These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4786#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 984 fasta sequence [TAACACAACTAGATAGCATAACTAACCAACTAATACGTCTCATATTTGGCAACCAAATTTGCAATGAGCCCCGAACGAGAGGCCACAAGCACCTAGACTCTTCGTGTTAGACGTTTTAAGTGTTTCCCTTTCGACTCCTTACTGCACAGTTTTTACTTTGTCTCATTTCGTCTGCATGTTTCCTCCGAAAAACTTGCAGCAAATAAAACACTTCTCGTGCAAGGTTTTCATTGTGGTCCCTGTGTTTTACCCCCTTTCCTTTGCAGACTTTGACGAGATGCACATGACAACGCATGAGTGGAGCGAAAAGGATAATACTCAATGGCAGGAACAGTTTGCTGCCTGGAGCCTTAACTCGCAAAACCAATGAACGGCGAACGGACCGTGCAATGCAAGCAGTAAATGAAGGGCGTTACAAGCAATCGTTGGAGGGCGATCAAACGATCGCACGGCGCCTAACGCGCGAGCGGAAGTTAATTTTTAGTGTATCACTAAGGATAAAACACAATTTCAGACAGCTCTATTACCTTATCGCATTGCAACACACATTGTCATTAGCGTTACACATTAGCGCGTACGGATACTTAAGGCTTTGTTTTTGTTGTTTGTATTTTACATGTATTGTACCTATTTTTTAACGTGTTTCCCTTCACAAACGGGGTGGTTTTACAGAAGCGTATAAGAACAAACAAGAAGCGAATACTGATCTGTTTGAAGCAATAATGCAAAAGCGCAACACATGCATTCCAGGCATAAGATAAGATCATGCAAATGGAAAGGAACACATTTTTAGTGATACAAGACGAACAGGTCTTGTTAGGGTTAGCATTGTTACGAAAGCGTTTTATGGACTTGAAGCAAGCTCTAGATGCAGCCACAGCCTCTTGCCAGAACTAAGAAACATCTTTGATTTCAATCACTCTATTCAACGGTACCCAGTTAGCGGTAGGTTTAAAAATGGTAATTTATCTGCTTTACCTCAAT] [+] EMBL BX609076 [TAACACAACTAGATAGCATAACTAACCAACTAATACGTCTCATATTTGGCAACCAAATTTGCAATGAGCCCCGAACGAGAGGCCACAAGCACCTAGACTCTTCGTGTTAGACGTTTTAAGTGTTTCCCTTTCGACTCCTTACTGCACAGTTTTTACTTTGTCTCATTTCGTCTGCATGTTTCCTCCGAAAAACTTGCAGCAAATAAAACACTTCTCGTGCAAGGTTTTCATTGTGGTCCCTGTGTTTTACCCCCTTTCCTTTGCAGACTTTGACGAGATGCACATGACAACGCATGAGTGGAGCGAAAAGGATAATACTCAATGGCAGGAACAGTTTGCTGCCTGGAGCCTTAACTCGCAAAACCAATGAACGGCGAACGGACCGTGCAATGCAAGCAGTAAATGAAGGGCGTTACAAGCAATCGTTGGAGGGCGATCAAACGATCGCACGGCGCCTAACGCGCGAGCGGAAGTTAATTTTTAGTGTATCACTAAGGATAAAACACAATTTCAGACAGCTCTATTACCTTATCGCATTGCAACACACATTGTCATTAGCGTTACACATTAGCGCG ] [+] EMBL BX617147 [ CAATGAACGGCGAACGGACCGTGCAATGCAAGCAGTAAATGAAGGGCGTTACAAGCAATCGTTGGAGGGCGATCAAACGATCGCACGGCGCCTAACGCGCGAGCGGAAGTTAATTTTTAGTGTATCACTAAGGATAAAACACAATTTCAGACAGCTCTATTACCTTATCGCATTGCAACACACATTGTCATTAGCGTTACACATTAGCGCGTACGGATACTTAAGGCTTTGTTTTTGTTGTTTGTATTTTACATGTATTGTACCTATTTTTTAACGTGTTTCCCTTCACAAACGGGGTGGTTTTACAGAAGCGTATAAGAACAAACAAGAAGCGAATACTGATCTGTTTGAAGCAATAATGCAAAAGCGCAACACATGCATTCCAGGCATAAGATAAGATCATGCAAATGGAAAGGAACACATTTTTAGTGATACAAGACGAACAGGTCTTGTTAGGGTTAGCATTGTTACGAAAGCGTTTTATGGACTTGAAGCAAGCTCTAGATGCAGCCACAGCCTCTTGCCAGAACTAAGAAACATCTTTGATTTCAATCACTCTATTCAACGGTACCCAGTTAGCGGTAGGTTTAAAAATGGTAATTTATCTGCTTTACCTCAAT] consensusID : consensus_4786#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 512 fasta sequence [TGCGCACTACGAAGGACATCTTCCGCCCGGCGTCGTACATAAGCCGCCGATGCGCTACTTTTCAGAGGGATCCGACGATGACAGTATCGCCTCGTCGCAGCACACTATGCGCCATTCGCTAGACTTTGACGAGATGCACATGACAACGCATGAGTGGAGCGAAAAGGATAATACTCAATGGCAGGAACAGTTTGCTGCCTGGAGCCTTAACTCGCAAAACCAATGAGCGGCCAATGGACCGTGCAATACAAGCAGCAAATGAAGGGCGCTACAAGCAATCGTTGGAGGACGATCAAACGATCGCACGGCACGCCTAACGTGCGAGCGGAAGTTAATTTTTAGTGTATCACTAAGGATAAAACACAATTTCAGACAGCTCTATTACCTTATCGCATTGCAACACACATTGTCATTAGCGTTACACATTAGCGCGTACGGATACTTAAGGCTTTGTTTTTGTTGTTTGTATTTTACATGTATTGTACCTATTTTTTAACGTGTTTCCCTTCACA] [+] EMBL BX603435 [TGCGCACTACGAAGGACATCTTCCGCCCGGCGTCGTACATAAGCCGCCGATGCGCTACTTTTCAGAGGGATCCGACGATGACAGTATCGCCTCGTCGCAGCACACTATGCGCCATTCGCTAGACTTTGACGAGATGCACATGACAACGCATGAGTGGAGCGAAAAGGATAATACTCAATGGCAGGAACAGTTTGCTGCCTGGAGCCTTAACTCGCAAAACCAATGAGCGGCCAATGGACCGTGCAATACAAGCAGCAAATGAAGGGCGCTACAAGCAATCGTTGGAGGACGATCAAACGATCGCACGGCACGCCTAACGTGCGAGCGGAAGTTAATTTTTAGTGTATCACTAAGGATAAAACACAATTTCAGACAGCTCTATTACCTTATCGCATTGCAACACACATTGTCATTAGCGTTACACATTAGCGCGTACGGATACTTAAGGCTTTGTTTTTGTTGTTTGTATTTTACATGTATTGTACCTATTTTTTAACGTGTTTCCCTTCACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4786#0 TAACACAACTAGATAGCATAACTAACCAACTAATACGTCTCATATTTGGCAACCAAATTT 60 consensus_4786#1 ------------------------------------------------------------ consensus_4786#0 GCAATGAGCCCCGAACGAGAGGCCACAAGCACCTAGACTCTTCGTGTTAGACGTTTTAAG 120 consensus_4786#1 ------------------------------------------------------------ consensus_4786#0 TGTTTCCCTTTCGACTCCTTACTGCACAGTTTTTACTTTGTCTCATTTCGTCTGCATGTT 180 consensus_4786#1 ---------------TGCGCACTACGAAGGACATCTTCCGCCCGGCGTCGTACATAAGCC 45 * * *** * ** * * * * **** * * consensus_4786#0 TCCTCCGAAAAACTTGCAGCAAATAAAACACTTCTCGTGCAAGGTTTTCATTGTGGTCCC 240 consensus_4786#1 GCCGATGCGCTACTTTT------CAGAGGGATCCGACGATGACAGTATCGCC-TCGTCGC 98 ** * **** * * * * * * ** * *** * consensus_4786#0 TGTGTTTTACCCCCTTTCCTTTGCAGACTTTGACGAGATGCACATGACAACGCATGAGTG 300 consensus_4786#1 AGCACACTATGCGCCATTCGCT--AGACTTTGACGAGATGCACATGACAACGCATGAGTG 156 * ** * * * * * ************************************ consensus_4786#0 GAGCGAAAAGGATAATACTCAATGGCAGGAACAGTTTGCTGCCTGGAGCCTTAACTCGCA 360 consensus_4786#1 GAGCGAAAAGGATAATACTCAATGGCAGGAACAGTTTGCTGCCTGGAGCCTTAACTCGCA 216 ************************************************************ consensus_4786#0 AAACCAATGAACGGCGAACGGACCGTGCAATGCAAGCAGTAAATGAAGGGCGTTACAAGC 420 consensus_4786#1 AAACCAATGAGCGGCCAATGGACCGTGCAATACAAGCAGCAAATGAAGGGCGCTACAAGC 276 ********** **** ** ************ ******* ************ ******* consensus_4786#0 AATCGTTGGAGGGCGATCAAACGATCGCACGGC--GCCTAACGCGCGAGCGGAAGTTAAT 478 consensus_4786#1 AATCGTTGGAGGACGATCAAACGATCGCACGGCACGCCTAACGTGCGAGCGGAAGTTAAT 336 ************ ******************** ******** **************** consensus_4786#0 TTTTAGTGTATCACTAAGGATAAAACACAATTTCAGACAGCTCTATTACCTTATCGCATT 538 consensus_4786#1 TTTTAGTGTATCACTAAGGATAAAACACAATTTCAGACAGCTCTATTACCTTATCGCATT 396 ************************************************************ consensus_4786#0 GCAACACACATTGTCATTAGCGTTACACATTAGCGCGTACGGATACTTAAGGCTTTGTTT 598 consensus_4786#1 GCAACACACATTGTCATTAGCGTTACACATTAGCGCGTACGGATACTTAAGGCTTTGTTT 456 ************************************************************ consensus_4786#0 TTGTTGTTTGTATTTTACATGTATTGTACCTATTTTTTAACGTGTTTCCCTTCACAAACG 658 consensus_4786#1 TTGTTGTTTGTATTTTACATGTATTGTACCTATTTTTTAACGTGTTTCCCTTCACA---- 512 ******************************************************** consensus_4786#0 GGGTGGTTTTACAGAAGCGTATAAGAACAAACAAGAAGCGAATACTGATCTGTTTGAAGC 718 consensus_4786#1 ------------------------------------------------------------ consensus_4786#0 AATAATGCAAAAGCGCAACACATGCATTCCAGGCATAAGATAAGATCATGCAAATGGAAA 778 consensus_4786#1 ------------------------------------------------------------ consensus_4786#0 GGAACACATTTTTAGTGATACAAGACGAACAGGTCTTGTTAGGGTTAGCATTGTTACGAA 838 consensus_4786#1 ------------------------------------------------------------ consensus_4786#0 AGCGTTTTATGGACTTGAAGCAAGCTCTAGATGCAGCCACAGCCTCTTGCCAGAACTAAG 898 consensus_4786#1 ------------------------------------------------------------ consensus_4786#0 AAACATCTTTGATTTCAATCACTCTATTCAACGGTACCCAGTTAGCGGTAGGTTTAAAAA 958 consensus_4786#1 ------------------------------------------------------------ consensus_4786#0 TGGTAATTTATCTGCTTTACCTCAAT 984 consensus_4786#1 -------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||