCCTACTTCAACACACGCAAACGCGCAGCGCACGATACGCTTGGGGCGGCGGGCCGAAATAAGGTACTGGTACTGGAAAACTCCCCCGTAGATACAGTTGGAAACTTGACGAACAGTTCACAGAACTCGGATCACGAGGAGCTACGCTTCGTGTTTGCTAACAATACCAACTTTACTTTGAAGAACCTTGAAGCCGCCGTCGGAAAAGATAATGGTGCCGTCAGCGATCCGGCGGAGCT GGGCCGCCGTGTTACGCGAGCATCCCGGGCAATCAGACGCATC GGGCCGGTCGATCTGGACGAGAAGACGAAGGCACTGCTGGCAGCAGCCCAGCCGAAGCTGGTGTCGTTCGTGAAGAAGGGCAATCTGTCACCACAGAAGCGCCCCCATACGGCCAGCCCGTCGAAGCGTCCCGCTGTGCCGGAAAAGAAGCTTGCTTCTCCGGTGAAGGTGGAACCCGTGGCAGCATCGGTTGTAGACTCCAAGCCGGTTGAGTTTTCGCCCCGCAACAACCTAAACAATGTGGCCAAGGCGCCGACGAAGGCTAGCGTTTTCGCGCACGCTCCAGCTGGGCAAGGACAAAGATGCCATGTCGCTGACGGACATACGCAA] consensusID : consensus_4775#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence [GTAGCAGATCGGCACGAGGCGGAATAGAAGCTTGCTTCTCCGGTGAAGGTGGAACCCGTGGCAGCATCGGTTGTATACTCCAAGCCNNGTTGAGTTTTCGCCCCGCAACAACCTAAACAATGTGGCCAAGGCGCCGACGAAGGCTAGCGTTTCGCGCAAGCTCCAGCTGGGCAAGGACAAAGATGCCATGTCGCTGACGGACATACGCAACAAGCTGCTGCAGCATCCCAGCCTGCCGGAGCTGAAAACGAAGCTGAACGCCATACAGAGCGGGCTCGATAAGATGGACCGTCTTCGCAGGGAGCGTCTCGAGGGAACGAAGCCTTCCGTCTCGCCGGCGGTGGCTGCTAAAAATCTCGAGAAATTTGCCACCCTGGACGTAGAGGTGATGGTAAGCCCAAAGAAAACGATCGCCAGTCCTTCGAAGCTGCTGCGCACACCGACGAAAGATGCGTCGAGCTCGCCGGCTAACAATGTAACGCCCAAGCGCNTNGTCGGCGCTGATGAGCCCGATCCAGGAGCCGACGGCCGGGACGCCCG] [+] EMBL BX619692 [GTAGCAGATCGGCACGAGGCGGAATAGAAGCTTGCTTCTCCGGTGAAGGTGGAACCCGTGGCAGCATCGGTTGTATACTCCAAGCCNNGTTGAGTTTTCGCCCCGCAACAACCTAAACAATGTGGCCAAGGCGCCGACGAAGGCTAGCGTTTCGCGCAAGCTCCAGCTGGGCAAGGACAAAGATGCCATGTCGCTGACGGACATACGCAACAAGCTGCTGCAGCATCCCAGCCTGCCGGAGCTGAAAACGAAGCTGAACGCCATACAGAGCGGGCTCGATAAGATGGACCGTCTTCGCAGGGAGCGTCTCGAGGGAACGAAGCCTTCCGTCTCGCCGGCGGTGGCTGCTAAAAATCTCGAGAAATTTGCCACCCTGGACGTAGAGGTGATGGTAAGCCCAAAGAAAACGATCGCCAGTCCTTCGAAGCTGCTGCGCACACCGACGAAAGATGCGTCGAGCTCGCCGGCTAACAATGTAACGCCCAAGCGCNTNGTCGGCGCTGATGAGCCCGATCCAGGAGCCGACGGCCGGGACGCCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4775#0 CCGGACCATTTTAGGCGAGCGAAAAAATCGGCCTGCTGACGCTGCACTCGTGTCGCCGAT 60 consensus_4775#1 ------------------------------------------------------------ consensus_4775#0 AACAGTTTTCCTCCTCCGTAAGGTAATAGGTGTGTCCGTGAACAGTGGTGACCATTTTCG 120 consensus_4775#1 ------------------------------------------------------------ consensus_4775#0 ATTGCTGCGGATTTGTCCCACCCAGCTGCAATATGTCGCAGCCAACGGTCGCGTCCTACT 180 consensus_4775#1 ------------------------------------------------------------ consensus_4775#0 TCAACACACGCAAACGCGCAGCGCACGATACGCTTGGGGCGGCGGGCCGAAATAAGGTAC 240 consensus_4775#1 --------------------------------------GTAGCAGATCGGCACGAGGC-- 20 * ** * ** * *** consensus_4775#0 TGGTACTGGAAAACTCCCCCGTAGATACAGTTGGAAACT-TGACGA-ACAGTTCACAGAA 298 consensus_4775#1 --GGAATAGAAGCTTGCTTCTCCGGTGAAGGTGGAACCCGTGGCAGCATCGGTTGTATAC 78 * * * *** * * * * * ** ***** * ** * * * * * * consensus_4775#0 CTCGGATCACGAGGAGCTACGCTTCGTGTTTGCTAACAATACCAACTTTACTTTGAAGAA 358 consensus_4775#1 TCCAAGCCNNGTTGAGTT----TTCGC-CCCGC-AACAACCTAAACAATGT-------GG 125 * * * *** * **** ** ***** *** * consensus_4775#0 CCTTGAAGCCGCCGTCGGAAAAGATAATGGTGCCGTCAGCGATCCGGCGGAGCTGGGGCC 418 consensus_4775#1 CCAAGGCGCCGACGAAGGCTAGCGTT-TCGCGCAAGCTCCAGCTGGGCAAGGACAAAGAT 184 ** * **** ** ** * * * * ** * * *** * * consensus_4775#0 GCCGTGTTAC--GCGAGCATCCCGGGCAATCAGACGCA---TCGGGGCCGGTCG-ATCTG 472 consensus_4775#1 GCCATGTCGCTGACGGACATACGCAACAAGCTGCTGCAGCATCCCAGCCTGCCGGAGCTG 244 *** *** * ** *** * *** * * *** ** *** * ** * *** consensus_4775#0 GACGAGAAGACGAAGGCACTGCTGGCAGCAGCCCAGCCGAAGCTGGTGTCGTTCGTGAAG 532 consensus_4775#1 AAAACGAAGCTGAACGCCATACAG--AGCGGGCTCGATAAGATGGACCGTCTTCGCAGGG 302 * **** *** ** * * * *** * * * * * **** * consensus_4775#0 AAGGGCAATCTGTCACCACAGAAGCGCCCCCATACGGCCAGCCCGTCGAAGCGTCCCGCT 592 consensus_4775#1 AGCGTC---------TCGAGGGAACGAAGCCTTCCGTCTCGCCGGCGGTGGCTGCTAAAA 353 * * * * * * ** ** * ** * *** * * ** * consensus_4775#0 GTGCCGGAAAAGAAGCTTGCTTCTCCGGTGAAGGTGGAACCCGTGGCAGCATCGGTTGTA 652 consensus_4775#1 ATCTCG----AGAAATTTGCCACCCTGG---ACGTAGAGGTGATGGTAAGCCCAAAGAAA 406 * ** **** **** * * ** * ** ** *** * * * consensus_4775#0 --GACTCCAAGCCGGTTGAGTTTTCGCCCCGCAACAACCTAAACAATGTGGCCAAGGCGC 710 consensus_4775#1 ACGATCGCCAGTCCTTCGAAGCTGCTGCGCACACCGAC--GAAAGATGCGTCGAGCTCGC 464 ** * ** * * ** * * * * ** * ** ** *** * * * *** consensus_4775#0 CGACGAAGGCTAGCGTTTTCGCGCACGCTCCAGCTGGGCAAGGACAAAGATGCCATGTCG 770 consensus_4775#1 CGGCTAACAATGTAACGCCCAAGCGCNTNGTCGGCGCTGATGAGCCCGATCCAGGAGCCG 524 ** * ** * * ** * * * * * * * ** consensus_4775#0 CTGACGGACATACGCAA 787 consensus_4775#1 ACGGCCGGGACGCCCG- 540 * * * * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||